A. A.
Rybakov
a,
A. V.
Larin
*a and
D. P.
Vercauteren
*b
aChemistry Department, Moscow State University, Leninskie Gory, Moscow, GSP-2 119991, Russia. E-mail: Nasgo@yandex.ru
bUniversity of Namur, Rue de Bruxelles 61, Namur, B-5000, Belgium. E-mail: daniel.vercauteren@unamur.be
First published on 13th July 2017
Our work is devoted to DFT calculations of the relative rotational and diffusional barriers for CO motions in zeolite NaY. The diffusion jump of CO adsorbed in NaY from NaII to Na′II has been confirmed as the favored way for CO re-coordination via either the C or the O atom to the Na cations instead of the CO rotation, hence explaining the mechanism which is responsible for the CO exchange between different positions and the changes in the intensities of the vibrational IR spectra. The fine structure of the vibrational C–O bands is explained by the different CO locations of adsorbed mono- and dicarbonyl species. The calculated activation energy of intra-cage CO diffusion from NaII–CO to Na′II–OC matches the respective experimental barrier observed in the NaX zeolite.
Another important field wherein the relation between molecular translations and rotations is extremely important is catalysis in zeolites and other solids. As recent theoretical studies, let us cite CO oxidation in the MgPHI zeolite,7 CO2 hydrolysis in the NaX zeolite,8 or CH3OH reaction with CuCO3Cu carbonate species in the CuMOR zeolite.9 In all cases, the orientation of the reagents (CO,7 CO2, H2O,8 CH3OH9) is determined by the media in the pores that can hardly be simulated at the cluster level. The knowledge of all allowed motions for the reagents with definite molecular properties (van der Waals radii, multipole moments, etc.) in a specific zeolite geometry under imposed conditions might be the decisive tip to predict the best position of the reactive center in the zeolite pores. In particular, the case of appropriate CO orientation and subsequent chemisorption in a periodic MgPHI model allowed a significant reduction in the CO oxidation barrier.7 Any new data on the restrictions of the CO motions will allow more accurate modeling of the CO dynamics in catalyzed reaction systems and will drastically reduce the number of candidate routes for time consuming modeling of reaction pathways.
Additional landmarks for CO diffusion can be found throughout a large number of IR studies of CO adsorption over alkali and earth alkaline form zeolites.3,10–15 Two main peaks are most often assigned to MeII–CO and MeII–OC orientations, with Me being the alkali or earth alkaline cation, and alternative interpretations appeared as a consequence of a cationic rearrangement. For NaY, Grey et al.16,17 and Mellot-Draznieks et al.18 observed, using XRD data, a decrease of NaI′ occupation and a formation of sites similar to the NaIII′ site in NaX in the presence of adsorbed C2F4H216,17 or CFCl318 species. Plant et al. admitted such a possibility of NaI′ migration to the NaIII′ site upon the influence of CO2 to model the cationic diffusion.19 An analogous influence of CO on the cationic positions in NaY and CuNaY later led to assigning the origin of the peaks to NaII–OC–NaIII and NaII–CO–NaIII sites20 even if the experimental data did not confirm the possibility of CO diffusion and interaction with NaI′ in sodalite units of NaY.10 One should note that analogous dual cationic sites for Me+–CO–Me+ were already confirmed in MeZSM-521 and MeFER,22 Me = Na21,23 or K,21,22 zeolites, on the basis of combined DFT modeling and IR experiments to interpret the intermediate bands observed between the monocarbonyl peaks related to either Me–CO or Me-OC orientations. If the NaIII or NaIII′ positions are occupied in NaY, then the NaII–OC (or CO)–NaIII (or NaIII′) dual sites20 should lead to similar intermediate peaks in NaY. Recently, we have modeled the migration of alkali cations between crystallographic positions in MeRHO (Me = Li, Na, K, Cs)24 and MeY (Me = K, Cs)25 upon formation of carbonate or hydrocarbonate anions whose interactions with cations have to be much more effective than the ones of CO and lead to cationic drift. Usually smaller CO interaction energies with cations stimulated us to verify the model of NaIII formation in NaY20 which should have direct consequences for the assignment of IR spectra.
The heats of the respective CO/OC exchanges were determined using van't Hoff dependences of the IR intensities,13,14,26 but, to our best knowledge, no mechanism of CO redistribution with temperature was proposed. Such a redistribution has been shown to take place for CO adsorbed in H- and any cationic form zeolites.15 At first glance, the evident idea of CO rotation might resolve the problem of the respective mechanisms. Some attempts to assign the fine structure of CO vibrational peaks in IR spectra in NaA27 and NaY28 to rotational transitions only (in contrast to CaA, NaX, and CaX where no separate peaks were found) were already undertaken many years ago but were not well evidenced. A modeling of the rotational structure of fundamental CO transition was undertaken by Förster et al. by analyzing possible barriers in NaA and NaCaA with a simplified model of a hindered rotator.29 However, the absence of band widening (due to rotational P- and R-branches) for CO/NaZSM-5 at higher temperatures (123–293 K) does not validate the possible CO rotation for all temperatures and for all zeolites because the intensity ratio of the CO vibrational transitions varies between the Me–CO/Me–OC bands within a wide range of temperatures.30 The hindrance of rotation is connected with electrostatic field and/or field gradient variations in the zeolite cages. If these properties decrease from the cation location towards the center of the zeolite Y cage, then almost free CO rotation is allowed far from the cation in monovalent Y forms. The hypothesis that the CO and OC forms can be connected via a diffusion jump between two different Me cations hence deserves attention. As seen from Fig. 1, the CO shift from NaII–CO to Na′II–OC does not require any essential CO axis rotation due to the tetrahedral symmetry of the FAU supercage. Because of the larger electrostatic field and/or field gradient in divalent zeolite forms, this hindrance may be supposed for CO rotation in divalent forms as well and also explain the absence of rotational branches in the vibrational bands of CO adsorbed in zeolites.
