Lucy K.
Saunders
*a,
Harriott
Nowell
a,
Helen C. E.
Spencer
b,
Lauren E.
Hatcher
b,
Helena J.
Shepherd
bc,
Lynne H.
Thomas
b,
Charlotte L.
Jones
b,
Simon J.
Teat
d,
Paul R.
Raithby
be and
Chick C.
Wilson
b
aDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, UK. E-mail: lucy.saunders@diamond.ac.uk
bDepartment of Chemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK
cSchool of Physical Sciences, University of Kent, Canterbury, Kent CT2 7NH, UK
dAdvanced Light Source, Lawrence Berkeley National Lab, Berkeley, CA 94270, USA
eResearch Complex at Harwell, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, UK
First published on 9th May 2018
Nine new molecular complexes of the proton sponge 1,8-bis(dimethylamino)naphthalene (DMAN) with substituted benzoic acid co-formers have been engineered with varying component stoichiometries (1:
1, 1
:
2 or 1
:
3). These complexes are all ionic in nature, following proton transfer between the acid co-former and DMAN; the extracted proton is held by DMAN in all instances in an intramolecular [N–H⋯N]+ hydrogen bond. A number of structural features are common to all complexes and are found to be tunable in a predictable way using systematic acid co-former substitution. These features include charge-assisted hydrogen bonds formed between acid co-formers in hydrogen bonding motifs consistent with complex stoichiometry, and weak hydrogen bonds which facilitate the crystal packing of DMAN and acid co-former components into a regular motif. Possible crystal structure tuning by co-former substitution can aid the rational design of such materials, offering the potential to target solid-state properties that may be influenced by these interactions.
Molecular complexes of the proton sponge DMAN (1,8-bis(dimethylamino)naphthalene) with organic acids are an ideal set within which to explore methods of structure tuning. They are regular in their crystallisation behaviour forming very stable ionic complexes8 with common molecular packing motifs.9,10 Such complexes studied previously include DMAN in combination with benzene-1,2,4,5-tetracarboxylic acid, 4,5-di-chlorophthalic acid,11 maleic acid,12 benzene-1,2,3-tricarboxylic acid,13 chloranilic acid,14 1,2-dichloromaleic acid15 and a range of halo benzoic acids.16,17 In these complexes, DMAN typically extracts a proton from the organic acid inducing the formation of O–H⋯O− charge-assisted hydrogen bonds (CAHBs) between acid molecules.11,15,16,18 The extracted proton is held by the DMAN molecule in an asymmetric19–22 intramolecular [N-H⋯N]+ hydrogen bond (IHB).11 The association of the DMAN:
acid components in the crystal packing consistently occurs via weak HB interactions in an assembly where the hydrogen bonded acid (ACID−) unit is oriented towards the DMAN cation methyl groups and IHB (Scheme 1).9
![]() | ||
Scheme 1 The crystal packing of the DMANH+ cation and ACID− anion via weak hydrogen bonding interactions; the hydrogen bonded acid (ACID−) unit is oriented towards the DMAN cation methyl groups. |
For complexes reported to date, modifications to the ACID− component are found to alter both the charge-assisted and weak hydrogen bonding components of the crystal packing.9–11 In this work, acid co-former substitution is demonstrated as a method to tune aspects of these charge-assisted and weak hydrogen bonding interactions in a predictable way including formation of molecular motifs and interaction lengths. Nine molecular complexes of DMAN have been prepared with a range of organic acid co-formers (Scheme 2) substituted with either electron donating (ED) or electron withdrawing (EW) groups.23–26 In this set, there are clear and predictable differences in both the charge-assisted and weak HBs formed on swapping between the ED and EW substituent groups, related to the differing effects of the co-former substituent groups on the acid co-former carboxylate, formed following deprotonation by DMAN.
