Qiong
Zhang
*a,
Joseph T.
Snow
a,
Phil
Holdship
a,
David
Price
b,
Paul
Watson
c and
Rosalind E. M.
Rickaby
a
aDepartment of Earth Sciences, University of Oxford, OX1 3AN, UK. E-mail: Joan.zhang@earth.ox.ac.uk
bPerkinElmer, Inc., Seer Green, Buckinghamshire, HP9 2FX, UK
cElemental Scientific Instruments Ltd., 73 Manchester Road, Warrington, WA1 4AE, UK
First published on 29th May 2018
The quotas of a limited number of trace elements in the extended Redfield ratios have been determined before and thought to reflect the requirements of phytoplankton. However, these quotas are found to be quite variable under different environmental conditions, suggesting that the cellular trace metal quota is not an accurate measure of cellular trace metal requirement. Here we present a method that has been developed and optimised for direct analysis of 32 elements simultaneously in small volume of cell lysate in buffers with a high salt matrix (800 μL, up to 30% TDS). We then demonstrate the application of the method to resolve the extended Redfield ratio of cell requirement by measuring the intracellular trace element composition of six Emiliania huxleyi strains isolated from different locations. The method uses a quadrupole-ICP-MS with a collision/reaction cell to resolve polyatomic interferences. The ICP-MS is interfaced with an Elemental Scientific Flow Injection Automation System (FIAS). The accuracy of the analysis according to this new method is verified by measuring 2 certified reference materials, BCR 273 and BCR 414. This work presents a number of running parameters, optimised for multi-element analysis of samples with a high TDS sample matrix. This method allows direct measurement of protein samples in their native state: no alteration or digestion is needed, which simplifies the steps for sample preparation. In this study with 6 E. huxleyi strains isolated from the environment, our method reveals significant differences between whole cell and intracellular metal quotas for all strains. The intracellular metal composition, interpreted as a truer representation of organisms' metal requirements, shows an environmentally dependent signal. This suggests that, compared with whole cell metal quotas, the metalloproteins are a better indicator of metal requirements of phytoplankton under various environmental conditions.
Micronutrient trace metals however account for a far smaller proportion of phytoplankton biomass8–10 and play a more transient but equally important role in biology as catalytic centres of metalloproteins.11 The flexible and substitutable nature of micronutrient trace-metals12,13 contrasts the relative inflexibility of macronutrient pools that acts to maintain the observed constant ratio.4,7 Correspondingly, observations of phytoplankton trace-metal quotas have revealed substantially higher variability in their stoichiometry than that of the macronutrients.8–10,14 Alongside high stoichiometric variability, a disconnect between intracellular trace-metal content and interpretable biological requirement has been observed on many occasions8,15 suggesting an incomplete understanding of the role intracellular metal quotas play in phytoplankton cells. It is well established that whole cell quota does not necessarily represent biological use when it comes to trace-metals, iron storage in ferritin complexes is widespread amongst marine bacteria16,17 and some eukaryotes,18–20 increasing evidence of copper storage strategies is emerging in soil bacteria21 and many phytoplankton store excess metals in the so called ‘metal-rich granules’ in the cell wall.22–24 Furthermore, although the expanding numbers and roles of metallic elements implicated in biological functions are striking,25 the diversity of biologically functional metal ions is far from well characterised: across the periodic table, only 25 of the 117 elements are known to be essential to all life, with another 7 having possible biological roles for some species.26 Therefore, in order to expand our knowledge on the requirements of trace elements by phytoplankton, a method is required to efficiently and accurately quantify the cellular usage of a wide range of elements simultaneously in biological samples.
Here we present a novel method for quantifying the abundance of 32 trace metals simultaneously in both the whole cell digest alongside an operationally defined intracellular fraction. Separation of the intracellular cytosolic fraction from the membrane rich, cell debris fraction provides the foundation towards being able to disentangle intracellular metal presence and biological metal use and allows us to present an extended Redfield ratio for trace metal use.
The method uses inductively coupled plasma-mass spectrometry (ICP-MS), which is highly sensitive for measuring trace elements in a wide variety of sample types and has been employed to analyse the metal compositions of separated proteins.27 However, the conventional sample introduction system with ICP-MS requires the total concentration of dissolved solids in samples to be less than 0.2%,28 otherwise materials may deposit within the instrument, causing instrument drift and signal suppression.29 In order to measure biological samples such as cell lysate or purified proteins, a time-consuming pre-treatment is always needed, which involves pre-concentration, acid or microwave digestion, and dilution with the desired media (e.g. 2% HNO3). All these steps may introduce unnecessary contamination and uncertainty to the measurement, which will affect the precision of the analysis. Another major drawback of determination by ICP-MS has been polyatomic interferences.30 To reduce the impact of polyatomic interferences, modern day quadrupole ICP-MS systems are often equipped with collision/reaction cell technologies. However, the effectiveness of these devices remains a contentious issue, especially when dealing with a complex sample matrix, such as is found in biological materials. These interferences may affect the accuracy of the measurement. Therefore, a robust method to deal with these two major drawbacks is required in order for an accurate determination of metal contents in native proteins.
