Chang
Liu
,
Yan-Lei
Hu
,
Wen-Jing
Deng
,
Qing-Shan
Pan
,
Jin-Tao
Yi
,
Ting-Ting
Chen
* and
Xia
Chu
*
State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P. R. China. E-mail: xiachu@hnu.edu.cn; chenting1104@hnu.edu.cn; Fax: +86-731-88821916; Tel: +86-731-88821916
First published on 15th November 2017
Cytochrome c (Cyt c) and caspase-3 are the key mediators in apoptotic signaling. As is known to all, the release of Cyt c from mitochondria is a vital caspase activation pathway and defines the point of no-return in cell apoptosis. However, it has not been reported that any fluorescence imaging tools could allow simultaneous visualization of Cyt c translocation and caspase-3 activation in apoptotic cells. Here, we develop a sensitive nanosensor that holds the capability of imaging of the released Cyt c from the mitochondria and a caspase-3 activation cascade reaction in apoptotic signaling. The nanosensor is constructed by the assembly of a fluorophore (Cy5)-tagged DNA aptamer on graphene nanosheets that have been covalently immobilized with a FAM-labeled peptide. After a spatially selective delivery into the cytoplasm, the Cy5-tagged DNA aptamer assembled on the nanosensor can bind with Cyt c released from the mitochondria to the cytoplasm and dissociate from graphene, triggering a red fluorescence signal. In addition, the caspase-3 activated by the Cyt c released to the cytoplasm can cleave the FAM-labeled peptide and result in a green fluorescence output. The nanosensor exhibits rapid response, high sensitivity and selectivity for in vitro assays, and high contrast imaging of Cyt c and caspase-3 in living cells. It also provides the method for the study of the kinetic relationship between the Cyt c translocation and caspase-3 activation through simultaneous imaging of Cyt c and caspase-3. The developed nanosensor described here will be an efficient and potential platform for apoptosis research.
Cytochrome c (Cyt c) exists commonly in the intermembrane space and on the surface of the inner membrane in mitochondria. During the early stage of apoptosis, mitochondria show structural and biochemical changes such as depolarization, swelling, increased permeability of the outer membrane, and release of proteins from the intermembrane space, including Cyt c and caspases.3 The Cyt c released from the mitochondria to the cytoplasm will trigger the activation of caspase family proteases.4 Caspases belong to a class of cysteine aspartase and play a key role during the induction and execution phases of apoptosis.5 Therefore, simultaneous imaging of these two specific molecular metabolites in living cells is vital for apoptotic studies.
So far, techniques for the fluorescence imaging of caspase activation are mainly based on fluorescence-labeled peptide substrates, they need complicated label techniques and commonly suffer from low imaging contrast.6–9 On the other hand, technologies have rarely been explored for imaging the Cyt c release in apoptotic cells. Current techniques for live-cell tracking of Cyt c translocation are related to the subcellular localization of Cyt c with a GFP tag or a short tetracysteine label.10,11 These techniques, however, always suffer from tedious operation to obtain intracellular expressing Cyt c and indirectly complex colocalization analysis of Cyt c with the mitochondria.
Therefore, the imaging methods for direct visualization of the released Cyt c from the mitochondria remain highly desirable. In addition, the tools allowing simultaneous fluorescence imaging of Cyt c release and caspase activation have not been discovered yet.
Graphene is a novel one-atom-thick two-dimensional carbon material. It can adsorb biomolecules, such as nucleic acids and peptides, through π–π stacking on its surface. This excellent adsorption capacity combined with efficient fluorescence quenching makes it particularly suitable for constructing a robust platform for biosensors.12–19 In addition, graphene oxide (GO) can be internalized efficiently into the cytoplasm of various types of cells due to the strong hydrophobic interaction with the lipid molecules of the cell membrane. So, researchers are increasingly concerned about exploiting GO for intracellular delivery and sensing studies in recent years.20 Recently, efforts toward the construction of intracellular biosensors have been explored by using an aptamer or a nucleic acid-adsorbing GO nanocomplex for the detection of various important biomolecules in living cells.21–28 Our group has also designed a peptide–GO or an aptamer–GO nanocomplex for the intracellular delivery of a peptide probe or a nucleic acid probe to detect protease activation or Cyt c release.29,30 However, the utility of GO to deliver multi-probes for simultaneous imaging of multiple biomolecules in living cells is still largely unexploited.
