Maciej
Wojtaś
*a,
Anna
Gągor
b and
Andrei L.
Kholkin
cd
aFaculty of Chemistry, University of Wrocław, 14 Joliot-Curie, 50-383 Wrocław, Poland. E-mail: maciej.wojtas@chem.uni.wroc.pl
bW. Trzebiatowski Institute of Low Temperature and Structure Research Polish Academy of Science, PO Box 1410, 50-950 Wrocław, Poland
cDepartment of Physics and CICECO Ű Materials Institute of Aveiro, 3810-193 Aveiro, Portugal
dInstitute of Natural Sciences, Ural Federal University, 620000 Ekaterinburg, Russia
First published on 19th July 2016
New amino acid based [H-β-(2-pyridyl)-Ala-OH][ClO4] and [H-β-(2-pyridyl)-Ala-OH][BF4] crystals were synthesized and their structure and functional piezoelectric properties were investigated in detail. The former crystallizes in the piezoelectric P212121 space group whereas the latter belongs to the polar P1 space group. Piezoelectric force microscopy (PFM) measurements revealed that the piezoelectric coefficient, d15eff, of the [H-β-(2-pyridyl)-Ala-OH][BF4] crystal is more than twice that in the widely used transducer material lithium niobate, LiNbO3. The crystal structures of both [H-β-(2-pyridyl)-Ala-OH] derivatives are characterized by inter- and intramolecular hydrogen bond networks that are responsible for a high piezoresponse. The existence of intramolecular hydrogen bonding was confirmed by means of IR measurements. The thermogravimetric (TGA) technique was applied to study the thermal behavior of the title crystals. The piezoelectric properties are discussed in the context of the crystallographic structure and the microstructure of these crystals.
It appears that highly organized molecular dipole assemblies frequently exhibit piezoelectricity due to the presence of polar bonds and natural asymmetry, which is characteristic of many organic biomaterials (proteins, peptides, amino acids and polysaccharides). Furthermore some biomolecules with bias-induced conformational states also possess true ferroelectric properties.6 One of the most interesting materials for nanoelectronic applications is the alanine derivative, L-phenylalanyl-L-phenylalanine. This material easily self-assembles into tube-like structures.7 This process that takes place in this dipeptide as well as in L-leucyl-L-leucine, L-leucyl-L-phenylalanine and L-phenylalanyl-L-leucine was studied in detail by Görbitz8–10 and by Gazit's group.7,11–14 Later on, Kholkin et al.15 demonstrated that peptide nanotubes (PNTs) are strongly piezoelectric with the orientation of polarization along the tube axis. Recent success in the growth of mm-sized microtubes has allowed study of not only quasistatic piezoelectric properties but also resonance phenomena.16
Currently, it seems to be appropriate to widen the current research into organic–inorganic materials, such as amino acid and simple inorganic acid (HClO4, HBF4, etc.) derivatives. Synthesis of such a class of compounds allows us to create an almost unlimited number of new salts with potentially high piezoelectric properties.17 Moreover, due to the presence of the chiral carbon atom of amino acids (the only exception is glycine) such a material exhibits nonlinear optical (NLO) properties.18–20 The study of single crystals will allow us to correlate their structure, microstructure and functional piezoelectric properties.
Thermogravimetric analyses (TGA) and differential thermal analyses (DTA) were performed on a Setaram SETSYS 16/18 instrument in a nitrogen atmosphere in the temperature range 298–900 K and at a 5 deg min−1 heating rate for both samples. [2PyAla][BF4] sample mass: 16.721 mg; [2PyAla][ClO4] sample mass: 9.1395 mg.
The PFM measurements were performed using a commercial AFM (Ntegra Prima, NT-MDT) equipped with an external function generator and a lock-in amplifier (see ref. 22 for more details). We used doped Si cantilevers with spring constants in the range of 0.35–6.1 N m−1 driven by an AC voltage of 5 V peak-to-peak at a frequency of 100 kHz.
Optical microscope observations were carried out by means of a Zeiss Axioplan 2 optical microscope equipped with a Zeiss AxioCam ICc.