Some recent studies reported using an aerosol dilution technique as a simple strategy for the analysis of high matrix samples;31,32 however, they can only measure samples with quite low TDS (less than 3%) and with a relatively large volume (>5 mL sample). For high TDS samples,33 developed a method using ICP-MS coupled with an ultra-high matrix introduction system (UHMI) to measure Eu and U in highly saline samples (up to 5 mol L−1 NaCl), but such a method requires 100 times on-line dilution for the samples, and therefore is not suitable for analysing elements with low initial concentrations. To date, no systematic strategy for the simultaneous determination of multiple elements in small volume samples with a high TDS matrix by ICP-MS has been reported so far. Therefore, in the present study, we developed and optimised a novel method to satisfy two of our requirements: (i) the capability to measure intracellular elements composition with proteins in their native state (normally containing high TDS to maintain protein conformation), and (ii) the capability to determine a wide range of different elements in small volume cytosol fractions (<1 mL), so that our knowledge of the protein-metal-centres can be expanded. It allows direct analysis of 32 elements simultaneously in samples with a high TDS matrix (up to 30%). The method uses a quadrupole-ICP-MS with a collision/reaction cell to resolve polyatomic interferences.30,34,35 Collision cell technology is operated using kinetic energy discrimination (KED) mode. In this mode, a potential barrier is set between the cell and the quadrupole mass filter. When polyatomic ions pass through a cell pressurized with helium gas, their potential energy is decreased below the KED bias voltage required to enter the quadrupole mass filter, due to the collisions with the inert gas.36 The dynamic reaction cell (DRC) approach, removes the interferences through two mechanisms: chemical reactions between the interfering ions and the ammonia gas, and dynamic bandpass tuning (DBT), which precisely controls the bandpass mass filter inside the dynamic reaction cell to exclude the undesired species. The ICP-MS is also interfaced with an Elemental Scientific Flow Injection Automation System (FIAS), which allows direct injection of a micro-volume of sample without the need for offline dilution. The accuracy of the analysis is verified by measuring 2 certified reference materials, BCR 273 (single cell protein) and BCR 414 (plankton).
This work provides valuable parameters that have been optimised for multi-element analysis in a low volume but high TDS sample matrix, and the method allows direct measurement of protein samples in their native state; no alteration is needed, which is time efficient for sample preparation. Such samples can be whole cell lysate or fractions from HPLC separation which contain high percentage concentrations of NaCl, or other high TDS samples such as seawater. We demonstrate an application of the method to determination of an extended Redfield ratio of metal requirements in E. huxleyi and determine the difference of this ratio to the extended Redfield ratio of cell quotas developed previously based on whole cell analysis.9
The NexION 350D has a collision/reaction cell to improve signal to background measurements for many elements that suffer from spectral interference. For this study CP grade helium gas (>99.999% purity) was used as a collision cell gas for KED mode (Kinetic Energy Discrimination) and electronic grade ammonia gas (>99.9995% purity) was used as a reactive cell gas, for charge transfer and atom transfer reaction dynamics in DRC mode (Dynamic Reaction Cell). Both cell gas modes are able to be programmed to switch, then stabilise and measure with the ESI FAST FIAS flow injection system.
The ICP-MS was optimised before measurements were made (in standard mode, KED mode, and DRC mode) to maximise sensitivity across the mass range. The sensitivities for Li, Mg, In, Ce, Pb, and U were monitored while ensuring that the CeO+/Ce+ ratio was maintained at less than 2.5%.
The detailed instrumental settings are listed in Table 1, and parameters used for each analyte are summarised in Table 2. An ESI Pergo Argon Nebulizer Gas Humidifier is also used in this study to reduce salting of the nebuliser.