Computations of CO adsorption over zeolite clusters showed the necessity of accurate estimation of electrostatic forces31 so that Density Functional Theory (DFT) (for example, with VASP32,33) considering models with periodic boundary conditions (PBC) is needed. The computational scanning of the various Brønsted and Lewis sites in HMOR indeed demonstrated a variety of zeolite properties which can be obtained using a CO probe.34 Recently, various DFT functionals were compared for CO and NO adsorbed in transition metal form zeolites (CuCHA, CoCHA).35
The work presented here is devoted to the calculations of the rotational and diffusional barriers for CO motions in NaY. After the computational details (Section 2), we will discuss the results obtained with different DFT functionals regarding the geometries (Section 3.1), heats (Section 3.2), frequencies (Section 3.3), and barriers of CO rotation and of NaII–CO/Na′II–OC diffusion (Section 3.4) relative to known experimental data.
Cell parameters were first optimized for the NaY model with the total formula Na12Al12Si36O96. These cell parameters were then used in all further calculations. Full geometry optimizations were performed for each structure (products, reagents) with the fixed cell parameters and switched off symmetry. The climbing image nudged-elastic band method (ciNEB)43,44 was used to determine the minimum energy path from reagents to products and to locate the transition state structure. Initial images of the intermediate configurations for the NEB calculations were built with the scripts provided by the Transition State Tools for VASP. We assumed that the convergence for geometry optimizations and NEB calculations was reached when the forces on each atom were below 0.05 eV Å−1.
CO vibrational frequencies were calculated using the finite difference method (0.015 Å atomic displacements) as implemented in VASP. Atoms of either one CO or two CO molecules, the closest (one or two) Na cations, and the zeolite Oz atoms coordinated to the Na cations were allowed to move during the vibrational frequency calculations, while all other atoms were kept fixed. The error owing to fixation of the Oz zeolite atoms was estimated to be 1 cm−1. For all reactions, the transition states showed a single imaginary frequency corresponding to the reaction path. Figures of the optimized models were made with MOLDRAW2.0.45 Videos of chemical reactions and normal mode animations were made using wxMacMolPlt.46
Orientation | N | PBE | PBEsol | PBEsol-D2 | OptB86d |
---|---|---|---|---|---|
a One NaII is replaced by NaIII. b See the geometry in Fig. 2b. c See Fig. 2c. | |||||
— | — | 3935.6 | 3889.3 | 3917.5 | 3910.2 |
—a | 3920.7 | 3876.4 | — | 3880.3 | |
CO | 1 | 3935.5 | 3889.3 | 3858.4 | 3896.0 |
OC | 3935.3 | 3879.5 | 3849.3 | 3935.5 | |
2CO | 3935.6 | 3888.7b | 3848.2 | 3892.3 | |
CO, OC | 3935.6c | 3880.8 | 3847.6 | 3897.6 | |
2CO | 2 | 3935.6 | 3889.1 | — | 3909.6 |
ΔV | — | 0.008 | 0.26 | 1.79 | 0.64 |
![]() | ||
Fig. 2 Three-dimensional structure of a NaY cage with CO positions (a) between NaII and NaIII, or as (b) OC–NaII–CO or (c) CO–NaII–CO, and (d) NaII–CO optimized at the PBE (a and c), PBEsol (b), and PBEsol-D2 (d) levels. Dashed lines depict the |C–O| and |C/O–Na| distances (in Å) given (a) in Table S2 (ESI†) and (b, c and d) in Table 2. Two degenerate CO positions are shown in (d). The atom color code is the same as in Fig. 1. Linear arrows (non-scaled) illustrate the NaII and NaIII displacements (in Å) from the 6R and 4R planes, respectively, passing through the three nearest O neighbors. |
We also analyzed the consequence of Na shift from the NaII to NaIII site18–20 regarding the total energy (case 5 in Fig. 3), the IR spectra (Section 3.2), and the activation energy (Section S1, ESI†). The cell volumes with NaIII cations are coherently lower by −0.4, −0.3, and −0.8% with PBE, PBEsol, and optB86d, respectively, while the energies are less stable due to poor NaIII coordination by as much as 7.6, 6.1, and 5.8 kcal mol−1, respectively (see Table 2 and Table S2, ESI†). Let us also note that both DFT approaches with dispersion corrections we applied are less consistent relative to the volume perturbation due to CO adsorption. The variations of the volumes while adding either one or two CO molecules do not reveal a systematic trend (Table 1). For example, the cell optimization with one CO molecule for the NaII–CO or NaII–OC configurations led to opposite volume changes by −0.25 or 1.1% with PBEsol and optB86d, respectively. These large distortions look overestimated, while the minor change in the cell volume with one physisorbed molecule is more realistic with PBE, i.e., less than 0.008% in Table 1.