Complex | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
---|---|---|---|---|---|---|---|---|---|
Wavelength (Å)/radiation (Kα) | 0.6889 | 0.8856 | Mo | 0.8856 | 0.8856 | Cu | Cu | 0.8856 | 0.8856 |
Formula | C28H30N2O6 | C28H32N4O4 | C84H104N12O16 | C30H34N2O6 | C38H33N5O6 | C38H33N5O6 | C35H33N5O12 | C22H23N3O6 | C21H23N3O4 |
Mol. W (g mol−1) | 490.54 | 488.57 | 1537.79 | 518.59 | 655.69 | 655.69 | 715.66 | 425.43 | 381.42 |
T (K) | 100 | 100 | 150 | 100 | 150 | 150 | 150 | 100 | 100 |
Space group | P21/c | P21/c |
P![]() |
P21/c | P21/c | P21/c |
P![]() |
P21/c | P21/n |
a (Å) | 11.4729(5) | 9.8631(4) | 13.3902(6) | 9.8917(4) | 11.2829(4) | 21.6378(4) | 14.6269(4) | 7.4488(3) | 10.3320(4) |
b (Å) | 14.6030(3) | 21.3774(9) | 17.4977(7) | 23.8954(9) | 12.5029(5) | 9.17650(10) | 18.1672(5) | 16.1665(7) | 18.3951(7) |
c (Å) | 14.7655(5) | 12.5572(5) | 19.3081(9) | 12.0958(5) | 23.4257(10) | 18.3236(3) | 20.9527(6) | 16.8622(8) | 10.3744(4) |
α (°) | 90 | 90 | 85.639(4) | 90 | 90 | 90 | 93.416(2) | 90 | 90 |
β (°) | 91.920(3) | 110.968(2) | 70.634(4) | 112.040(2) | 90.718(2) | 112.447(2) | 104.461(3) | 99.229(2) | 103.652(2) |
γ (°) | 90 | 90 | 69.986(4) | 90 | 90 | 90 | 107.500(3) | 90 | 90 |
Volume (Å3) | 2472.4(2) | 2472.3(2) | 4006.6(3) | 2650.1(2) | 3304.4(2) | 3362.66(10) | 5086.9(3) | 2004.3(2) | 1916.0(1) |
Z | 4 | 4 | 2 | 4 | 4 | 4 | 6 | 4 | 4 |
ρ calc (g cm−3) | 1.318 | 1.313 | 1.275 | 1.300 | 1.318 | 1.295 | 1.402 | 1.410 | 1.322 |
μ (mm−1) | 0.086 | 0.112 | 0.089 | 0.116 | 0.115 | 0.729 | 0.906 | 0.136 | 0.119 |
θ range (°) | 1.721–25.502 | 2.374–39.340 | 3.270–27.485 | 2.124–33.661 | 2.167–33.716 | 4.422–71.910 | 3.301–74.703 | 2.188–42.136 | 2.759–41.120 |
Reflections collected | 21![]() |
41![]() |
41![]() |
37![]() |
46![]() |
23![]() |
37![]() |
37![]() |
34![]() |
Independent | 5028 | 7542 | 17![]() |
5439 | 6806 | 6514 | 20![]() |
7291 | 6559 |
Observed I > 2σ | 3691 | 5867 | 7611 | 3754 | 4353 | 5571 | 16![]() |
5697 | 4927 |
R int | 0.0661 | 0.042 | 0.0645 | 0.0561 | 0.0899 | 0.0306 | 0.0226 | 0.0328 | 0.0525 |
Completeness (%) | 99.7 | 99.9 | 96.4 | 99.9 | 100.0 | 98.5 | 99.9 | 100.0 | 99.9 |
Parameters | 445 | 453 | 1271 | 479 | 574 | 574 | 1801 | 372 | 345 |
GooF | 1.04 | 1.032 | 0.984 | 1.025 | 1.006 | 1.019 | 1.021 | 1.024 | 1.026 |
R 1 (observed) | 0.0436 | 0.0445 | 0.0793 | 0.045 | 0.0474 | 0.0418 | 0.0396 | 0.0455 | 0.0481 |
R 1 (all) | 0.0697 | 0.0609 | 0.1953 | 0.0803 | 0.0942 | 0.0487 | 0.0524 | 0.0636 | 0.0713 |
wR2 (all) | 0.1092 | 0.1215 | 0.2161 | 0.1022 | 0.112 | 0.1117 | 0.1083 | 0.1232 | 0.1266 |
Δρ (max, min) (e Å−3) | 0.228, −0.229 | 0.437, −0.285 | 0.66, −0.62 | 0.189, −0.275 | 0.277, −0.246 | 0.207, −0.245 | 0.489, −0.423 | 0.463, −0.281 | 0.424, −0.284 |
The association of acid co-formers via O–H⋯O− CAHBs in 1–8 generates a range of HB motifs particular to the class of substituent group and complex stoichiometry (Table 2). HB acid dimers (DIMER−) are formed in all the molecular complexes where the acid co-former substituent is ED (1–4); in this motif a deprotonated ACID− and neutral ACID are linked via a single O–H⋯O− CAHB (Fig. 1). 1–4 are also all 1:
2 DMAN organic acid molecular complexes. Four symmetry independent acid DIMERs− form in 3. The DIMER− motif occurs where the carboxylate negative charge is more concentrated at a single oxygen atom site by the ED substituent group; this site may then be favoured over the other for CAHB formation. The DIMER− HB motif is seen in similar 1
:
2 DMAN halobenzoic acid molecular complexes (see Footnote‡).16 There are angular variations between the DIMER− HB motifs (Fig. 1 and Table S4†) with configurations that conform to the classes identified in the crystal structures of a range of DMAN halobenzoic acids.16 The HB DIMERs− in 2–4 adopt the more common pseudo linear conformation, either twisted linear or flat linear, whilst 1 has a less common bent conformation, similarly found in the related materials DMAN 4-bromobenzoic acid and DMAN 4-iodobenzoic acid.16 The DIMER− motifs are isolated and do not catenate further via O–H⋯O− CAHBs. An exception to this is in 1 where the hydroxyl substituent group allows additional O–H⋯O− CAHB links between DIMERs− and a two-dimensional HB sheet results.
