 Open Access Article
 Open Access Article
Qi Luoab, 
Zhen Wangc, 
Jin-Feng Luoc, 
Zheng-Chao Tu*c and 
Yong-Xian Cheng *ad
*ad
aState Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Kunming 650204, People's Republic of China. E-mail: yxcheng@mail.kib.ac.cn
bUniversity of Chinese Academy of Sciences, Yuquan Road 19, Beijing 100049, People's Republic of China
cDrug Discovery Pipeline, Guangdong Provincial Key Laboratory of Biocomputing, Guangzhou Institutes of Biomedicine and Health, Guangzhou 510530, People's Republic of China. E-mail: tu_zhengchao@gibh.ac.cn
dSchool of Pharmaceutical Sciences, Shenzhen University Health Sciences Center, Shenzhen 518060, People's Republic of China
First published on 2nd August 2017
Applanatumines B–D (1–3), three pairs of dimeric meroterpenoid enantiomers featuring the presence of a 6-oxo-4,4a,5,5a,6,8,8a,8b-octahydrofuro[3′,4′:4,5]cyclopenta[1,2-b]pyran-3-carbaldehyde structure core, were isolated from the fruiting bodies of Ganoderma applanatum. Their structures and absolute configurations were assigned by using spectroscopic methods and ECD calculations. Biological evaluation found that all the compounds are JAK3 inhibitors. In addition, the enantiomers of 1 are active towards DDR1 with IC50 values of 8.2 ± 0.8 μM and 6.9 ± 0.8 μM. Finally, a plausible biogenic pathway for compounds 1–3 was proposed.
Janus kinase 3 (JAK3), discoidin domain receptor 1 (DDR1), histone deacetylase 1 (HDAC1) and bromodomain-containing protein 4 (BRD4) have emerged as promising drug targets for a number of diseases such as cancer, fibrosis, and rheumatoid arthritis.15–17 In consideration of wide applications of Ganoderma species, it is therefore necessary to examine whether substances in this genus possess inhibitory activities towards the above established targets. With this motivation, we have conducted a chemical investigation focusing meroterpenoids in Ganoderma applanatum and reported structurally novel applanatumine A.6,7,18 In a follow up study on this fungus, applanatumines B–D (1–3) (Fig. 1), three pairs of novel dimeric meroterpenoid enantiomers, were characterized and their biological activities against JAK3, DDR1, HDAC1, and BRD4 were evaluated.
(±)-Compound 1 was obtained as yellow gum with the molecular formula of C32H30O13 determined by analysis of its HRESIMS (m/z 621.1605 [M − H]−, calcd for C32H29O13, 621.1614), 13C NMR and DEPT data, indicating 18 degrees of unsaturation. The 1H NMR spectrum (Table 1) contains two typical ABX proton coupling systems [δH 7.36 (1H, d, J = 2.8 Hz, H-3), 7.01 (1H, dd, J = 8.8, 2.8 Hz, H-5) and 6.79 (1H, d, J = 8.8 Hz, H-6)] and [δH 7.18 (1H, d, J = 2.8 Hz, H-3′), 7.01 (1H, dd, J = 8.8, 2.8 Hz, H-5′) and 6.81 (1H, d, J = 8.8 Hz, H-6′)], suggesting the presence of two 1,2,4-trisubstituted benzene substructures.