DFT | Case (N) | −U | −ΔU | |C–O| | |C/O–Na|a | |Na–Oz| | ω HF, ωLF | ΔωHF, ΔωLF |
---|---|---|---|---|---|---|---|---|
a The case of an O-connected CO molecule in dicarbonyls at one NaII (N = 1, Fig. 2c) and relevant cases for two NaII (N = 2) are marked by stars. b See Fig. 2c. c See Fig. 2b. d Starting geometry taken from the case with the total energy of −1082.96 eV to reach a more symmetric dicarbonyl structure with energy of −1083.00 eV. e Case shown in Fig. 2d. | ||||||||
PBE | — | 1161.21 | — | — | — | 3 × 2.360 | — | — |
CO | 1176.22 | 5.4 | 1.139 | 2.604 | 2.356, 2.378, 2.381 | 2179.6 | 44.1 | |
OC | 1176.13 | 3.3 | 1.146 | 2.542 | 3 × 2.378 | 2112.8 | −22.7 | |
CO, CO (2) | 1191.22 | 5.3 | 1.139, 1.139 | 2.618, 2.617 | 2.369, 2.372, 2.374, 2.363, 2.370, 2.383 | 2180.6, 2178.3 | 45.1, 42.8 | |
CO, OC (1)b | 1191.05 | 3.3 | 1.139, 1.146 | 2.674, 2.802* | 2.406, 2.423, 2.424 | 2192.3, 2122.3 | 56.8, −13.2 | |
2CO (1) | 1191.11 | 4.0 | 1.140, 1.140 | 2.682, 2.833* | 2.415, 2.440, 2.446 | 2172.8, 2163.8 | 37.3, 28.3 | |
2OC (1) | 1190.96 | 0.3 | 1.146, 1.146 | 2.802*, 2.766* | 2.407, 2.421, 2.422 | 2119.8, 2113.9 | −15.7, −21.6 | |
PBEsol | — | 1129.31 | — | — | — | 3 × 2.336 | — | — |
CO | 1144.13 | 6.2 | 1.137 | 2.569 | 2.333, 2.353, 2.355 | 2192.6 | 39.3 | |
OC | 1144.04 | 4.1 | 1.145 | 2.523 | 2 × 2.363, 2.365 | 2123.8 | −29.5 | |
CO, CO (2) | 1158.92 | 5.9 | 1.137, 1.137 | 2.605, 2.595 | 2.344, 2.348, 2.358, 2.350, 2.353, 2.355 | 2193.4, 2189.5 | 40.1, 36.2 | |
CO, OC (1) | 1158.75 | 3.9 | 1.138, 1.145 | 2.610, 2.705* | 2.370, 2.391, 2.394 | 2191.8, 2124.0 | 38.5, −29.3 | |
2CO (1)c | 1158.83 | 4.8 | 1.138, 1.138 | 2.625, 2.761* | 2.383, 2.408, 2.417 | 2185.1, 2175.4 | 31.8, 22.1 | |
PBEsol-D2 | — | 1144.90 | — | — | — | 3 × 2.356 | — | — |
COe | 1159.92 | 10.8 | 1.137 | 2.578 | 2.324, 2.345, 2.348 | 2196.2 | 42.9 | |
COe | 1159.92 | 10.8 | 1.137 | 2.615 | 2 × 2.336, 2.338 | 2191.1 | 37.8 | |
OC | 1159.80 | 8.1 | 1.144 | 2.514 | 2.351, 2.352, 2.356 | 2127.9 | −25.4 | |
2CO (1) | 1174.84 | 9.6 | 1.139, 1.138 | 2.664, 2.687 | 2.391, 2.401, 2.405 | 2185.9, 2181.8 | 32.6, 28.5 | |
2OC (1) | 1174.63 | 7.2 | 1.144, 1.144 | 2.553, 2.562 | 2.391, 2 × 2.392 | 2133.6, 2130.6 | −19.7, −16.7 | |
CO, OC (1) | 1174.74 | 8.6 | 1.138, 1.144 | 2.655, 2.584 | 2.380, 2.401, 2.403 | 2187.0, 2131.7 | 33.7, −21.6 | |
PBEsol-D3(BJ) | — | 1141.12 | — | — | — | 3 × 2.343 | — | — |
CO | 1156.03 | 8.2 | 1.137 | 2.620 | 2.366, 2.364, 2.350 | 2190.3 | 37.8 | |
OC | 1155.92 | 5.8 | 1.145 | 2.537* | 2.360, 2.360, 2.367 | 2124.6 | −27.9 | |
CO, CO (2) | 1170.93 | 8.2 | 1.137, 1.138 | 2.638, 2.637 | 2.356, 2.353, 2.352, 2.364, 2.352, 2.356 | 2190.9, 2186.4 | 38.4, 33.9 | |
CO, OC (1)b | 1170.80 | 6.6 | 1.138, 1.144 | 2.691, 2.861* | 2.393, 2.392, 2.380 | 2187.4, 2128.2 | 34.9, −24.3 | |
2CO (1) | 1170.87 | 7.5 | 1.138, 1.139 | 2.714, 2.909 | 2.391, 2.410, 2.405 | 2180.3, 2173.9 | 27.8, 21.4 | |
2OC (1) | 1170.68 | 5.4 | 1.145, 1.144 | 2.835*, 2.757* | 2.392, 2.390, 2.385 | 2133.6, 2127.0 | −18.9, −25.5 | |
OptB86d | — | 1056.95 | — | — | 3 × 2.343 | — | — | |
CO | 1069.97 | 8.1 | 1.138 | 2.607 | 2.348, 2.350, 2.351 | 2178.7 | 49.2 | |
OC | 1069.93 | 7.0 | 1.146 | 2.502 | 2 × 2.362, 2.364 | 2111.3 | −18.2 | |
CO, CO (2) | 1083.06 | 8.7 | 1.138, 1.138 | 2.604, 2.608 | 2.343, 2.348, 2.360, 2.350, 2.353, 2.354 | 2180.7, 2175.8 | 51.2, 46.3 | |
CO, OC (1) | 1082.96 | 7.5 | 1.139, 1.146 | 2.640, 2.951* | 2.362, 2.381, 2.386 | 2174.3, 2109.3 | 44.8, −20.5 | |
CO, OC (1)d | 1083.00 | 8.0 | 1.139, 1.146 | 2.668, 2.628* | 2.369, 2.387, 2.388 | 2173.8, 2113.1 | 44.3, −16.7 | |
CO, OC (2) | 1082.99 | 7.8 | 1.138, 1.145 | 2.493*, 2.602 | 2.356, 2.358, 2.359, 2.344, 2.346, 2.348 | 2181.3, 2115.0 | 51.8, −14.5 | |
2CO (1) | 1083.03 | 8.4 | 1.139, 1.140 | 2.646, 2.984 | 2.364, 2.404, 2.407 | 2171.7, 2160.4 | 42.2, 30.9 |
![]() | ||
Fig. 3 Calculated total energy (kcal mol−1) per CO of each considered NaY model including the various configurations of CO species at the PBE (circles), PBEsol (triangles up), PBEsol-D2 (triangles down), PBEsol-D3BJ (stars), and optB86d (diamonds) levels and experimental heats of adsorption (upper and lower boundaries given via dotted-dashed lines10,11). Different cases correspond to adsorption of one CO (cases 3 and 5) or two CO (cases 1, 2, and 4) molecules at one NaII site (cases 1, 3, and 4), one NaIII site (case 5) or two NaII sites (case 2) coordinated via the Na–CO orientation (cases 2 and 4) or Na–CO plus Na–OC orientations (case 1). |