ICP-MS instrument | NexION 350D |
---|---|
Plasma condition | |
RF power | 1600 W |
Plasma gas flow | 18 mL min−1 |
Auxiliary gas flow | 1.2 mL min−1 |
Nebulizer gas flow | 0.8–1.0 mL min−1 |
Mass spectrometer setting | |
Scanning mode | Peak hopping |
Dwell time | Variable, dependent upon FIAS method |
Sweeps | 1 |
Readings | 50 |
Replicates | 3 |
Non-DRC setting | |
RPq | 0.25 |
RPa | 0 |
Other | |
Loop size | 500 μL |
Element | Potential interferences56 | Mode | Cell gas flow | RPq | Detection limit (ng mL−1) |
---|---|---|---|---|---|
31P | 14N16O1H, 15N15N1H, 15N16O, 14N17O, 13C18O, 12C18O1H | KED | 0.5 | 0.25 | 8.67 |
77Se | 40Ar37Cl, 40Ca37Cl, 36Ar40Ar1H | KED | 0.5 | 0.25 | 2.6 |
7Li | KED | 4.2 | 0.25 | 0.42 | |
24Mg | 12C2 | KED | 4.2 | 0.25 | 0.92 |
27Al | 12C15N, 13C14N, 1H12C14N | KED | 4.2 | 0.25 | 4.09 |
47Ti | 32S14N1H, 30Si16O1H, 32S15N, 33N14N, 33S14N, 15N16O2, 14N16O21H, 12C35Cl, 31P16O | KED | 4.2 | 0.25 | 5.46 |
55Mn | 40Ar14N1H, 39K16O, 37Cl18O, 40Ar15N, 38Ar17O, 36Ar18O1H, 38Ar16O1H, 37Cl17O1H, 23Na32S, 36Ar19F | KED | 4.2 | 0.25 | 0.23 |
56Fe | 40Ar16O, 40Ca16O, 40Ar15N1H, 38Ar18O, 38Ar17O1H, 37Cl18O1H | KED | 4.2 | 0.25 | 12.42 |
59Co | 43Ca16O, 42Ca16O1H, 24Mg35Cl, 36Ar23Na, 40Ar18O1H, 40Ar19F | KED | 4.2 | 0.25 | 0.02 |
60Ni | 44Ca16O, 23Na37Cl, 43Ca16O1H | KED | 4.2 | 0.25 | 0.11 |
63Cu | 40Ar23Na | KED | 4.2 | 0.25 | 0.12 |
66Zn | 50Ti16O, 34S16O2, 33S16O21H, 32S16O18O, 32S17O2, 33S16O17O, 32S34S, 33S2 | KED | 4.2 | 0.25 | 2.07 |
69Ga | 35Cl16O18O, 35Cl17O2, 37Cl16O2, 36Ar33S, 33S18O2, 34S17O18O, 36S16O17O, 33S36S | KED | 4.2 | 0.25 | 0.001 |
74Ge | 40Ar34S, 36Ar38Ar, 37Cl37Cl, 38Ar36S | KED | 4.2 | 0.25 | 0.62 |
75As | 40Ar35Cl, 40Ca35Cl | KED | 4.2 | 0.25 | 0.04 |
88Sr | 44Ca2 | KED | 4.2 | 0.25 | 0.32 |
89Y | KED | 4.2 | 0.25 | 0.14 | |
90Zr | KED | 4.2 | 0.25 | 0.05 | |
98Mo | 81Br17O, 41K2O | KED | 4.2 | 0.25 | 0.09 |
107Ag | 91Zr16O | KED | 4.2 | 0.25 | 0.06 |
111Cd | 95Mo16O, 94Zr16O1H, 39K216O21H | KED | 4.2 | 0.25 | 0.66 |
118Sn | 102Ru16O, 102Pd16O | KED | 4.2 | 0.25 | 0.58 |
121Sb | 105Pb16O | KED | 4.2 | 0.25 | 0.21 |
138Ba | KED | 4.2 | 0.25 | 0.11 | |
184W | KED | 4.2 | 0.25 | 0.04 | |
205Tl | KED | 4.2 | 0.25 | 0.01 | |
208Pb | 192Pt16O | KED | 4.2 | 0.25 | 0.001 |
39K | 38Ar1H | DRC | 0.8 | 0.8 | 3.34 |
44Ca | 12C16O2, 14N216O, 28Si16O | DRC | 0.8 | 0.5 | 45.04 |
51V | 35Cl16O | DRC | 0.8 | 0.8 | 0.002 |
56Fe | 40Ar16O, 40Ca16O, 40Ar15N1H, 38Ar18O, 38Ar17O1H, 37Cl18O1H | DRC | 0.8 | 0.8 | 0.11 |
52Cr | 40Ar12C, 35Cl16O1H, 36Ar16O, 37Cl15N, 34S18O, 36S16O, 38Ar14N, 36Ar15N1H, 35Cl17O | DRC | 0.6 | 0.8 | 0.06 |
79Br | 40Ar39K, 31P16O3, 38Ar40Ar1H | DRC | 0.6 | 0.45 | 0.67 |
The certified materials were weighed carefully with an analytical balance and then completely digested with QD 16 M HNO3 + 30% H2O2 (v/v). The digests were then dried on a hotplate and brought back to the desired volume with 2% HNO3.