| No. | 1 | 2 | 3 | |||
|---|---|---|---|---|---|---|
| δH | δC | δH | δC | δH | δC | |
| a Overlapped signals by measured solvent.b Signals were assigned by HMBC experiment. | ||||||
| 1 | 156.4 | 149.0 | 149.1 | |||
| 2 | 120.8 | 123.4 | 123.3 | |||
| 3 | 7.36 d (2.8) | 115.8 | 6.49 d (2.6) | 113.4 | 6.50 d (2.8) | 113.6 | 
| 4 | 150.7 | 151.5 | 151.4 | |||
| 5 | 7.01 dd (8.8, 2.8) | 125.7 | 6.61 dd (8.6, 2.6) | 117.3 | 6.62 dd (8.6, 2.8) | 117.3 | 
| 6 | 6.79 d (8.8) | 119.6 | 6.68 d (8.6) | 117.3 | 6.69 d (8.6) | 117.4 | 
| 7 | 204.7 | 6.26 br s | 79.9 | 6.26 br s | 80.0 | |
| 8 | 4.05 s | 37.3b | 7.47 br s | 151.1 | 7.47 br s | 151.0 | 
| 9 | 128.4b | 133.2 | 133.3 | |||
| 10 | 172.4b | 176.6 | 176.7 | |||
| 11 | 7.03 t (4.0) | 142.2b | 2.37 m | 23.6 | 2.38 m | 23.5 | 
| 12 | Ha 2.53 m | 35.0 | Ha 1.86 m | 34.5 | Ha 1.86 m | 34.8 | 
| Hb 2.30 m | Hb 1.64 m | Hb 1.63 m | ||||
| 13 | 2.65 dd (8.5, 4.7) | 30.0 | 2.52 dd (8.5, 4.7) | 29.3 | 2.53 dd (8.5, 4.7) | 29.2 | 
| 14 | 120.5 | 121.4 | 121.3 | |||
| 15 | 7.51 s | 166.5 | 7.49 s | 166.3 | 7.48 s | 166.4 | 
| 16 | 9.22 s | 193.3 | 9.22 s | 193.4 | 9.23 s | 193.4 | 
| 1′ | 156.4 | 156.4 | 156.4 | |||
| 2′ | 120.2 | 120.1 | 120.1 | |||
| 3′ | 7.18 d (2.8) | 115.3 | 7.18 d (2.6) | 115.3 | 7.18 d (2.6) | 115.3 | 
| 4′ | 150.9 | 150.8 | 150.8 | |||
| 5′ | 7.01 dd (8.8, 2.8) | 126.5 | 7.03 dd (8.8, 2.6) | 126.5 | 7.02 dd (8.8, 2.6) | 126.5 | 
| 6′ | 6.81 d (8.8) | 119.9 | 6.80 d (8.8) | 119.9 | 6.80 d (8.8) | 119.9 | 
| 7′ | 204.7 | 204.7 | 204.7 | |||
| 8′ | Ha 3.79 d (19.0) | 48.3 | Ha 3.78 d (19.0) | 48.5 | Ha 3.79 d (19.0) | 48.5 | 
| Hb 3.43 d (19.0) | Hb 3.42 d (19.0) | Hb 3.42 d (19.0) | ||||
| 9′ | 53.0 | 53.0 | 53.0 | |||
| 10′ | 181.8 | 181.9 | 181.9 | |||
| 11′ | Ha 2.24 dd (13.5, 7.2) | 41.3 | Ha 2.20 dd (13.4, 7.3) | 41.0 | Ha 2.22 dd (13.4, 7.3) | 41.0 | 
| Hb 1.63 t-like (13.5) | Hb 1.61 t (13.4) | Hb 1.61 t (13.4) | ||||
| 12′ | 2.37 m | 40.1 | 2.46 m | 39.9 | 2.46 m | 39.9 | 
| 13′ | 4.85a | 81.7 | 4.85a | 81.6 | 4.85a | 81.6 | 
| 14′ | 3.21 d (7.6) | 55.1 | 3.21 d (7.5) | 54.9 | 3.21 d (7.6) | 54.9 | 
| 15′ | 5.94 d (7.6) | 105.7 | 5.94 d (7.5) | 105.6 | 5.94 d (7.6) | 105.6 | 
| 16′ | 3.63 s | 59.0 | 3.64 s | 58.8 | 3.64 s | 58.9 | 
The 13C NMR and DEPT spectra of 1 (Table 1) contain 32 resonances attributable to a methyl (oxygenated), four methylenes, fourteen methines (eight olefinics, an aldehyde group), thirteen quaternary carbons (eight sp2, two ketones, two carboxylic carbonyls, and an aliphatic carbon). The partial signals occur as pairs, suggesting that 1 might be a meroterpenoid dimer consisting of parts A (black drawing) and B (blue drawing) (Fig. 2). The ABX coupling pattern, the chemical shifts of C-1 (δC 156.4) and C-4 (δC 150.7), and HMBC correlations of H-3/C-7, H-11/C-8 (δC 37.3), and ROESY correlation of H-3/H-8 indicate the substructure of C-1–C-10. The HMBC correlations of H-15 (δH 7.51)/C-13, C-14, C-16 (δC 193.3), C-13′ (δC 81.7); H-13/C-13′; and H-16 (δH 9.22)/C-13, C-14, C-15 (δC 166.5), in combination with a 1H–1H COSY correlation of H-13/H-12′ (Fig. 2) indicate the existence of ring A with an aldehyde group attached to C-14. Further, the HMBC correlations of H-11/C-8, C-10, and COSY correlation of H-12/H-13 were observed, which reveals the presence of part A as shown. In addition to the signals for part A, the residual signals resemble those of lingzhilactone C, a meroterpenoid previously isolated from G. lingzhi.5 This conclusion gains supports from 2D NMR data, which show important interactions such as HMBC correlations of H-13′/C-9′, C-11′; H-14′/C-9′, C-10′, C-12′, C-13′, C-15′; H-15′/C-10′ and COSY correlations of H-9′/H-11′/H-12′ and H-14′/H-15′, indicating the ring systems in part B. Finally, parts A and B are connected via C-12′–C-13′ supported by the observed 1H–1H COSY correlations of H-13/H-12′/H-11′ as well as above mentioned H-15/C-13′. As a result, the planar structure of 1 was determined.