The local NaII cationic geometry was then analyzed upon CO adsorption (Table 2). Three coinciding NaII–Oz distances of 2.360 Å (Table 2) were obtained at the PBE/PAW level in the 6R window, which are in good agreement with XRD Na–Oz lengths, i.e., 2.337 Å in NaY16,17 or NaNAT,47i.e., as from 2.371 and 2.394 Å towards the Ow atoms of the nearest water molecules to 2.367, 2.395, 2.518, and 2.615 Å towards the zeolite Oz atoms of NaNAT.47 The NaII coordination varies between usually lower coordinated NaIII′ cations in the 4R window (with NaIII′–Oz of 2.441, 2.464, 2.519, 2.776 Å) and NaII in the similar FAU cage, i.e., |NaII–Oz| = 2.311, 2.316, and 2.356 Å at the PBE level. We remind that the NaY model with NaIII′ was used herein as proposed in ref. 18–20 (more details in Section S1 of the ESI†). The NaII–Oz value of 2.360 Å at the PBE level slightly shortens to 2.336 and 2.343 Å with PBEsol and optB86d, respectively, also in reasonable agreement with the experimental data.16,47
The Na–Oz distances elongate due to CO adsorbed at NaII (Table 2) in a less emphasized manner than those measured upon adsorption of 16 or 32 CF3CFH2 molecules,16,17i.e., from 2.337 Å (no physisorbed molecules) to 2.478 Å (16 molecules per unit cell or 2 molecules per NaY supercage) and 2.510 Å (32 molecules per unit cell).16,17 Other NaII–Oz elongations were computed in the course of carbonate formation in the NaX zeolite.48 For comparison, the elongations of the shortest NaII–Oz bonds due to one or two carbonate (or hydrocarbonate) species are given in Fig. 3 of ref. 48. One or two carbonates (or hydrocarbonates) per two NaX supercages are indeed closely connected to the NaII cation/cations, the average elongations being 0.07 and 0.08 Å for one or two carbonates (or hydrocarbonates), respectively, within the most stable configurations and 0.19 and 0.16 Å within the least stable configurations.48 These last calculated values are of the same order of value as the ones measured in NaY in the course of CF3CFH2 adsorption, 0.141 Å (16 molecules or 2 molecules per supercage) and 0.173 Å (32 molecules) from Table 4 of ref. 16.
Parameter | PBE | PBEsol-D3(BJ) | OptB86d | Experiment |
---|---|---|---|---|
a At one NaIII site. b CO rotation along the diffusion trajectory, and it is bonded with NaII with the C atom in the beginning and in the end of migration. c Motion towards the already occupied NaII site. d Migration from the NaII to NaIII site. e Diffusion between NaII sites in neighbor supercages without CO rotation (see the animation file in the ESI). f CO rotation along diffusion between NaII sites in neighbor supercages maintaining the NaII–CO orientation. g For the NaX zeolite.3 h PBEsol. i PBEsol-D2. | ||||
ΔU | 2.0, 0.7a | 2.1,h 1.3,a,h 2.7,i 1.8 | 1.1, 0.02a | 0.610–12 |
E #rot | 5.4 | 5.3 | — | — |
−iωrot | 107.4 | 96.6 | — | — |
E #dif | 4.1, 5.3,b 5.5,c 0.7,d 4.5,e 4.9f | 4.7, 6.0,b 1.0,d 4.0,e 4.6f | — | 4.1g![]() |
−iωdif | 19.1, 71.8,b 98.5,c 35.2,d 72.6,e 109.9f | 73.7, 71.5,b 45.4,d 77.7,e 80.5f | — | — |
Q st | 5.9 | 6.7,h 11.3i | 8.7 | (5.5–6.1) ± 0.5,10–12 5.0,28 5.6g |
Δω | 66.8 | 65.7, 68.8,h 63.2–68.3i | 67.4 | 53,14 4915 |
Before discussing dicarbonyls, one has to consider the important example of monocarbonyls over NaII which is typical with all DFT methods used herein (Fig. 2d). Two CO molecules corresponding to different monocarbonyls with nearly the same energies of −1156.92 eV (C1–O1) and −1156.92 eV (C2–O2) at the PBEsol-D2 level (cases (e) in Table 2) were obtained, as shown in Fig. 2d. The C2–O2 molecule deviates by around 20° from the C1–O1 axis orientation which is perpendicular towards the 6R plane, i.e., Oz–Na–C2 = 70.28° versus Oz–Na–C1 = 90.25°. However, it does not lead to a valuable energy variation (0.02 kcal mol−1). The C1–O1 → C2–O2 motion between two nearly iso-energetic positions is also accompanied by a Na–C shortening (0.037 Å) and a weak Na migration to a less symmetric position relative to the Oz atoms of the 6R window. Comparing the Na–Oz distances at the PBEsol-D2 level with those calculated at the other levels (Table 2), one can guess that the CO position in monocarbonyls corresponds to the C1–O1 type (CO is nearly perpendicular to the 6R plane) with optB86d and to the C2–O2 type (tilt geometry) with PBE and PBEsol. In dicarbonyls, the C1–Na–C2 angle is generally around 70°, i.e., 72.66, 72.44, and 71.83° at the PBE, PBEsol, and optB86d levels, respectively. Hence each CO in dicarbonyls is far from the Na and is outside the abovementioned iso-energetic zone with a steric angle, formed by the C2–O2 deviation from the C1–O1 axis, around 40°. So, the different CO locations within this steric angle are characterized by the same energy (and slightly different BSs as shown below). An energy advantage of the C1–O1 or C2–O2 geometry can come from different C1–O1 and C2–O2 zero point energies (ZPEs). Our estimation at the PBEsol-D2 level leads to a minor value of −0.03 kcal mol−1 (10 cm−1) with a higher ZPE for the C1–O1 type. This ZPE estimate corresponds to 9 degrees of freedom for the Na–CO complex versus the other fixed zeolite atoms.