Crystal data, data collection and structure refinement details are summarized in Table 1. Experiments were carried out at 298 K with Mo Kα radiation using an Xcalibur, Sapphire1, long nozzle diffractometer. Data were collected in ω-scan mode with Δω = 1.0° using the CrysAlisCCD programme.23 CrysAlisPRO was used for data processing.24 Empirical absorption correction was performed using spherical harmonics, implemented in CrysAlisPRO. The structure was solved by direct methods and refined by the full-matrix least-squares method against F2 by means of SHELXL2014/7.25 H atoms were treated by a mixture of independent and constrained refinement. The donor H atoms from NH3 as well as NH groups have been refined with constraints because of their proximity to librating perchlorate and BF4− ions. Rigid body constraints were applied to disordered BF4−. Additional data collection was performed at 100 K for [2PyAla][BF4] to validate the structure solution at room temperature that was performed in the presence of a vast thermal disorder of BF4. The results are presented in an additional cif file attached as the ESI.† The low temperature refinement confirmed the correct solution of the room temperature structure. The latter was used for the discussion and comparison of the crystallographic details of [2PyAla][ClO4] and [2PyAla][BF4] measured under the same conditions. CCDC 1422211, 1447382 and 1447383 contain the crystal information data file for the structure of [2PyAla][ClO4], [2PyAla][BF4] (RT) and [2PyAla][BF4] (100 K), respectively.
[2PyAla][ClO4] | [2PyAla][BF4] | |
---|---|---|
Crystal data | ||
Chemical formula | C8H11ClN2O6 | C8H11BF4N2O2 |
M r | 266.64 | 254.00 |
Crystal system, space group | Orthorhombic, P212121 | Triclinic, P1 |
a, b, c (Å) | 5.3294(2), 10.3097(5), 19.222(1) | 5.0586(2), 9.4971(4), 11.2012(5) |
α, β, γ (°) | 90, 90, 90 | 87.637(4), 80.166(3), 89.255(3) |
V (Å3) | 1056.13(8) | 529.76(4) |
Z | 4 | 2 |
F(000) | 548 | 260 |
μ (mm−1) | 0.38 | 0.16 |
Colour | Colourless | Colourless |
Crystal size (mm) | 0.3 × 0.15 × 0.09 | 0.25 × 0.21 × 0.15 |
Data collection | ||
T min, Tmax | 0.779, 1.000 | 0.989, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3851, 2004, 1674 | 5209, 3441, 3003 |
R int | 0.02 | 0.018 |
q values (°) | q max = 25.7, qmin = 2.9 | q max = 25.7, qmin = 2.8 |
(sin![]() |
0.61 | 0.61 |
Completeness to qmax (%) | 99.8 | 99.4 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.083, 0.85 | 0.050, 0.121, 1.01 |
No. of reflections | 2004 | 3441 |
No. of parameters | 158 | 391 |
No. of restraints | 0 | 175 |
Dρ max, Dρmin (e Å−3) | 0.25, −0.25 | 0.29, −0.22 |
Absolute structure | Flack × determined using 578 quotients [(I+) − (I−)]/[(I+) + (I−)]21 | Refined as an inversion twin. |
Absolute structural parameter | −0.02(3) | The crystal is a weak anomalous scatterer |
There are two protonation sites in the counterion: the amine group and the nitrogen from the pyridine ring. The first site is verified by the distance between the α-carbon and the amine nitrogen atom C(2)–N(1) of 1.481(4) Å that is characteristic of a single bond and indicates that the amine group is protonated. The latter one is validated through the C(5)–N(2)–C(4) angle of 122.6° in the pyridine ring that points to protonation of the ring nitrogen N(2). Additionally, the C–O bonds of the carboxylate group are double with lengths less than 1.252(4) Å that support the appropriate location of protonation centers. The carboxyl group is bent towards the pyridinium ring (the C(3)–C(2)–C(1)–O(6) dihedral angle is equal to −59.7(1)°). This conformation promotes the formation of an intramolecular hydrogen bond N(2)–H⋯O(6) with a donor to acceptor distance of 2.623(4) Å and a donor to acceptor angle equal to 167(3)°.