Molecular complex | Substituent group class | HB motif | DMAN![]() ![]() |
---|---|---|---|
1 | ED | DIMER− | 1![]() ![]() |
2 | ED | DIMER− | 1![]() ![]() |
3 | ED | DIMER− | 1![]() ![]() ![]() ![]() |
4 | ED | DIMER− | 1![]() ![]() |
5 | EW | TRIMER− | 1![]() ![]() |
6 | EW | TRIMER− | 1![]() ![]() |
7 | EW | TRIMER− | 1![]() ![]() ![]() ![]() |
8 | EW | (ACID−)n | 1![]() ![]() |
9 | EW | — | 1![]() ![]() |
In the molecular complexes where the acid co-former substituent is EW, there are two possibilities for the HB motif. The more common is the formation of HB acid trimers (TRIMER−), where a deprotonated ACID− forms O–H⋯O− CAHBs to two neighbouring acid molecules (Fig. 2). This occurs for all 1:
3 DMAN organic acid molecular complexes (5–7); three symmetry independent acid TRIMERs− form in 7. The more disperse negative charge of the carboxylate with an EW substituent means that each oxygen atom may be equally susceptible to CAHB formation33 favouring the TRIMER− motif. In this motif, varying angles between the acid co-former components occur in each molecular complex (Table S5†).
![]() | ||
Fig. 2 The aggregation of ACID− and ACID co-formers into TRIMER− hydrogen bonded motifs via two O–H⋯O− CAHBs in complexes 5–7 (the three symmetry independent TRIMERs− are overlaid for 7). |
In general, the benzene rings of the co-formers linked by each O–H⋯O− CAHB in the TRIMER− motif are not co-planar, with an angle between the ring planes of approximately 70 to 90°. These TRIMER− motifs are isolated and do not catenate further via O–H⋯O CAHBs. TRIMER− HB motifs are less common for DMAN organic acid molecular complexes and for the association of carboxylate/carboxylic acid groups in general (see Footnote§). An alternative HB motif is formed in 8 where the acid co-former is substituted by a second carboxylic acid group. This is a 1:
1 complex. The O–H⋯O− CAHB forms between symmetry related acid co-formers in a one-dimensional HB chain (ACID−)n (Fig. 3). These chains are as found in other 1
:
1 molecular complexes of DMAN with multi-carboxylic acids including DMAN with benzene-1,2,3-tricarboxylic acid13 and with tartaric acid.18 The benzene rings of the acid co-former molecules in 8, when linked via the O–H⋯O− CAHBs, are significantly non-planar (twisted out of co-planarity by 62°). The donor–acceptor distances of the CAHBs across the molecular complexes here (Table S3 and Fig. S1†) tend to be longer for the TRIMER− HB motifs than when formed in the DIMER− and (ACID−)n HB motifs. This again appears related to the extent of carboxylate negative charge delocalisation; the shortest CAHB distances occur where the carboxylate negative charge is less disperse, indicated by the C–O− and C
O bond distances. 9 is a 1
:
1 complex similar to 8; however, as the co-former lacks a second carboxylic acid group, no O–H⋯O− CAHBs form in the structure following deprotonation by DMAN. It is unknown why 9 forms as a 1
:
1 complex but it is likely that this stoichiometry prevents behaviour equivalent to the other EW benzoic acid co-formers being observed; as found for the other EW complexes, the carboxylate bond distances in 9 indicate an increasingly delocalised negative charge (dC
O 1.248(2) and dC–O 1.254(1) Å) and so a TRIMER− might prevail in a 1
:
3 version of this complex if this could be synthesised. Both 8 and 9 have EW substituent groups yet form either an alternative (ACID−)n HB motif to the TRIMER− with a shorter CAHB O⋯O− donor–acceptor distance, as in 8, or no CAHB at all, as in 9. In the case of 8, the co-former is a dicarboxylic acid whose electronic structure will be additionally affected by the second carboxylic acid group explaining the differing behaviour. It may be that the predictions made here apply to benzoic acids only.