Intracellular fractions were extracted from six Emiliania huxleyi strains isolated from different locations during three research cruises in 2011.38 The strains were cultured in Aquil* medium (NCMA) modified from ref. 39 and were kept at 20 °C at 150 μmol photons m−2 s−1 PAR (photosynthetically active radiation) with a day:night photo-period of 12:12 hours. The cells were harvested at the late exponential stage, by centrifugation (4100 rpm for 20 min) and rinsed 3 times with chelex-cleaned synthetic ocean water40 to remove the weakly bound surface metals. The cell pellets were then resuspended in an extraction buffer (20 mM Tris-Cl, pH 8.0)41 and sonicated 6 times for 30 s bursts (on ice) with 1 min interval between sonication (Hielscher UP200S ultrasonic processor, 70% amplitude).42 The cell lysate was centrifuged at 1500g at 4 °C for 30 min, and the supernatant containing soluble content of the cytoplasm (S1) was passed through a pre-cleaned 0.22 μm PTFE membrane before being subjected to trace element analysis by ICP-MS. Protein concentrations in S1 were determined via Bradford assay.43,44 Two aliquots of S1 fraction were taken from each sample: one for direct element analysis, and the other was digested using the same method for digesting the certified materials. The pellet (P1), containing most insoluble membrane fractions, was kept in a 100 °C water bath for 2 minutes and then digested with 0.5 mol L−1 NaOH at 70 °C for 60 minutes. We then centrifuged the digest at 10000g for 10 minutes to get the supernatant (S2) containing the cellular debris and the pellet (P2) containing the metal-rich granules (MRG)24 and the coccoliths. These two subcellular fractions were then acid digested as previously described and the metal compositions were also determined by the ICP-MS.
The elements that benefit from being analysed using KED mode are listed in Table 2. The cell gas flow in the KED mode was 4.2 mL min−1 for most of the elements (Table 2). However, due to the low ionisation efficiency and the loss of energy from collision with helium gas, the signals for P and Se are very low with such a high cell gas flow. Therefore, a cell gas flow rate of 0.5 mL min−1 was employed to measure these elements (Table 2).
We note that KED mode was not ideal for every element; collision with helium gas not only suppresses signals of polyatomic interferences, but also significantly suppresses the analyte signal. This could lead to a low signal/noise ratio, which affects the accuracy of the measurement. Therefore, for elements such as K and Br, DRC mode was selected as a better option.
Here, we assess and optimise the gas flow rate and the bandpass tuning parameter (RPq) for different elements by measuring a 10 ng mL−1 standard solution and comparing the signals with those from a blank measurement of 2% HNO3 (Fig. 1). The optimal cell gas flow and RPq values varied for different elements (Table 3). With a certain RPq value, higher ammonia gas flow rates resulted in lower signals for the elements, but not necessarily a lower signal to noise ratio (S/N). Similarly, with a certain gas flow rate, a higher RPq value also resulted in lower signals for the measurement, but a higher signal to noise ratio for many elements, such as Cr and Fe. It has to be noted that, the optimum RPq values and cell gas flow rates were not purely dependent on the signal to noise ratio. The raw signals for the elements are also important. If the raw signals were too low, such as when the RPq value was set to 0.9, the precision of the measurements would be significantly affected. Therefore, the raw counts also need to be considered when optimising the method. With the instrument in this study, we allowed a period of 30 seconds to change between different cell modes. Therefore, considering the efficiency of the measurement for each sample, two cell gas flows were chosen (0.6 mL min−1 and 0.8 mL min−1) to achieve a relative high S/N for all elements, and the RPq values employed are listed in Table 2.
Fig. 1 Effect of the ammonia reaction gas flow rate and RPq on the signal/noise of 51V, 52Cr, 56Fe, 57Fe, and 79Br. The concentration of the standards was 10 ng mL−1 and the blank was 2% HNO3. |
56Fe (KED) | BEC (ng mL−1) | 57Fe (KED) | BEC (ng mL−1) | 56Fe (DRC) | BEC (ng mL−1) | 57Fe (DRC) | BEC (ng mL−1) | 88Sr (KED) | BEC (ng mL−1) | |
---|---|---|---|---|---|---|---|---|---|---|
Blank | 0.248 | — | 9.98 × 10−4 | — | 0.061 | — | 0.003 | — | 6.32 × 10−4 | — |
100 ng mL−1 Ca | 0.270 | — | 1.16 × 10−3 | — | 0.062 | — | 0.004 | — | 4.52 × 10−4 | — |
200 ng mL−1 Ca | 0.269 | — | 1.04 × 10−3 | — | 0.064 | — | 0.006 | 0.467 | 9.83 × 10−4 | — |
500 ng mL−1 Ca | 0.270 | — | 8.48 × 10−4 | — | 0.064 | — | 0.007 | 0.876 | 6.74 × 10−4 | — |
1 μg mL−1 Ca | 0.250 | — | 8.32 × 10−4 | — | 0.065 | — | 0.022 | 6.295 | 1.33 × 10−3 | 0.172 |
2 μg mL−1 Ca | 0.251 | — | 9.44 × 10−4 | — | 0.077 | 0.095 | 0.039 | 12.744 | 1.58 × 10−3 | 0.233 |
5 μg mL−1 Ca | 0.253 | — | 8.46 × 10−4 | — | 0.100 | 0.33 | 0.092 | 32.687 | 3.94 × 10−3 | 0.813 |