The supramolecular assembly is controlled by numerous hydrogen bonds between the amine hydrogen atoms, CH2, CH groups and ClO4− anions. N–H⋯O, O–H⋯O and C–H⋯O intermolecular interactions are crucial in building supramolecular architectures in organic–inorganic hybrids as well as metal–organic materials.26–28 Oxygen from perchlorate ions acts as an acceptor in 7 different hydrogen bonds. Table 2 summarizes the hydrogen bond parameters whereas Fig. 2(a) and (b) illustrates the crystal packing and hydrogen bonds in the crystal structure of [2PyAla][ClO4]. The strongest hydrogen bonds are formed between the protonated 3-(2-pyridyl)alanines. They involve an amine hydrogen atom and an oxygen atom from the carboxylic group. The N1–H⋯O5 bonds connect neighboring cations in the a direction forming infinite chains built of the C(5) motif,29 see Fig. 2(b). Strong hydrogen bonds are also found between the protonated 3-(2-pyridyl)alanine and perchlorate oxygen atoms. They form spiral chains which propagate along the a direction and may be described by the C12(6) synthon. There are two N1–H⋯O4 and N1–H⋯O2 bonds within the motif, formed between the NH3 group of protonated 3-(2-pyridyl)alanine and two perchlorate anions. The weak C–H⋯O contacts with donor to acceptor distances ranging from 3.211(5) to 3.444(5) Å also stabilize the supramolecular structure although the bonding strength of sp2 and sp1 carbons is weaker (see ref. 30 and references therein).
D–H⋯A | D–H (Å) | H⋯A (Å) | D⋯A (Å) | D–H⋯A (°) |
---|---|---|---|---|
Symmetry codes: (i) x + 1/2, −y + 1/2, −z + 2; (ii) x + 1, y, z; (iii) x, y − 1, z; (iv) x + 1, y − 1, z; (v) −x + 2, y − 1/2, −z + 3/2. (vi) x + 1, y, z; (vii) x − 1, y, z; (viii) x, y − 1, z; (ix) x − 1, y − 1, z. | ||||
[2PyAla][ClO4] | ||||
N1–H1A⋯O4i | 0.89 | 2.04 | 2.926(4) | 170.4 |
N1–H1B⋯O5ii | 0.89 | 1.89 | 2.771(4) | 171.5 |
N1–H1C⋯O2 | 0.89 | 2.1 | 2.965(4) | 162.9 |
N2–H9⋯O6 | 0.91(4) | 1.73(4) | 2.623(4) | 167(3) |
C3–H3A⋯O3ii | 0.97 | 2.49 | 3.444(5) | 166.8 |
C3–H3B⋯O3 | 0.97 | 2.59 | 3.500(5) | 156.4 |
C6–H6⋯O2iii | 0.93 | 2.54 | 3.264(5) | 135.2 |
C6–H6⋯O4iv | 0.93 | 2.59 | 3.211(5) | 124.4 |
C8–H8⋯O1v | 0.93 | 2.53 | 3.347(5) | 147.4 |
[2PyAla][BF4] | ||||
N28–H28⋯O12 | 0.86 | 1.81 | 2.636 (6) | 159.3 |
N27–H27⋯F3 | 0.86 | 2.01 | 2.747 (14) | 142.8 |
N27–H27⋯F3′ | 0.86 | 1.99 | 2.829 (9) | 163.2 |
N15–H15A⋯F6vi | 0.89 | 2.28 | 2.967 (9) | 134.2 |
N15–H15A⋯F7 | 0.89 | 2.31 | 2.934 (10) | 127.1 |
N15–H15A⋯F6′vi | 0.89 | 2.42 | 3.063 (14) | 129.2 |
N15–H15A⋯F7′ | 0.89 | 2.12 | 2.849 (17) | 138.8 |
N15–H15B⋯O12 | 0.89 | 1.88 | 2.762 (5) | 172.2 |
N15–H15C⋯O17vii | 0.89 | 1.97 | 2.816 (5) | 157.1 |
N14–H14A⋯F4viii | 0.89 | 2.29 | 2.856 (16) | 121 |
N14–H14A⋯F1′ix | 0.89 | 2.27 | 2.790 (11) | 117 |
N14–H14A⋯F2′viii | 0.89 | 2.27 | 3.081 (10) | 150.5 |
N14–H14B⋯O17ix | 0.89 | 1.87 | 2.743 (5) | 167.7 |
N14–H14C⋯O16viii | 0.89 | 2.04 | 2.826 (5) | 146.8 |
The conformation of A and B counterions is different. In A, similar to [2PyAla][ClO4] the carboxylate group is bent towards the pyridinium ring and an intramolecular N(28)–H⋯O(12) hydrogen bond is formed with a ring nitrogen serving as a donor and oxygen from the carboxylate group as an acceptor. The donor to acceptor distance equals 2.636(6) Å, and the donor to acceptor angle equals 159°. In B the side chain is more straightened and the carboxylate group is directed towards amine NH3 from neighboring A counterions forming strong intramolecular hydrogen bonds with amine hydrogens, see Fig. 2(c) and Table 2. In [2PyAla][BF4] the strongest hydrogen bonds are formed between the 3-(2-pyridyl)alanines, between amine hydrogen atoms and oxygen from carboxylate groups. The donor to acceptor distances range from 2.743(5) to 2.826(5) Å and the angles range from 147 to 172°. They form 2D layers expanding in the a and b directions. Among them, along with the intramolecular bond and N(15)–H⋯O(12) bonds the ring motifs may be recognized with two donor and two acceptor atoms (R22(9)). The supramolecular structure is also stabilized, especially in the c direction, by numerous N–H⋯F interactions (see Fig. 2(d)), which are listed in Table 2. Due to the pronounced vibration motions of BF4− groups these hydrogen bonds are less stable.