The addition of a second CO molecule at a neighbor NaII site as NaII–CO in the FAU cavity (case 2 in Fig. 3) leads to different energy changes per CO with the different DFT methods, i.e., it slightly decreases with PBE and PBEsol but increases with optB86d. The adsorption of a second CO molecule at the same NaII site as Na–CO (case 4 in Fig. 3) or Na–OC (case 1 in Fig. 3) orientations decreases the energy per CO (in absolute values) in the same manner with both PBE and PBEsol. The average energy per CO changes very little with CO adsorption at the optB86d level, which thus clearly underestimates the role of CO–CO interactions. According to Egerton and Stone, the isosteric heat of CO/NaY adsorption is nearly constant at small coverage, i.e., from 5 × 10−8 to 10−7 m3 g−1.10 The CO/NaX case is characterized by a quick decrease of the heat of adsorption with coverage,49 while optB86d demonstrates a rather opposite trend. Based on the narrow interval of the CO coverage and the nearly constant heat of adsorption behavior known for CO/NaY,10 it is difficult to finally conclude which heat dependence (increase, decrease, or minor dependence) on the CO coverage is closer to the reality. Let us add that the possible modifications of cationic sites at higher CO coverage and the appearance of NaIII sites also complicate the question.
Both PBE and optB86d lead to higher adsorption energies per CO when the NaIII site is occupied (case 5 in Fig. 3). If the less stable NaIII centers with higher adsorption energy are occupied at higher CO coverage, they will moderate the decrease of the adsorption heat with coverage or they will even change the trend to the opposite. The problem is then to determine the coverage at which high CO concentration leads to the migration of CO from NaI′ to NaIII′ sites, but the problem is outside the current study as we focus on small coverage only. We thus compared the adsorption energy gain in the Henry domain (or close to it) at all three PBE, PBEsol, and optB86d levels due to the increase of the single CO interaction with the NaIII cation (6.0, 5.0, and 9.9 kcal mol−1) versus the NaII cation (5.4, 6.2, and 8.1 kcal mol−1) as their differences 0. 7, −1.1,§ and 1.8 kcal mol−1, respectively. The values have to be compared to the destabilization of the NaY zeolite, i.e., the price to move one cation from the NaII to the NaIII site, 7.6, 6.1, and 5.8 kcal mol−1 at the PBE, PBEsol, and optB86d levels, values that cannot be compensated by the higher adsorption energies at the NaIII site instead of NaII, i.e., 0. 7, −1.1, and 1.8 kcal mol−1 at the PBE, PBEsol, and optB86d levels. So, the formation of NaIII¶ cations in NaY cannot be justified thermodynamically if one uses one CO molecule per NaIII. If one would manually construct a NaY model with NaIII cations coming from the NaI positions where they are more tightly connected by three shortest NaI–O distances of 2.251, 2.228, and 2.238 Å instead of the shortest 2.360, 2.336, and 2.343 Å for NaII–O at the PBE, PBEsol, and optB86d levels (Table 2), then the destabilization would be even larger. In relation to this, here we mention that additional restrictions on the formation of NaIII cations can be obtained from spectroscopic interpretations.
The NaII–OC and NaII–CO distance values illustrate the deviations between mono- and dicarbonyl species. When monocarbonyls are observed in the framework, the NaII–CO distance is generally shorter than NaII–OC. When dicarbonyls are formed, it is often the opposite.|| In our opinion, this comes from the non-equivalent CO positions which cannot be achieved at the NaII site of nearly C3 symmetry, maintaining minimal CO–CO repulsion. As a result, one of the CO molecules, which can be either O-connected, or C-connected, is closer to the 4R windows near NaII. The shift to the 4R oxygens suggests possible multiple minima near the zeolite walls mainly due to dispersion energy. The distances from CO to the 4R Oz are summarized in Table S3 (ESI†). For example, we would like to pinpoint the CO–NaII–OC case (whose optB86d energy is −1082.96 eV in Table 2) with the remote OC location (2.951 Å). At the same optB86d level, one CO is also remote from NaII by as much as 2.984 Å (the “2CO” case whose energy is −1083.03 eV in Table 2). For CO–NaII–OC, we modified the initially optimized position for the O-connected CO and obtained a more stable symmetric geometry (whose optB86d energy is −1083.00 eV), leading to an energy gain of 1.0 kcal mol−1. The |O–Na| = 2.668 Å and |O–Na| = 2.628 Å distances were then shifted to the conventional ratio when |C–Na| > |O–Na| as for single adsorbed CO species (Table 2). The corrected more symmetric geometries, however, do not lead to drastic changes for the ωHF and ωLF frequencies as shown in Section 3.3. The displacement towards the 4R window is less emphasized at the PBE level with underestimated dispersion energy, although differences of CO orientations in adsorbed mono- and dicarbonyl species are evident (Table 2). Such a situation was already shown earlier for larger cations like in RbY only using a pair-wise addition scheme,50 but the various examples in the current work confirm the role of the NaY cell geometry to explain the differences in CO orientations in mono- and dicarbonyl species. The inequality of the positions of the two CO molecules in the CO–NaII–OC dicarbonyls is one of the reasons for the different CO frequencies without essential coupling between the vibrational CO–CO modes as will be discussed in the next part.