10 μg mL−1 Ca | 0.238 | — | 9.78 × 10−4 | — | 0.136 | 0.69 | 0.163 | 59.146 | 8.26 × 10−3 | 1.87 |
Two iron isotopes, 56Fe and 57Fe, were monitored simultaneously in both KED and DRC mode. 56Fe is the most abundant Fe isotope (91.7%), but it has interferences from the most abundant argon oxide, 40Ar16O+. To avoid this interference, 57Fe may be measured instead. However, the isotopic abundance of naturally occurring 57Fe is only 2.2%, and it also has interferences originating from 40Ar17O and 40Ar16O1H, which may be too high to neglect. Under most conditions, it is better to eliminate these interferences in DRC mode, because the intensity of Fe would not be suppressed as much as in KED mode. Further the noise from the interferences was much lower, which means a much higher signal to noise ratio in the DRC mode. However, with Ca-rich samples, measurements in the DRC mode may still be problematic. As shown in Table 2, in the DRC mode, although low Ca concentration (less than 1 μg mL−1) did not have a significant impact on the signal for 56Fe, higher Ca concentration may significantly increase the background equivalent concentration of 56Fe. For 57Fe in the DRC mode, Ca has an even greater impact, which may be due to the formation of 40Ca14N1H3 from the reaction between Ca and the ammonia gas. Therefore, we conducted a further optimisation with the DRC method for 56Fe. A 10 μg mL−1 Ca standard was measured as 56Fe at the optimised cell gas flow rate (0.8 mL min−1) with various RPq values. A 10 ng mL−1 Fe standard and a blank solution (2% HNO3) were also measured under the same condition. The data was plotted and compared in Fig. 2. With the same cell gas flow rate, the intensity from the Ca interference was the highest when the RPq value was set to 0.6, and the equivalent intensity decreased with higher RPq values. However, the background equivalent intensity from Ca interference cannot be fully eliminated even with the highest RPq value (RPq = 0.9, Fig. 2). The signals from the Fe standard stayed constant between an RPq value of 0.45 to 0.8, and the intensity decreased significantly when the RPq value was 0.9. The difference between Fe signals and the Ca interference was largest when the RPq was 0.8. The potential interference of 39K14N1H3+ was also investigated by introducing a 10 μg mL−1 K standard solution and measured with various RPq values. It is obvious that the signals from a K interference were suppressed to blank level when the RPq value was higher than 0.6. Therefore, 0.8 is the optimised RPq value for measuring 56Fe in the DRC mode, and the background equivalent concentration from 10 μg mL−1 Ca was less than 1 ng mL−1 (Fig. 3 and Table 3). This is acceptable when the Fe concentration in samples is higher than 5 ng mL−1, and Ca concentration is less than 10 μg mL−1. When Ca concentration is higher than 10 μg mL−1, a separate calibration with Ca standards can be performed to take the interference into account with the Fe measurement. However, if the Ca concentration is too high, such as 400 μg mL−1 in seawater, the interference may be too large to allow a precise measurement of Fe in DRC mode.
Fig. 2 Signal counts of 56Fe and potential spectral overlap cluster ions at 56 as a function of RPq. The ammonia gas flow rate was 0.8 mL min−1. |
Fig. 3 Ca standard curves for correcting background equivalent concentrations for 88Sr (KED mode), 56Fe (DRC mode), and 57Fe (DRC mode). |
In KED mode, the introduction of a Ca solution did not affect the signals for either 56Fe or 57Fe. From 100 ng mL−1 to 10 μg mL−1, the signals from Ca standards stayed constant at the background level. However, as mentioned before, there was interference from argon oxides for both 56Fe and 57Fe, and the signal to noise ratio for Fe measurement was not high. If the iron concentration in samples is too low (less than 5 ng mL−1), it is challenging to get an accurate measurement in this mode.
Other than iron, calcium can also interfere with the measurement of 88Sr in KED mode. As shown in Table 3, when Ca concentration was larger than 1 μg mL−1, there was a noticeable increase of the 88Sr signal. This may be due to impurity in the Ca standard. The Sr concentration is about 0.4 ng mL−1 in the Ca standard used in this study. The 44Ca2+ interference for 88Sr should be relatively low, as the natural abundance of 44Ca (2.09%) is much lower than 40Ca (96.94%). Nonetheless, the natural abundance of the other stable isotopes of Sr, 84Sr (0.56%), 86Sr (9.86%), and 87Sr (7%), is much lower than 88Sr (82.58%). At low ng mL−1 levels, the intensity of those isotopes from ICP-MS measurement is too low to be reliable. Therefore, 88Sr is still the most preferable Sr isotope for analysis; however care may be needed when measuring it in Ca-rich samples. If the Ca concentration in samples is higher than 10 μg mL−1, a separate Ca calibration should be performed to measure the Ca interference with the analysis. The impurity in the standards should also be taken into consideration.
