Łukasz
Czekański
a,
Stanisław K.
Hoffmann
*b,
Piotr
Barczyński
a,
Anna
Gąsowska
a,
Romualda
Bregier-Jarzębowska
a,
Alina
Zalewska
a,
Janina
Goslar
b,
Małgorzata
Ratajczak-Sitarz
a and
Andrzej
Katrusiak
a
aFaculty of Chemistry, Adam Mickiewicz University in Poznań, Umultowska 89b, 61-614 Poznań, Poland
bInstitute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznań, Poland. E-mail: skh@ifmpan.poznan.pl
First published on 10th November 2016
A new Cu(II) carboxylate coordinating compound [1-methyl-3-carboxymethyl benzimidazolium betaine]2CuBr2 was synthesized and crystallized. The crystal has the triclinic symmetry P, with unit cell dimensions a = 7.9693, b = 8.4129, c = 9.1302 Å, α = 68.058, β = 85.402 and γ = 71.258 deg. (Z = 1), and molecules stacked along the a-axis. Cu(II)-complexes are planar and four-coordinated with chromophore CuO2Br2, where two oxygen atoms belong to the carboxylate groups of two betaines acting as unidentate ligands. The compound was characterized by two-dimensional 1H and 13C NMR spectroscopy for the determination of the correlation between protons of a ligand molecule. NMR spectra confirm the coordination of Cu(II) ions and allow identification of H(2) proton as easily detached in basic conditions. FT-IR spectra confirm the unidentate coordination of the betaine carboxylate group. UV-Vis spectra show three bands in d–d-transition region. Energies of these transitions were used in the interpretation of the EPR results. From powder and single crystal EPR measurements the g-factors were determined as gx = 2.072, gy = 2.030, gz = 2.241. A non-typical g-factor sequence is a consequence of the orbital mixing in the ground state of Cu(II) complex of D2h symmetry. The g-factors were interpreted in terms of the Molecular Orbital (MO) theory which delivered the Cu(II) unpaired electron density delocalization onto the ligand molecules. A strong delocalization on betaine molecules via in-plane ground-state orbital was found and unexpectedly also via out-of plane orbital directed towards the non-coordinating oxygen of the betaine carboxylate group.
A great importance is a conformational flexibility, which is responsible for syn and anti conformation of the ligand leading to divergent and convergent products with suitable metal ions.1,18–20 Working-sheets about benzimidazole derivatives containing carboxylate groups coordinated to the different metals have been recently published.9–14 Scientists are trying to investigate the relationship, biological activity and connections of heterocyclic complexes with Cu(II) with biological molecules such as peptides or DNA.21–29 Liu and coworkers investigated the structure and DNA-condensing properties of tris(benzimidazolyl)amine–Cu(II) coordination units bridged by carboxylates, which can act as a new type of gene-delivery systems.21
The betaine derivative forms a large molecule with coordinating properties related to COO-group. Free betaine appears in a zwitterionic form Me3N+CH2COO−. Betaines are involved in the methylation reaction of biomolecules and are used by cells for the protection against osmotic stress. Metal–betaine interactions have been intensively studied in a series of coordination polymers where betaine molecules act as bridging units in dimeric and chain structures.30–32 In most cases the betaine acts as a bidentate ligand although discrete molecules with betaine as unidentate ligand are known as well.33 A characteristic feature of betaine is a larger O–C–O bond angle compared with common carboxylates resulting in better solubility.33 Cu(II) ions are easily coordinated by betaine carboxylate group and halide anions Cl− or Br−. In binuclear Cu(II) complexes with bridging betaines the Cl and Br are located in apical positions.33,34 In monomeric Cu(betaine)2Cl2 two chlorine atoms and two unidentate betaine form compressed tetrahedral CuCl2O2 units,33 whereas when water molecule is involved, the square–pyramidal complexes are formed with two unidentate betaine and Cl or Br in a basal plane and a water molecule in an apical position.30
In this paper we report the synthesis and crystallization of a new coordination compound of Cu(II)Br2 and N-alkylcarboxybenzimidazole as a ligand with monodentate carboxylate group of a betaine unit. Perfectly planar CuO2Br2 complexes were found in a crystal structure.