Type | PBE | PBEsol | PBEsol-D2 | PBEsol-D3(BJ) | OptB86d | B3LYPc | Pair-wised | Exper. |
---|---|---|---|---|---|---|---|---|
a PBE1 periodic model (48T) of NaY with the NaII–CO–NaIII location (Table 2 of ref. 20). b PBE2 periodic model (48T) of NaY with the NaII–CO–NaIII location (Table 2 of ref. 20). c Cluster model (42T) of NaY with the 6-311++G(d,p) (Na–CO–Na)/6-31G(d)(Al, Si, Oz, Na′) basis set, with Na′ being all cations except the two Na in close contact with CO; the case CO and OC correspond to NaII–CO–NaIII and NaII–OC–NaIII, respectively.20 d Pair-wise addition scheme.50 e This overestimated absolute value comes from the problem of the approximated repulsive constant for the CO–Oz orientation which has no minimum.50 | ||||||||
ΔωHF | 44.1 | 39.3 | 42.9, 37.8 | 37.8 | 49.2 | 30.0 | 30.0 | 32,51 2815 |
ΔωLF | −22.7, −7,a −20b | −29.5 | −25.4 | −27.9 | −18.2 | −19.0 | −40.5e | −2115 |
Δω | 66.8 | 68.8 | 68.3, 63.2 | 65.7 | 67.4 | 49.0 | 70.5 | 53,14 4915 |
One important issue for our computations is the discussion of the dicarbonyl models of two CO–NaII–CO and OC–NaII–CO types. We show below that the ωHF splitting between mono- and dicarbonyls in NaY is large enough to explain the experimental difference relative to the fine structure of the ωHF band in NaZSM-5. In NaY, the symmetric shoulders at 2183 cm−1 (red shifted +12 cm−1 relative to the main band at 2171 cm−1) and 2156 cm−1 (blue shifted −15 cm−1) are present within a wide temperature range,15 while no such shoulders have been observed in NaZSM-5.15
First, the non-equivalence of CO modes in mono- and dicarbonyl species is not a consequence of vibrational CO–CO coupling in dicarbonyls. A simple verification of their negligible impact can be done when the calculation of the frequencies is performed upon fixed coordinates of the neighbor CO of the same dicarbonyl species. For example, for the OC–NaII–CO dicarbonyl, the alternate freezing of the second CO leads to Δω values of 2172.8 and 2163.1 cm−1 (from two separate frequency computations) instead of 2172.8 and 2163.8 cm−1 (from one single computation with mobile atoms of both CO molecules) at the PBE level (case “2CO (1)” in Table 2). The unique case of interacting CO–CO molecules was obtained in the CO–NaII–OC dicarbonyl at the PBEsol-D2 level.** The respective Cartesian components of the vibrational vectors possess similar orders of values for both C and O atoms for both CO molecules, i.e., x(C1) = −0.638, y(C1) = −0.269, z(C1) = 0.016, and x(C2) = −0.162, y(C2) = 0.249, z(C2) = 0.006. One should, however, emphasize that the existence of CO–NaII–OC dicarbonyl remains in question.
Second, only the PBE/PAW type of calculation allows an interpretation of the red shifted 2183 cm−1 branch15 due to the ΔωHF increase in CO–NaII–CO dicarbonyl complexes up to 56.8 cm−1 (ωHF = 2192.3 cm−1 in Table 2). The blue shifted peak (relative to 2179.6 cm−1 for monocarbonyls in Table 2) originates from OC–NaII–CO, i.e., ΔωHF = 37.3 cm−1 (or ωHF = 2172.8 cm−1 in Table 2). The ωHF splitting between two CO molecules at two neighbor NaII sites (case “CO, CO (2)”) is smaller, varying between 2.3 cm−1 (PBE) and 4.9 cm−1 (optB86d) that might also be resolved experimentally (Table 2). The dicarbonyls are less energetically favored with all three DFT functionals (Table 2), thus explaining their lower intensities compared to the main peak. The adsorption energy differences for CO–NaII–CO and OC–NaII–CO are rather close, i.e., 2.1 kcal mol−1 (5.4–3.3 = 2.1 kcal mol−1 from Table 2) and 1.4 kcal mol−1 (5.4–4.0 = 1.4 kcal mol−1 from Table 2), respectively, relative to the NaII–CO adsorption energy (5.4 kcal mol−1) at the PBE level. Therefore, these branches will vary nearly simultaneously with the experimental conditions (pressure or temperature). The asymmetry of the main ωHF peak at any temperature in NaY, i.e., shoulder or shoulders on the blue shifted side, does not contradict the calculated results because all DFT functionals confirm the additional blue shifted peaks relative to the main CO transition in NaII–CO. Concerning NaZSM-5, we unfortunately could not perform the necessary PBC computations using VASP due to its large cell dimensions. As a result, we can only suggest that the dicarbonyl complexes in NaZSM-5 can either be much less stable than in NaY, or present identical locations of both CO molecules, very close to the positions of the monocarbonyl due to the symmetry of the Na sites so that the branches nearly coincide and cannot be observed.
Possibilities to change the CO orientation from NaII–CO to Na′II–OC along the reaction coordinate (Fig. 1) or to maintain the NaII–CO orientation were therefore studied. Without CO rotation, the NaII–CO orientation steeply transforms to Na′II–OC, resulting in the lowest TSs (4.1 and 4.7 kcal mol−1 at the PBE and PBEsol-D3(BJ) levels, respectively, in Table 3). The second route (with rotation) requires conserving the most energetically favorable NaII–CO geometry after the migration. It is conditioned by the possibility of CO rotation along the reaction coordinate (Fig. 1) and thus depends on the rotation–translation interaction. Owing to the migration from the initial NaII site, the CO molecule moves far from the cation and hence will be influenced by a weaker electric field. It might decrease the CO rotational barrier along the NaII–Na′II trajectory. Then the molecule might rotate to maintain the energetically favored Na′II–CO orientation after the jump. However, the barrier for the rotation–translation is similar to the barrier of rotation (5.3 instead of 5.4 kcal mol−1 at the PBE level in Table 3), a larger value versus the diffusion barrier. This does not demonstrate a decrease of the electric field gradient value along the trajectory between two NaII cations. It shows that the diffusion jump should be accompanied by a CO re-orientation†† (from NaII–CO to Na′II–OC), avoiding CO rotation (Fig. 4).