Certified materials | Element | Unit | Certified value | Measured value | Recovery (%) |
---|---|---|---|---|---|
a *: indicative values. **: values for information only. | |||||
BCR 414: plankton | As | μg g−1 | 6.82 ± 0.28 | 6.78 ± 0.24 | 99 ± 3 |
Cd | μg g−1 | 0.383 ± 0.014 | 0.385 ± 0.017 | 100 ± 4 | |
Cr | μg g−1 | 23.8 ± 1.2 | 23.3 ± 0.5 | 98 ± 2 | |
Cu | μg g−1 | 29.5 ± 1.3 | 30.7 ± 2.9 | 104 ± 10 | |
Mn | μg g−1 | 299 ± 12 | 290 ± 17.7 | 97 ± 6 | |
Ni | μg g−1 | 18.8 ± 0.8 | 18.8 ± 1.0 | 100 ± 5 | |
Pb | μg g−1 | 3.97 ± 0.19 | 3.78 ± 0.35 | 95 ± 9 | |
Se | μg g−1 | 1.75 ± 0.10 | 1.27 ± 0.7 | 73 ± 40 | |
V | μg g−1 | 8.10 ± 0.18 | 7.3 ± 0.68 | 90 ± 8 | |
Zn | μg g−1 | 112 ± 3 | 103.03 ± 7.5 | 92 ± 7 | |
Co* | μg g−1 | 1.43 ± 0.06 | 1.46 ± 0.21 | 102 ± 15 | |
K* | μg g−1 | 7.55 ± 0.17 | 7.33 ± 0.72 | 97 ± 10 | |
Fe* | mg g−1 | 1.85 ± 0.19 | 1.90 ± 0.13 | 103 ± 7 | |
Mo* | μg g−1 | 1.35 ± 0.20 | 1.54 ± 0.22 | 114 ± 16 | |
Sr* | μg g−1 | 261 ± 25 | 254 ± 20 | 97 ± 8 | |
Al** | mg g−1 | 1.80 ± 0.03 | 1.85 ± 0.16 | 103 ± 9 | |
Ba** | μg g−1 | 31 ± 2 | 26.17 ± 2.43 | 84 ± 8 | |
Br** | μg g−1 | 55 ± 1 | 33.90 ± 3.38 | 62 ± 6 | |
Ca** | mg g−1 | 65 ± 2 | 74.5 ± 7.8 | 115 ± 12 | |
Mg** | mg g−1 | 2.4 ± 0.08 | 2.48 ± 0.19 | 103 ± 8 | |
P** | mg g−1 | 12.3 ± 0.6 | 13.9 ± 1.07 | 113 ± 8 | |
Sn** | μg g−1 | 1.18 ± 0.12 | 0.40 ± 0.14 | 34 ± 12 | |
Tl** | μg g−1 | 0.047 ± 0.002 | 0.022 ± 0.006 | 47 ± 13 | |
Ti** | mg g−1 | 48 ± 5 | 45.62 ± 12.53 | 95 ± 26 | |
BCR 273: single cell protein | Ca | mg g−1 | 11.97 ± 0.14 | 11.02 ± 0.63 | 92 ± 5 |
K | mg g−1 | 2.22 ± 0.05 | 2.06 ± 0.09 | 93 ± 4 | |
P | mg g−1 | 26.8 ± 0.4 | 26.8 ± 0.4 | 100 ± 1 | |
Fe | mg g−1 | 0.156 ± 0.004 | 0.143 ± 0.007 | 92 ± 4 | |
Mg* | mg g−1 | 2.72 ± 0.11 | 2.72 ± 0.11 | 100 ± 4 |
The strains were cultured in duplicates and 12 samples were extracted. To evaluate the performance for the direct measurement, duplicate aliquots were taken from each sample for the ICP-MS analysis: one aliquot was directly diluted in the extraction buffer (20 mM Tris, pH 8.0) and the other has been acid digested in the same way as for the reference materials. As shown in Fig. 4, most values measured from digested proteins are comparable with those obtained by directly measuring the native proteins, indicating that the pre-treatment for these samples are unnecessary and this method is robust in measuring dissolved native proteins. The elements not listed in the figure are the ones that fall below the detection limits, suggesting an extremely low abundance of those elements in the proteins of E. huxleyi.