![]() | ||
Fig. 3 The aggregation of symmetry equivalent ACID− co-formers via O–H⋯O− CAHBs into one-dimensional (ACID−)n HB chains in 8. |
Weak C–H⋯O− HBs form the [Me2N–H⋯NMe2]+⋯X− motif where X− is the carboxylate group; there is also variation in the orientation of the acid anion DIMER− HB unit towards the [Me2N–H⋯NMe2]+ fragment (Fig. 4). The DIMER− has either a bisecting approach to the IHB, as in 2 and 4, or a flat approach, as in 1 and 3. The weak C–H⋯X− HB interactions in the [Me2N–H⋯NMe2]+⋯X− motif vary with the different nature of the available HB acceptors on the X− substituent group; these are C–H⋯N HBs in 5 and 6 and C–H⋯O HBs in 8 and 7. In this motif, the EW substituent group approaches the [Me2N–H⋯NMe2]+ fragment either side-on or tail-on (Fig. 5).
9 exhibits anomalous behaviour here. Despite the substituent group being EW, the less electronegative carboxylate group is oriented towards the [Me2N–H⋯NMe2]+ fragment and the weak interactions are C–H⋯O− HBs. This may be due to the 1:
1 stoichiometry of components for this system; the carboxylate group is oriented towards the [Me2N–H⋯NMe2]+ fragment where there is no additional co-former molecule to stabilise its negative charge, unlike in the other molecular complexes here.
The lengths of the weak C–H⋯X− interactions across the complexes are generally shorter where X− is the carboxylate than where X− is the EW substituent group (Tables S6 and S7, Fig. S2†). Unlike the carboxylate group, the EW substituent is not formally charged; in this situation the electrostatic component of the weak C–H⋯X− HB interactions is reduced resulting in longer C⋯X− distances (the positively charged [Me2N–H⋯NMe2]+ fragment interacts with a weaker partial charge on the EW substituent group).36 The weak C–H⋯X− HB interactions also tend to be shortest to the protonated dimethylamino (Me2N1) (Fig. S2†); this is in line with the previously proposed multicentre character of [Me2N–H⋯NMe2]+⋯X− where weak minor interactions with X− can cause localisation of the proton in the [N–H⋯N]+ intramolecular IHB.9
The refined hydrogen atom positions in the IHBs indicate an asymmetrically located proton in 2, 3 (DMAN H1C), 4, 6, 7 and 9 whilst symmetric positions are indicated in 1, 3 (DMANH1A and DMANH1B) and 8. Here, the refined positions are supported by the C–N distances and structural parameters of the DMANH+ molecules (Tables S9 and S10†). An asymmetry in the position of the IHB proton is mirrored by an asymmetry in the C–N distances and structural parameters on either side of the DMANH+ cation.
Weak interactions dominate the packing of the DMANH+ cations in the molecular complexes reported here. Contacts between the cations include weak π–π and/or methyl⋯π interactions involving DMANH+ methyl and naphthalene ring groups. DMANH+ packing motifs vary on co-former substitution (Fig. 6). Packing of cations occurs anti-parallel in pairs with varying degrees of overlap, either as an isolated stack (2, 4), an offset pair (7) or in a continuous column (3, 8, 9). Alternatively, in several cases (1, 5, 6) DMANH+ cations pack in one-dimensional chains through the structure. Stoichiometry, rather than substituent group, has an effect on DMANH+ packing, as found elsewhere;16 here it can be seen that the cations in the 1:
1 and 1
:
2 complexes have a tendency to stacking which is not seen in the 1
:
3 complexes in which cation packing is more flat through the structure.
Footnotes |
† Electronic supplementary information (ESI) available: Crystal structure refinement details; selected molecular geometry tables, selected hydrogen bond tables, fingerprint plots/Hirshfeld surfaces. CCDC 1831638–1831646. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c8ce00443a |
‡ In related molecular complexes of DMAN with halobenzoic acids,16 where the substituent group is a halogen, the acid DIMER− HB motifs prevail. Halogen substituents are electron withdrawing by induction but have similar resonance effects to ED substituent groups.26 This may be why DIMER− HB motifs are found in these complexes; the carboxylate C–O and C![]() |
§ A survey of the Cambridge Structural Database (CSD, version 5.38 November 2016)44 for carboxyl carboxylate catemers in organic only systems (based on O–H⋯O− contacts between RCO2− and either a single RCO2H forming a DIMER− or to two RCO2H forming a TRIMER−, where R is any group) indicated that catenated DIMERs− were more prevalent occurring in 1653 instances in contrast to 302 instances for TRIMERs−. |
¶ In previously reported molecular complexes of DMAN with halobenzoic acids,16 X− is also the carboxylate group despite the halogen substituent groups being more electronegative. |
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