The small energy difference per CO for either one or two CO molecules at one single site leads to a natural question, namely, can one CO molecule move to an already occupied NaII site? The PBE activation energy of such migration, 5.5 kcal mol−1, is slightly larger versus the activation energy of pure rotation, 5.4 kcal mol−1, and hence it should also be less feasible compared to CO diffusion to a free NaII site with an activation energy of 4.1 kcal mol−1. The appearance of NaIII′ leads to a much smaller barrier of 0.7 and 1.0 kcal mol−1 at the PBE and PBEsol-D3(BJ) levels, respectively, for the CO migration from NaII to NaIII (Table 3 and Fig. 4). Formally, considerably small barriers allow all possible site configurations producing very complex IR spectra in contrast to the experimental ones. We can thus consider neither NaIII nor NaIII′ cations formed upon CO stimulation as part of a reliable NaY model.
In order to obtain a complete picture of the CO diffusion we also considered the inter-cage diffusion barrier. Passing the 12R window between two NaII sites belonging to neighbor supercages leads to a minimal barrier of 4.5 kcal mol−1 (PBE) when the NaII–CO orientation at the starting point is changed to the NaII–OC orientation at the end point of the trajectory (an animation file of this migration is supplied in the ESI†). The TS geometry corresponds to a CO position in the 12R plane with the C atom separated by close NaII–C distances from both NaII atoms (5.128 and 5.975 Å). Hence, the barriers increase along the series: intra-cage (4.1 kcal mol−1) < inter-cage (4.5 kcal mol−1) < rotation plus translation in intra-cage (5.3 kcal mol−1) < rotation (5.4 kcal mol−1) at the PBE level.
There are two possibilities to occupy the NaIII or NaIII′ site: either to shift the cation from the most stable NaI or NaII site to the NaIII or NaIII′ site (as in ref. 20 and herein), or to find a coverage for which the CO molecules start to stimulate a NaI′ transport without any loss of total stability of the system (which could be considered at the level of Gibbs potential or limited by enthalpy). An appropriate model should lead to stabilization of the system after NaI′ to NaIII diffusion and CO adsorption (or vice versa, CO adsorption and then Na diffusion) and not to the destabilization by 7.6, 6.1, and 5.8 kcal mol−1 at the PBE, PBEsol, and optB86d levels, respectively, as with the model herein without CO adsorption (see column 4 in Table S2 of the ESI†). The orders of the destabilization energy values are close to the decrease of the activation barrier of electric conductivity from NaY (17.7 kcal mol−1) to NaX (12.5 kcal mol−1) in dehydrated states.53 The conductivity is provided by Na jumps between allowed positions. The decrease of the energy barrier by 5.2 kcal mol−1 in NaX is the direct consequence of the presence of the less strongly coordinated NaIII cation in NaX. A compensation of the energy loss by a gain of CO specific adsorption energy (Section 3.2) is not sufficient in alkali forms. One should note that we occupied the NaIII site starting from the NaII cation of the same supercage (just by moving the NaII to the NaIII site and optimizing the fractional coordinates and cell parameters). It led to smaller destabilization of the zeolite as compared to the NaI′ to NaIII′ drift because NaI′ is coordinated more strongly to the framework than NaII is.
The second way, i.e., NaI′ transport at higher CO coverage, requires totally different models. The main problem to apply this scheme with a NaI′ shift is the unknown coverage at which CO starts to stimulate the transport of NaI′ to the NaIII′ sites. We did not consider this case as such a problem is outside the current study wherein we restrict ourselves to a domain of small NaY coverage.
Moreover, CO is an adsorbate molecule with a relatively weak electrostatic interaction which cannot stimulate any ionic transport of alkali and earth alkaline cations.‡‡ The heats of CO interaction with the Na cations (5.5–6.0 kcal mol−110–12 in NaX or even smaller 5.0 kcal mol−1 in NaY28) are smaller than those of C2F4H2 (16.5 kcal mol−1
16,17) or CFCl3 (around 8 kcal mol−1 for similar CF2Cl218) molecules and hence the time-of-life of the respective Na–CO complex to migrate (Na and CO together) has to be shorter. Within a conventional range of adsorbates from He or H2 (no transport) to water (there is a cationic drift54–56), CO is closer to the He or H2 case.
An important part of our work is the demonstration of larger ωHF values in dicarbonyls relative to the ones for monocarbonyls, i.e., a ΔωHF value of 56.8 cm−1 for CO–NaII–CO compared to 44.1 cm−1 for NaII–CO at the PBE level (Table 2).§§ The coincidence of CO bands in mono- and dicarbonyls is usually admitted using cluster models. With the cluster approach, the estimation of CO perturbation in either OC–NaII–CO or CO–NaII–CO is hindered. We would like to emphasize that the ΔωHF variation is mainly the result of another CO position in dicarbonyls relative to within monocarbonyls and not the result of a CO–CO coupling (see Section 3.3). Formally, at the NaII site with approximate C3 symmetry, one cannot find two identical symmetric positions for two CO molecules,¶¶ imposing, morever, the condition of their optimal interaction (at least, minimal CO–CO repulsion, see non-equivalent positions of CO in the upper view of Fig. 2b). An additional difference in the non-equivalence of CO positions in dicarbonyls (not discussed in this work) can come from the various Al distributions in the 6R windows around each NaII site.57 The different CO positions for OC–NaII–CO (Fig. 2b) lead to different ΔωHF values irrespective of the strength of CO–CO coupling. As shown in Table 2, the ωHF value of CO in dicarbonyls can exceed the respective ωHF in monocarbonyls. As an explanation, it was mentioned that the minor contribution of the μE dipole-field term to the heat of CO adsorption results from the small CO dipole12 (see also all the energy components in Fig. 4 of ref. 58). Hence, a maximum electric field value at the optimal CO location cannot be a necessary requirement neither in mono- nor in dicarbonyls. The electric field E can vary in any direction (decrease or increase) while going from mono- to dicarbonyls. As the main part of the CO BS (μ(v = 1) − μ(v = 0)) × E depends mainly on the CO dipole change μ(v = 1) − μ(v = 0) upon vibrational transition 0 → 1 and electric field E (Table 4 of ref. 50), a simultaneous increase of ωHF is not forbidden due to a higher electric field in dicarbonyls.