Fig. 4 Comparison between direct measurement of proteins in the native state and the measurement after acid digestion. |
The intracellular element compositions are listed in Table 5. The data are normalised to protein concentrations for easy comparison between strains. The variations between different E. huxleyi strains are negligible for some elements, such as Mo, Br and Tl. However, for other elements, there are significant differences between different strains (p < 0.01). An example is given in Table 6, in which the significance of Cu variation (normalised to protein concentration) between different isolated E. huxleyi strains are analysed by t-test, and the p values are labelled with different colours. Interestingly, the difference in Cu concentrations is insignificant (p > 0.05, green in Table 6) between strains isolated from the same environment: both OA1 and OA4 were isolated from North Sea, whilst OA15 and OA16 were isolated from the Southern Ocean. Intracellular Cu concentrations are generally higher in strains from the Southern Ocean than those from the North Sea. However, although Cu concentration data are not available from the exact location from which the strains were isolated, dissolve Cu concentrations are generally higher in the North Sea than in the Southern Ocean (Fig. S1†). Such an inverse relationship between intracellular Cu concentration and environmental concentration may arise because the strains from low Cu area have a better ability to acquire Cu, produce Cu-binding proteins, or store Cu intracellularly, since there is much more Cu in the laboratory growth media than in the natural environment (Table S1†). Nevertheless, the difference in intracellular Cu concentrations between strains from different environments are much more significant (p < 0.05, orange; p < 0.01, red), despite the fact that all the strains have been maintained under the same lab conditions for more than 6 years. This trend generally prevails across most elements analysed including Fe and Mn, whist in whole cell, this trend is not as significant. This suggests that the intracellular metal composition (metal content in metalloproteins) in these strains may be an indicator of the metal requirements of these strains that have evolved under different environmental chemistries. Nonetheless, these data demonstrate that the method is sufficiently sensitive to identify interstrain differences.
OA1 | OA4 | OA8 | OA15 | OA16 | OA23 | |
---|---|---|---|---|---|---|
31P | 19.2 ± 2.5 | 16.4 ± 1.6 | 16.4 ± 0.9 | 16.6 ± 1.8 | 14.5 ± 1.7 | 59.6 ± 4.9 |
24Mg | 14.6 ± 5.6 | 9.1 ± 2.7 | 15.3 ± 6.9 | 22.6 ± 5.5 | 7.6 ± 0. 6 | 25.8 ± 1.4 |
55Mn | 58.9 ± 3.2 | 59.1 ± 11.6 | 67.5 ± 7.5 | 57.7 ± 6.3 | 51.6 ± 7.3 | 149.3 ± 26.4 |
56Fe | 143 ± 86 | 152 ± 30 | 248 ± 49 | 251 ± 39 | 248 ± 18 | 313 ± 22 |
59Co | 12.5 ± 1.4 | 16.2 ± 2.4 | 18.5 ± 0.9 | 29.0 ± 2.2 | 13.3 ± 1.1 | 108 ± 16 |
60Ni | 3.11 ± 0.87 | 3.37 ± 1.00 | 2.85 ± 1.34 | 2.71 ± 1.22 | 3.06 ± 1.25 | 9.37 ± 3.46 |
63Cu | 7.4 ± 1.7 | 9.9 ± 1.2 | 13.0 ± 0.5 | 17.1 ± 1.3 | 17.4 ± 1.5 | 31.2 ± 2.9 |
66Zn | 49 ± 19 | 55 ± 14 | 71 ± 23 | 93 ± 18 | 55 ± 6 | 110 ± 35 |
88Sr | 636 ± 9 | 358 ± 41 | 466 ± 61 | 518 ± 74 | 350 ± 22 | 1189 ± 69 |
90Zr | 29.1 ± 5.0 | 21.0 ± 3.1 | 31.8 ± 3.7 | 63.7 ± 3.1 | 34.2 ± 3.1 | 82.2 ± 8.9 |
98Mo | 2.14 ± 0.38 | 2.42 ± 0.91 | 3.47 ± 0.62 | 5.10 ± 1.42 | 2.80 ± 1.10 | 4.66 ± 1.88 |
107Ag | 2.74 ± 0.21 | 1.82 ± 0.51 | 2.15 ± 0.47 | 2.14 ± 0.58 | 1.55 ± 0.18 | 4.45 ± 0.52 |
118Sn | 2.36 ± 1.30 | 1.48 ± 1.14 | 2.70 ± 2.07 | 2.10 ± 1.57 | 1.06 ± 0.73 | 3.74 ± 4.02 |
121Sb | 1.92 ± 2.04 | 1.08 ± 0.58 | 1.89 ± 1.22 | 1.62 ± 1.31 | 0.97 ± 0.58 | 3.50 ± 2.18 |
138Ba | 4.24 ± 0.86 | 2.36 ± 0.29 | 2.52 ± 0.22 | 4.04 ± 1.06 | 2.30 ± 0.42 | 6.28 ± 1.17 |
184W | 4.92 ± 0.81 | 3.33 ± 0.46 | 3.70 ± 0.85 | 3.22 ± 0.74 | 2.41 ± 0.12 | 7.36 ± 0.51 |
205Tl | 6.86 ± 1.15 | 6.66 ± 0.92 | 7.19 ± 0.59 | 5.79 ± 1.11 | 5.43 ± 0.75 | 6.59 ± 0.94 |