Considering the high correlation between Cyt c release and caspase activation in apoptotic signaling, we designed a nanosensor that allows simultaneous imaging of Cyt c release and caspase activation by covalently conjugating a peptide substrate and adsorbing an aptamer probe on the GO surface (Scheme 1). A peptide substrate was designed including three parts: a spacer peptide not cleavable by proteases at the N terminus, a proteolytic moiety DEVD (Asp-Glu-Val-Asp) peptide sequence that could be recognized specifically by caspase-3, and fluorescein (FAM)-labeled lysine at the C terminus. The peptide substrate was covalently conjugated on the GO surface to form the peptide–GO conjugate by using the succinimide coupling (EDC-NHS). Then, a fluorophore (Cy5) tagged 40-nucleotide DNA aptamer, which could bind selectively with Cyt c, was assembled on the peptide–GO conjugate. Because of the highly efficient quenching effect of GO, the as-prepared nanosensor displayed an extremely weak fluorescence signal. The nanosensor could be internalized by various types of cells into the cytoplasm while not penetrating into the mitochondria. In the process of cell apoptosis, the released Cyt c could bind with the aptamer to form an aptamer–Cyt c complex, resulting in the dissociation of the aptamer from the GO surface and producing highly red fluorescence. This allows direct visualization of the Cyt c release in apoptotic cells. The caspase-3 activated by Cyt c in the cytoplasm could further recognize and cleave the peptide substrate conjugated on the GO surface and deliver a strong green fluorescence. So, the nanoassembly enables simultaneous imaging of Cyt c release and the caspase-3 activation cascade reaction. Here, we demonstrate that GO could be used to deliver multi-probes for simultaneous imaging of multiple biomolecules in living cells.
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| Scheme 1 (a) Illustration of the synthesis of the GO–peptide–aptamer nanoassembly, (b) illustration of the fluorescence activation strategy for Cyt c release and caspase-3 activation imaging. | ||
000 rpm for 10 min, and then the supernatant was collected. To obtain the carboxylated GO, 125 mM NaOH and 42.9 mM ClCH2COONa were added to 1.5 mL GO suspension and sonicated for 1 h. Subsequently, the mixture was purified by dialysis for 2 days.29 In the conjugation of GO with the peptide, 1 mM EDC-HCl and 5 mM Sulfo-NHS were added to the carboxylated GO suspension dispersed in 0.1 M PB and sonicated for 1 h. After the mixture was adjusted to pH 8.0 with 1 mM NaOH, 1 mM caspase-3 specific peptide probe was added and stirred vigorously at 37 °C for 2 h. Finally, the GO–peptide conjugate was dialyzed for 2 days. Subsequently, the DNA aptamer was assembled on the GO–peptide conjugate. In order to optimize the amount of the GO–peptide conjugate, we have adopted titration with varying amounts of the GO–peptide conjugate, and the optimal amount was decided by a fluorescence decrease. In consideration of the highly efficient quenching effect of GO nanosheets on the Cy5-aptamer, it was supposed that the maximum amount of 50 nM aptamer should be assembled on the 15 μg mL−1 GO–peptide conjugate (Fig. S1†). Therefore, the GO–peptide–aptamer nanosensor was obtained by incubation of the 150 μg mL−1 GO–peptide conjugate with the 500 nM Cy5-tagged aptamer for 30 min in 10× PBS buffer (10× PBS, 100 mM KH2PO4/K2HPO4, 27 mM KCl, 1370 mM NaCl, pH 7.4).
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| Fig. 1 AFM images (left) and height profiles (right): (a) GO, (b) GO–peptide conjugate, and (c) GO–peptide–aptamer nanoassembly. | ||
For better demonstration of the chemical structure of the nanoassembly, infrared spectroscopy was recorded. Curve 1 in Fig. S2† shows three characteristic absorption peaks at 3400, 1710, and 1615 cm−1, evidencing the presence of –OH, C
O and C
C functional groups in the GO nanosheets. After treatment with chloroacetic acid, a strong absorption band at 1630 cm−1 appeared, which was the characteristic peak of COO−, confirming the formation of the carboxylate moieties COO− on the GO nanosheets. After conjugation with peptides, the appearance of a characteristic band at 1415 cm−1 (stretching vibration of –CO–NH–) and a small peak near 2930 cm−1 (stretching vibration of –CH2) implied the successful preparation of the GO–peptide conjugate. The characteristic absorption peak at 1045 cm−1 (stretching vibration of –C–O/–P–O) verified the aptamer assembly on the GO–peptide conjugate. Furthermore, BSA with a high concentration up to 200 g mL−1 could not displace the peptide from the GO nanosheets (Fig. S3†), which also demonstrated the covalent coupling of the peptide with the GO nanosheets.
The time-dependent responses of the nanoassembly to Cyt c and caspase-3 were subsequently examined (Fig. S4†). The introduction of Cyt c to the nanosensor resulted in a rapidly increased fluorescence signal at the first 200 s and then gradually reached to a maximum signal at 10 min, showing the fast response for Cyt c allowing the real-time imaging of Cyt c. However, the caspase-3 mediated cleavage reaction was relatively slow, and the maximum fluorescence signal was obtained after incubation for 1 h. The control experiments using caspase-2 or the addition of the inhibitor for caspase-3 showed no obvious fluorescence changes over time.