The simple electrostatic picture of CO adsorption on alkali cationic sites allows some semi-quantitative estimation. Using results of previous empirical calculations,50,58 one can qualitatively evaluate the possible rotational barrier for adsorbed CO. An accurate electrostatic model for the NaCaA zeolite showed that the CO quadrupole-field gradient is the main contribution to the barrier of CO rotation along the line connecting Ca and the center of the α-cage of NaCaA.58 Regarding the higher Ca charge (q(Ca) = 1.2 e for model A of the NaCaA zeolite, see Table 4 of ref. 58) versus the one of Na in NaY (our estimation of Bader charge according to ref. 59 is q(Na) = 0.87 e), the estimations for NaCaA can serve as upper boundaries for the CO location in NaY. The quadrupole-field gradient energy can be crudely evaluated to be 2.6 kcal mol−1 at the minimum of the total CO adsorption energy (R ∼ 5.4 a.u. in Fig. 4 of ref. 58). The barrier of a CO rotation by 90° relative to the axis between the center of mass of CO and the Ca cation corresponds to the double value considering the opposite sign of the “quadrupole-field gradient” contribution after rotation. It is the consequence of the negative sign of the CO quadrupole moment. Hence, the barrier is around 5.2 kcal mol−1. The smaller contribution comes for the change in inductive (or polarization) energy ΔUind ∼ ½ × αE2 upon CO rotation, with α being the CO polarizability and E, the electric field, i.e., 0.6 kcal mol−1 from Fig. 4 of ref. 58. The Uind variation after a CO rotation by 90° can be obtained by re-scaling the ratio of the parallel (15.63 a.u. (ref. 30)) to perpendicular (11.97 a.u. (ref. 30)) polarizabilities which are the most important relative to the E field at both orientations 0.63 × (11.97/15.63) = 0.5 kcal mol−1. This value is smaller than Uind calculated by Dempsey for Ar/NaY (0.9 kcal mol−160) while the polarizability of Ar, i.e., 11.04 a.u.,3 is smaller than that of CO.61 In total, one gets 5.2 + 0.5 = 5.7 kcal mol−1. The smaller rotational barriers of 5.4 and 5.3 kcal mol−1, calculated at the PBE and PBEsol-D3(BJ) levels, respectively (Table 3), show a qualitative coherence with the simple estimation above. The other electrostatic components (dipole-field etc.) of the energy terms are much smaller (see Fig. 4 of ref. 58). Despite the simple empirical scheme of pair-wise potentials, Fig. 4 from ref. 58 shows a dominant role of the dispersion energy in the cationic zeolite A form. At the PBE0-D level, it was recently demonstrated for all siliceous zeolites that dispersion contributions vary between 70.1 and 94.3% of the total energies.62
Footnotes |
† Electronic supplementary information (ESI) available: Detailed discussion of the NaY model containing NaIII cations (Section S1), Table S1 with calculated CO molecular parameters, Table S2 being an analogue of Table 2 for the tentative NaY model containing NaIII cations with additional geometric characterization of adsorbed CO over NaIII (Table S3), and an animation avi-file of CO diffusion between NaII sites in neighbor supercages without CO rotation (case “e” in Table 3). See DOI: 10.1039/c7cp03043f |
‡ See footnote in Section 3.2. |
§ The negative value with PBEsol-D shows that CO interacts more strongly with NaII than with NaIII; therefore, no gain comes from the adsorption energy at the PBEsol level. |
¶ The same estimation is valid for NaIII′ according to ref. 20. |
|| It is also important to address the question of the higher kinetic diameter of CO versus CO2.1 The same PBE/PAW level of theory gives for |Na–OCO| = 2.300–2.316 Å (Table S9 of SEM in ref. 25) that is slightly shorter than |Na–OC| = 2.542 Å herein (Table 2). But together with two |C–O| bond lengths of 1.178 Å in CO2, the sum of the distances results in a higher CO2 diameter. |
** In the case of the other DFT methods, the extent of coupling is weaker, i.e., at the PBE level only one component of the second CO presents comparable values, i.e., y(C2) = −0.13, y(O2) = −0.10, while the other x- and z-components of the C2 and O2 atoms are much smaller. |
†† We use the word “re-orientation” instead of more frequent “isomerization” because it does not possess a chemical “flavor” which has no place in the current case. |
‡‡ Transition metal cations, whose chemical bonding with CO leads to stable carbonyl species, are not included in the discussion. |
§§ Slightly larger Δω values are also obtained for two CO molecules adsorbed at two different NaII cations at the PBE, PBEsol-D2, and optB86d levels. This also confirms the possible Δω increases relative to the one for isolated monocarbonyls, even if the difference is smaller than for CO–NaII–CO using PBE. |
¶¶ Two nearly symmetric positions for two CO molecules could be found for the OC–NaIII–CO case due to the local C2 symmetry, but we do not discuss the NaIII case as explained above. The symmetric OC–NaIII–CO location cannot be a favored one. |
This journal is © the Owner Societies 2017 |