|  | ||
| Fig. 2 Key 1H–1H COSY and HMBC correlations of 1, and ROESY correlation of H-3/H-8; blue, pink, red, and green in 1 represent four independent isoprenyl moieties. | ||
The relative configuration of 1 was assigned by a ROESY spectrum (Fig. 3), which shows correlations of H-12/H-12′, H-13′, indicating the relative configuration of ring A. The ROESY correlation of H-8′/H-14′ suggests that these two protons are at the same side of ring B. Further, the observed ROESY correlations between H-13/Ha-11′, Hb-11′ and H-8′, H-14′/Hb-11′ indicate the stereo relationship between rings A and B. As for the relative configuration at C-15′, the observed ROESY correlation of 15′-OMe/H-12′ and weak correlation H-15′/Ha-8′ evidently suggests that the orientation of H-15′. Therefore, the relative configurations at chiral centers of rings B and C were determined. Besides, there is one double bond Δ9(11) at the side chain of part A, whose geometry was assigned as E-form based on the observed ROESY correlation of H-8/Hb-12.
(±)-1 was isolated as a racemate (Fig. S25, ESI†), which further was separated by chiral-phase HPLC. In order to determine the absolute configuration of (+)-1 and (−)-1, the electronic circular dichroism (ECD) calculations were carried out. It was found that the ECD spectrum of (13R,9′R,12′R,13′S,14′S,15′S)-1 agrees well with the experimental one of (+)-1, leading to the assignment of the absolute configuration at the stereogenic centers (Fig. 4). Consequently, the structures of (+)-1 and (−)-1 were finally assigned and named (±)-applanatumine B.
|  | ||
| Fig. 4 Experimental and calculated ECD spectra of 1 at the B3LYP/6-311G(d,p) level in MeOH, σ = 0.3 eV. | ||
Simultaneously, a portion was purified by a semipreparative HPLC (Fig. S24, ESI†) to yield 2 (Rt = 17.5 min) and 3 (Rt = 19.8 min), and they are both racemic mixtures (Fig. S26 and S27, ESI†). Compounds 2 and 3 possess the same planar structure by analysis of their HRESIMS, 1D and 2D NMR data. Furthermore, a detailed interpretation of their 1D and 2D data (1–3), the only difference is that the existence of a five-membered lactone in 2 or 3, which was confirmed by the HMBC correlations of H-7/C-8 (δC 151.1), C-9 (δC 133.2), C-10 (δC 176.6), and H-8/C-7 (δC 79.9), C-9, C-10 (Fig. 5). The relative configuration of 2 was assigned by a ROESY spectrum which shows correlations of H-12′, H-13′/Hb-12, suggesting the relative configurations at C-13, C-12′, and C-13′. Likewise, the correlations of H-14′/Hb-8′, H-15′/Ha-8′, and 15′-OMe/H-12′, H-13′ (Fig. 3) reveal the relative configurations at C-9′, C-14′, and C-15′. As for the stereochemistry at C-7, it makes sense only to determine its absolute configuration.