Next, we evaluated the performance of the nanosensor for the detection of Cyt c and caspase-3 in vitro. The fluorescence activation signals increased with the increasing Cyt c concentrations (Fig. 2c), and the fluorescence intensity at 664 nm correlated linearly with the concentrations of Cyt c (Fig. 2d), implying that the nanosensor could detect the Cyt c successfully. The linear response range (300 nM–11 μM) covered the literature values of intracellular Cyt c (1–10 μM). Therefore, this nanosensor offered a highly sensitive and selective platform to quantitatively determine the Cyt c in apoptosis studies. In addition, the response of the nanosensor to caspase-3 was also investigated. The fluorescence intensity at 525 nm increased with the increasing caspase-3 concentrations (Fig. 2e), with a linear range of 28–448 ng mL−1 (Fig. 2f), proving that the nanosensor could be used to detect caspase-3 sensitively in living cells.
We also investigated the selectivity of the nanosensor. The species probably coexisting with Cyt c and caspase-3, such as AA, lys, GKACGS, β-D-glucosidase, HRP, rlys-c, cys and BSA were incubated with the nanosensor, and fluorescence signals are shown in Fig. 3. The results revealed that these species did not interfere with the detection of Cyt c or caspase-3, indicating the high selectivity of the nanosensor.
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| Fig. 3 Selectivity of the nanosensor for Cyt c (10 μM) and caspase-3 (450 ng mL−1) over other species (1 mM). | ||
The cytotoxicity of the nanosensor was evaluated by performing the CCK-8 assay with HeLa cells at different nanosensor concentrations (Fig. S5†). The results showed that the nanosensor had very low toxicity, and the cell viability remained at 83% even at a high nanosensor concentration up to 200 μg mL−1, implying that this nanosensor did not result in cell apoptosis at a concentration of 15 μg mL−1 used in the work.
Next, we performed the imaging of Cyt c translocation and caspase-3 activation in apoptotic cells. After incubation with the nanosensor in the serum-free RPMI-1640 medium at 37 °C for 3 h, the HeLa cells showed an extremely weak fluorescence signal either a green or a red channel, indicating the spatial isolation of the nanoassembly from Cyt c in the intermembrane space of the mitochondria (Fig. 4a). When the cells were treated for 1 h with 0.5 μM staurosporine (STS), an apoptosis inducer that triggers Cyt c during the release of mitochondria to the cytoplasm, the bright red and green fluorescence images could be obtained, implying that the nanosensor could probe the Cyt c translocation event and caspase-3 activation caused by Cyt c (Fig. 4b). In contrast, when the cells were pretreated with pepstatin A, an inhibitor that prevents Cyt c release and caspase-3 activation, no substantial fluorescence changes could be observed even when incubated with STS (Fig. 4c). In addition, the treatment with Z-DEVD-FMK, a strong caspase-3 inhibitor, resulted in a bright red fluorescence and a weak green fluorescence (Fig. 4d). These results provided sufficient evidence that the nanosensor could specifically detect the intracellular Cyt c translocation and caspase-3 activation. The corresponding flow cytometric assay was also performed (Fig. S7†). The cells induced by STS showed a significant fluorescence increase. The pretreatment of the cells with pepstatin A displayed no obvious increase in either the red fluorescence or the green fluorescence. However, upon incubation with Z-DEVD-FMK, the cells gave a bright red fluorescence but the green fluorescence was very weak. These results were consistent with those obtained in the fluorescence imaging experiment.
The nanosensor was subsequently utilized to monitor the release of Cyt c and the activation of caspase-3 in apoptotic cells in real-time. As shown in Fig. 5, an appreciable red fluorescence appeared at 15 min after the addition of 0.5 μM STS, and the fluorescence intensity reached a maximum value at 25 min. The result indicated that the release of Cyt c was very rapid and completed within ∼10 min. On the other hand, it could be observed that a green fluorescence signal appeared at 30 min after the addition of 0.5 μM STS, and reached a maximum signal at ∼60 min.31–33 These results provided the straightforward evidence that Cyt c release from the mitochondria to the cytoplasm was followed by the activation of caspase-3 during cell apoptosis, and it was consistent with the recognized apoptotic signaling in which cytoplasmic Cyt c was responsible for the caspase-3 activation.34
Besides the ability to elucidate the apoptotic signaling pathway in living cells, the nanosensor had the potential to screen the apoptosis-inducing compounds for drug development. To demonstrate this possibility, we investigated five candidate compounds including digitonin, sodium ascorbate, STS, cisplatin and etoposide. After incubation with the nanosensor for 3 h, the HeLa cells were treated with the individual compound (2 μM) for additional 1 h. As shown in Fig. S8a,† the cells treated with STS showed the brightest fluorescence images both in green and red channels, followed sequentially by etoposide, cisplatin and sodium ascorbate, and no fluorescence signal appeared for digitonin. The results proved STS to be the most effective apoptosis reagent. Although digitonin could destroy plasma membranes, it did not induce apoptosis and, therefore, showed no fluorescence activation. Moreover, the flow cytometric assay was also carried out to verify the results obtained by the five candidate compounds (Fig. S8b†). The results were consistent with those obtained by fluorescence imaging. These results suggested that the nanosensor provided a viable platform for cell-based screening of apoptosis-inducing drugs.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: 10.1039/c7an01515a |
| This journal is © The Royal Society of Chemistry 2018 |