V(r,R) = a2(R)r2 + a3(R)r3 + a4(R)r4, |
Table 3 presents the band frequencies and their assignments. The assignments reported in ref. 34–36 were used as guides.
BF4 | ClO4 | Assignments |
---|---|---|
Wavenumbers [cm−1] | Wavenumbers [cm−1] | |
n – bands of nujol oil; f – bands observed in fluorolube oil. vs – very strong; s – strong; m – medium; w – weak; vw – very weak; and sh – shoulder. | ||
3268m,3265sf | ||
3194vw,3195mf | 3184m,3169mf | Asym. NH2 stretch. |
3138wf | 3116vw,3113wf | Aym. NH2 stretch. |
3082w,3082wf | 3095wf,3307vw,3068wf | Asym. NH3 stretch., C–H aromatic |
2990vwf | 3019vwf | |
2953n,2926n,2923wf | 2968n,2941wf,2936n | |
2869shn,2853wf,2822wf | 2925vwf,2901,2849wf | |
2854n,2723w | 2878,2822wf,2861n | |
2722vw,2693vw,2680wf | ||
2626w,2614wf | 2617vw | NH stretch. in NH3 |
2538vw,sh,2538wf,2470w | 2538vw,sh,2535wf,2448wf | |
2467wf | 2445w | |
2347vwf | Stretch. CNH bend. | |
2051m,2049wf | 2145vwf,2057wf,2056vw | |
1995wf,1870vw,1869vwf | 1997vw,1995wf,1866vwf | |
1743vwf | 1744wf,1725w | |
1655sh,1654shf | NH2 bend. | |
1631s,1630vsf,1603m | 1626s,1626vsf,1610vsf | C![]() |
1602sf | ||
1575wf,1574w | ||
1540s,1539vsf | 1548mf,1541w | NH3 puckering |
1501s,1498vsf | C![]() ![]() |
|
1472mf,1465sn,1446wf | 1474mf,1466sn,1454mf | CH2 bend. |
1420m,1419sf,1403m | 1437wf,1404m,1401sf | |
1402sf | ||
1377mn | 1377mn | CH3 bend. |
1365mf,1364w,1355w | 1364m,1361mf | NH3 puckering |
1354mf,1335mf | 1345w,1343mf | |
1310s | 1313s | CN stretch. |
1290m,1194w,1194w | 1299m,1248w,1239w | |
1177m | ||
1150w | 1150w | NH bend. |
1121sh | ||
1065vs | 1110vs,1094vs,1082vs | H3–N1–C2–C3 bend. |
1047s,sh | ||
1013w | 1004vw | Asym NC2 stretch. |
898w,851s | 853m | Sym. NC2 stretch. |
780s | 776s | NH2 rocking |
767sn | 760mn | CCH bend. |
736w,722w | 736w,720w | HNC bend. |
659m | 653m | OCOH + NH2 bend. |
630s,608w,596m | 625s,605m,592w | |
540vs | 540w | OH bend. |
522s,496m,479m | 513m,480w |
Fig. 5(e) shows the image of the [2PyAla][ClO4] sample recorded by means of an optical microscope. The majority of the microcrystals are needle shaped, elongated along a. The cross section of the crystals is rectangular and two other crystallographic directions, b and c, are normal to surfaces parallel to a – see Fig. S1 in the ESI.†Fig. 5(f) presents a selected microcrystal and its piezoresponse (part (g)) recorded in the plane (IP, the bottom part of the image) and OOP (the upper part of the image). The difference is striking, and one may observe only a residual OOP signal. Its magnitude is non-zero which seems to be caused by the concretion of the crystals with different orientation of molecules. The diagram below presents the piezoelectric coefficient matrix for point group 222 according to Nye.40
In order to prove the piezoelectric character and estimate the magnitude of this effect the piezoresponse vs. AC electric field measurements were carried out. However, due to the inhomogeneous E-field distribution42 the PFM gives only the effective piezoresponse. Thus the results of the [2PyAla][BF4] and [2PyAla][ClO4] piezoresponse were compared to those of a commercially available LiNbO3 (LNO) sample (periodically poled lithium niobate, cut normal to the polar axis, NT-MDT). In this way it is possible to quantify the piezoeffect in various materials avoiding rigorous calculations.43Fig. 6 shows the out-of-plane and in-plane piezoresponse signals of [2PyAla][BF4] and the in-plane signal of [2PyAla][ClO4] crystals in comparison with the LNO out-of-plane signal (d33 = 17 pm V−1 – see Wong44). In the case of the titled crystals the estimated piezoelectric coefficients were labelled ‘eff’ since the piezoresponse of perchlorate and tetrafluoroborate derivatives is a function of shear ([2PyAla][ClO4]) and the shear and extension ([2PyAla][BF4]) components, respectively. It is also the reason that the most striking feature is the fact that the piezoresponse of the IP signal of [2PyAla][BF4] is twice as high as that of the LNO sample. It should be noted that the recorded piezoresponse is very stable and both titled crystals can be driven under a high excitation level since neither nonlinearity nor irreversibility even at an AC voltage of 20 V was observed. The OOP response of perchlorate crystals was insignificant and was not presented in the graph.