Careful analysis of ROESY data of 3 reveals that compounds 3 and 2 bear the same relative configuration at C-13, C-9′, C-12′, C-13′, C-14′, and C-15′. Likewise, the assignment of stereochemistry at C-7 of 3 is challengeable. To clarify the absolute configuration at C-7, racemic 2 or 3 was submitted to chiral-phase HPLC to afford their respective enantiomers. By comparing the experimental spectra of 2 and 3, it was fortunately found that their experimental CD spectra have obvious difference at 197 nm and 207 nm [Δε197 −16.50, Δε207 +3.91 for (+)-2, no cotton effective for (+)-3], which makes it possible to use computational methods to solve the configuration at C-7. An effort of computation found that the calculated weighted ECD spectra of (7S,13R,9′R,12′R,13′S,14′S,15′S)-2 agree well with that of (+)-2 (Fig. 6 and 7). Hence, the absolute configurations of (+)-2 and (−)-2 were unambiguously assigned. In the same manner as that of 2, the absolute configurations of (+)-3 and (−)-3 were respectively assigned as 7R,13R,9′R,12′R,13′S,14′S,15′S and 7S,13S,9′S,12′S,13′R,14′R,15′R (Fig. 6 and 7). Obviously, (+)-3 is a 7-epimer of (+)-2.
|  | ||
| Fig. 6 The calculated ECD spectra and experimental spectra of (+)-2 and (+)-3 at the B3LYP/6-311G(d,p) level in MeOH, σ = 0.3 eV. | ||
Compounds 1–3 are novel meroterpenoid dimers. The formation of rings A–C leads to the presence of six continuous chiral centers in the structure, providing great challenge for synthetic chemistry. To aid total synthesis of this class of meroterpenoids, a plausible biosynthetic pathway was proposed. Compounds 1–3 are derived from the hybridization of shikimic acid pathway and mevalonic acid pathway18 (Scheme 1). First, two key intermediates A and B could be synthesized from 4-hydroxybenzonic acid (4HB)18 and isoprenyl moieties under geranyltransferase19 and VibMO1 (a monooxygenase).20 The intermediate A is further oxidized to give B. The monomer B could be cyclized via nucleophilic addition to generate C and F. In addition, the monomer E is formed by oxidation reaction and decarboxylization of C. Hence, 2 and 3 are further formed by a Diels–Alder reaction between E and F. Finally, the monomer G is formed by oxidation reaction and 1,3-hydrogen migration of B, and the ring A in 1 is formed via a Diels–Alder reaction between E and G.
| Compounds | IC50 (μM) | |||
|---|---|---|---|---|
| JAK3 | DDR1 | HDAC1 | BRD4 | |
| a NA: no activity. | ||||
| (+)-1 | 1.8 ± 0.9 | 8.2 ± 0.8 | 212.0 ± 53.2 | 38.9 ± 5.3 | 
| (−)-1 | 2.0 ± 0.9 | 6.9 ± 0.8 | 268.0 ± 0.2 | 46.5 ± 16.1 | 
| (+)-2 | 0.8 ± 0.7 | ∼10.0 | 19.1 ± 10.4 | 39.5 ± 5.9 | 
| (−)-2 | 6.1 ± 1.0 | NA | 45.4 ± 9.2 | 68.5 ± 19.4 | 
| (+)-3 | 3.8 ± 1.0 | NA | 46.6 ± 20.1 | 19.9 ± 8.0 | 
| (−)-3 | 3.8 ± 0.3 | NA | 36.1 ± 1.5 | 27.8 ± 1.5 | 
| Staurosporine | (0.3 ± 0.01) × 10−3 | |||
| Dasatinib | (13.2 ± 0.1) × 10−3 | |||
| JQ-1 | (2.4 ± 0.6) × 10−3 | 0.1 ± 0.06 | ||
![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 20
20![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 0.01%; (+)-2 (4.2 mg, Rt = 21.8 min), (−)-2 (4.3 mg, Rt = 25.9 min), n-hexane–EtOH, 80
0.01%; (+)-2 (4.2 mg, Rt = 21.8 min), (−)-2 (4.3 mg, Rt = 25.9 min), n-hexane–EtOH, 80![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 20; and [(+)-3 (5.6 mg, Rt = 20.4 min), (−)-3 (5.7 mg, Rt = 23.0 min), n-hexane–EtOH, 80
20; and [(+)-3 (5.6 mg, Rt = 20.4 min), (−)-3 (5.7 mg, Rt = 23.0 min), n-hexane–EtOH, 80![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) :
:![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) 20].