208Pb | 0.95 ± 0.08 | 0.53 ± 0.04 | 0.66 ± 0.10 | 0.62 ± 0.05 | 0.51 ± 0.02 | 1.57 ± 0.08 |
39K | 18.5 ± 3.6 | 24.0 ± 4.0 | 42.5 ± 8.4 | 27.4 ± 5.8 | 25.8 ± 4.0 | 64.8 ± 8.5 |
44Ca | 105 ± 49 | 45 ± 28 | 57 ± 35 | 59 ± 37 | 55 ± 24 | 161 ± 95 |
52Cr | 6.26 ± 0.82 | 3.90 ± 0.64 | 4.72 ± 0.84 | 5.45 ± 1.27 | 3.76 ± 0.30 | 11.24 ± 2.01 |
79Br | 11.2 ± 2.0 | 7.9 ± 2.9 | 7.3 ± 3.9 | 6.7 ± 2.9 | 12.0 ± 3.2 | 24 ± 12 |
Fig. 5 Whole cell metal-quota in different E. huxleyi strains (normalised to P). Data for OA strains are from this study and data for the strain ASM1 are from ref. 9. |
(P1K0.47Mg0.35Ca124)1000
Sr287Fe11.9Mn11.1Zn1.27Cu0.15Co0.26Mo0.1
Ni 0.42 Ga 0.12 Zr 1.14 Ag 0.03 Sn 0.01 Ba 0.25 W 0.01 Tl 0.02 V 0.2 Cr 0.12
This formula is comparable to that from ref. 9 for E. huxleyi, which is shown below:
(P1K0.84Mg0.13Ca142)1000
Sr336Fe3.5Mn7.1Zn0.38Cu0.07Co0.29Cd0.36Mo0.022
The quotas in both of formulas are within the same order of magnitude, and the differences are due to (1) the likely differences between strains isolated from different parts of the ocean, and (2) the differences between the two growth media, for example, our media has higher concentrations of Fe and Mn than ref. 9, but no addition of Cd (Table S1, ESI materials†).
In Fig. 6, the whole cell metal quota and the total intracellular metal quota (excluding the membrane fraction) of the E. huxleyi strains are directly compared. There are overlaps with these concentrations for some elements (e.g., Ni and Co), suggesting those elements that are high in the intracellular fractions, are most likely to bind with metalloproteins. While for other elements such as Fe and Mn, there were large differences between the whole cell and intracellular metal concentrations, indicating that these elements may be largely stored in the membrane fractions (e.g., metal-rich granules).24 The quotas of the extracted cytosol fractions are shown as follows:
(P1K0.36Mg0.28Ca0.2)1000
Sr2.7Fe1.8Mn0.56Zn0.49Cu0.11Co0.19Mo0.06
Ni 0.027 Ga 0.013 Zr 0.21 Ag 0.01 Sn 0.008 Ba 0.011 W 0.01 Tl 0.015 V 0.0005 Cr 0.047
The quotas for bio-essential elements in this formula are of the same order of magnitude to those found by ref. 9 for average cell quotas for 16 different species of phytoplankton:
(P1K1.7Mg0.56Ca0.5)1000
Sr5.0Fe7.5Zn0.8Cu0.38Co0.19Mo0.03
Compared to the whole cell element quota, the relative importance of some elements is greater in the cytosol fractions. For instance, Mn/Co in whole cell quotas is about 43, compared to a ratio in the cytosol fraction of about 3. The cellular requirements of elements such as Co may be under estimated by analysis of cell quotas alone. Furthermore, using the method in this study, we are able to measure many other elements that were overlooked in previous studies. The elements not present in ref. 9 are highlighted in bold above. The biological roles for those elements are currently unclear. It may be that those elements are imported mistakenly into cells without any essential role for biology, but it is also possible that those elements are essential for cells at trace levels. Further studies are needed to establish if specific metalloproteins produced by E. huxleyi require those elements as metal centres.
Nonetheless, it is clear that the whole cell element quotas are not equivalent to element requirements by cells. Phytoplankton cells may take up some elements but do not necessarily make use of them.42 Therefore, more work should be done in the future to investigate the element usage and storage strategy by phytoplankton under various environmental conditions and to further constrain the metal requirements of the phytoplankton to understand the chemical limitations on oceanic productivity in the past and future.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c8ja00031j |
This journal is © The Royal Society of Chemistry 2018 |