![]() | ||
Fig. 7 The spiral chain created by the protonated H-β-(2-pyridyl)alanine and perchlorate oxygen ions. |
The question as to why two compounds of very similar composition crystallize in two different crystallographic systems and therefore different space groups remains open. The crystal structure of salts of amino acid and their properties depend on many factors, such as: the charge state and conformation of the cation, the structure, composition and dynamical state of the anion as well as the hydrogen bond system.48 In the case of the title crystals one may suggest that the key feature is the disorder of the anions – in the [2PyAla][BF4] the anions are disordered down to 100 K, whereas the [ClO4]− anions exhibit different dynamic states and the disorder is much less significant. It must however be remembered that this model is a bit speculative since [2PyAla][BF4] and [2PyAla][ClO4] are the first derivatives of [H-β-(2-pyridyl)-Ala-OH] with inorganic acids. In the case of L-arginine and L-histidine, Petrosyan49 points out 9 different formation mechanisms on the basis of structural analysis of more than 80 salts of these amino acids. Among the salts of L-arginine there are compounds which crystallize either in the orthorhombic system (space group P212121) like e.g. (L-ArgH)ClO450 or in the monoclinic system (P21) like e.g. (L-ArgH2)(NO3)251 or triclinic (P1) like e.g. (L-ArgH2)(ClO4)2.17 Another factor affecting the symmetry of the title crystals might be the strength of the acid and its influence on the charge state of the amino acid. Perchloric acid is considered as one of the strongest acids with a pKa of the order of −8 whereas tetrafluoroboric acid's pKa is −4.9 (see ref. 52) thus both acids are very strong. The hypothesis that HClO4 fixes the structure stronger and the piezoresponse is lower than in the HBF4 derivative is also speculative. Most probably the hydrogen bond network is crucial but the strict correlation between the hydrogen bonds and the structure remains unknown – see for example Görbitz8 or Surekha et al.20 It is worth noting that introduction to the building compounds of heterocyclic rings makes the hydrogen bond network stabilizing the building units more extensive. This, in turn, may produce polar properties and lead to the emergence of ferroelectricity53 in those amino acid derivatives. It should be added that there are some recent applications based on piezoelectricity where H-bonding plays a significant role, see for instance Garain et al.,54 Jana et al.,55 Alam and Mandal56 or Tamang et al.57
It seems to be very promising to substitute the tetrafluoroboric or perchlorate anions either completely or partly by other inorganic anions. The number of such exchange possibilities is almost unlimited and some of them, with a high degree of possibility, may lead to crystals with desired properties – both piezoelectric and suitable for biomedical applications. The latter may be realized by using the material as a media for biologically active molecules. In this account it is not attempted to predict the suitable structures which satisfy these demands; however, it appears to be advisable to widen the scope of research into other amino acid–inorganic acid hybrid compositions.
Footnote |
† Electronic supplementary information (ESI) available. CCDC 1422211, 1447382 and 1447383. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c6tc02206e |
This journal is © The Royal Society of Chemistry 2016 |