20].
![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) ε): 373 (3.51), 253 (3.91), 226 (4.00) nm; {[α]24D +163.8 (c 0.07, MeOH), CD (MeOH) Δε225 −17.08, Δε260 +38.26, for (+)-1; [α]24D −166.0 (c 0.05, MeOH), CD (MeOH) Δε224 +14.32, Δε260 −36.36, for (−)-1}; ESIMS: m/z 621 [M − H]−; HRESIMS: m/z 621.1605 [M − H]− (calcd for C32H29O13, 621.1614); 1H and 13C NMR data, see Table 1.
ε): 373 (3.51), 253 (3.91), 226 (4.00) nm; {[α]24D +163.8 (c 0.07, MeOH), CD (MeOH) Δε225 −17.08, Δε260 +38.26, for (+)-1; [α]24D −166.0 (c 0.05, MeOH), CD (MeOH) Δε224 +14.32, Δε260 −36.36, for (−)-1}; ESIMS: m/z 621 [M − H]−; HRESIMS: m/z 621.1605 [M − H]− (calcd for C32H29O13, 621.1614); 1H and 13C NMR data, see Table 1.
Applanatumin C (2): yellow gum, UV (MeOH) λmax (log![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) ε): 370 (3.53), 250 (4.17), 221 (4.25) nm; {[α]24D +159.3 (c 0.18, MeOH), CD (MeOH) Δε197 −16.50, Δε207 +3.91, Δε229 −13.10, Δε260 +39.30, for (+)-2; [α]24D −199.2 (c 0.16, MeOH), CD (MeOH) Δε197 +16.50, Δε208 −3.91, Δε229 +11.28, Δε260 −33.67, for (−)-2}; ESIMS: m/z 605 [M − H]−; HRESIMS: m/z 719.1590 [M + CF3COO]− (calcd for C34H30O14F3, 719.1593); 1H and 13C NMR data, see Table 1.
ε): 370 (3.53), 250 (4.17), 221 (4.25) nm; {[α]24D +159.3 (c 0.18, MeOH), CD (MeOH) Δε197 −16.50, Δε207 +3.91, Δε229 −13.10, Δε260 +39.30, for (+)-2; [α]24D −199.2 (c 0.16, MeOH), CD (MeOH) Δε197 +16.50, Δε208 −3.91, Δε229 +11.28, Δε260 −33.67, for (−)-2}; ESIMS: m/z 605 [M − H]−; HRESIMS: m/z 719.1590 [M + CF3COO]− (calcd for C34H30O14F3, 719.1593); 1H and 13C NMR data, see Table 1.
Applanatumin D (3): yellow gum, UV (MeOH) λmax (log![[thin space (1/6-em)]](https://www.rsc.org/images/entities/char_2009.gif) ε): 368 (3.62), 251 (4.24), 227 (4.30) nm; {[α]24D +208.9 (c 0.30, MeOH), CD (MeOH) Δε226 −13.03, Δε259 +30.31, for (+)-3; [α]24D −229.6 (c 0.33, MeOH), CD (MeOH) Δε225 +14.97, Δε260 −31.95, for (−)-3}; ESIMS: m/z 605 [M − H]−; HRESIMS: m/z 719.1587 [M + CF3COO]− (calcd for C34H30O14F3, 719.1593); 1H and 13C NMR data, see Table 1.
ε): 368 (3.62), 251 (4.24), 227 (4.30) nm; {[α]24D +208.9 (c 0.30, MeOH), CD (MeOH) Δε226 −13.03, Δε259 +30.31, for (+)-3; [α]24D −229.6 (c 0.33, MeOH), CD (MeOH) Δε225 +14.97, Δε260 −31.95, for (−)-3}; ESIMS: m/z 605 [M − H]−; HRESIMS: m/z 719.1587 [M + CF3COO]− (calcd for C34H30O14F3, 719.1593); 1H and 13C NMR data, see Table 1.
| Footnote | 
| † Electronic supplementary information (ESI) available: ECD calculation methods, 1D, 2D, HRESIMS spectra, and HPLC chromatograms. See DOI: 10.1039/c7ra04862a | 
| This journal is © The Royal Society of Chemistry 2017 |