A triclinic crystal structure was determined by X-ray diffraction and correlated to the infrared vibrations. Measurements of powder and single crystal electron paramagnetic resonance (EPR) spectral parameters and their analysis by Molecular Orbital theory gave detailed electronic structure of the Cu(II) complex with delocalization parameters of unpaired electron density via the d-orbitals.
The synthesis of the compounds (1–3) is presented in Scheme 1.
FT-IR spectra were taken on a Bruker IFS 66 v/S. Samples of solid compounds were prepared as suspensions in Nujol and Fluorolube, and KBr film. The spectra were recorded in the range of mid-infrared 4000–400 cm−1 with resolution 2 cm−1. Each FT-IR spectrum was measured by acquisition of 64 scans.
UV-Vis spectra were taken on a UV/Vis Thermo Fisher Scientific Evolution 300 Spectrophotometer. The samples were prepared in H2O for the same ligand and metal concentration as in samples for potentiometric titrations using a Plastibrand PMMA cell with 1 cm path length.
1H and 13C NMR was performed on a Varian 400 MHz and 2D 1H and 13C NMR was performed on a Bruker Avance 600 MHz. The 2D 1H–1H (COSY), 1H–13C (HETCOR) and HMBC (Heteronuclear Multiple-Bond Connectivity) spectra were obtained with the standard Bruker software.
The Cu(MBImAcO)2Br2 crystals selected for single-crystal X-ray diffraction measurements were grown from water as green parallelepipeds. They were stable under normal conditions and the X-ray diffraction measurements were carried out on a Eos X-Calibur diffractometer using MoKα radiation at room temperature: ω-scan data collection with Δω = 1° frames and 40 s exposures was applied. Data reduction was performed with the CrysAlisPro and CrysAlisRed programs.37 The absorption of crystal was corrected analytically. The max. and min. transmissions were 0.6205 and 0.3033, respectively. The structure was solved by direct methods using SHELXS-97 and refined with full-matrix least-squares on reflections intensities (F2) with SHELXL-97.38 All H-atoms were located from the molecular geometry (C–H 0.93–0.97 Å) and their Uiso's were assigned equal to 1.2Ueq of their carriers, and Uiso = 1.5Ueq for the methyl group.
Powder and single crystal EPR spectra were recorded at room temperature and at 77 K using Radiopan SE/X-2547 spectrometer working at X-band with 100 kHz modulation. The spectra were simulated using Bruker SimFonia routine. Angular dependence of the single crystal EPR line was measured in three planes of an orthogonal reference frame 1, 2, 3 related to the crystal plate. Axis 1 is parallel to the [001] direction being the elongation direction of the crystal plane, and axis 3 is perpendicular to the largest crystal face(1).
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Scheme 3 Numbering of atoms in ligand molecule and chemical shift for 1H (upper number) and 13C (lower number). |
1H and 13C NMR spectra of benzimidazolium betaine ligand (3) and the complex (4) (which was made by mixing betaine (3) with CuBr2, in the ration 100:
1), were made in D2O and are compared in Fig. 2 and 3. In 13C NMR spectrum of complex (4), carboxylate carbon atom C(12) appears as an extended, small peak, which demonstrates the coordination of the copper atom through an oxygen atom bonded directly to a carboxylate carbon atom. Moreover, the peak from carbon atom C(11) almost disappears. At high magnification, it appears to be an expanded signal. It also suggests that there is a coordination of copper atom through carboxylate group which is directly attached to the carbon C(11). All signals of carbons C(4)–C(9) in the benzene ring are distinguishable, because of unsymmetrical substitution of imidazole ring.
The position C(2) has acidic properties, making it easy to detach the H(2) proton at basic conditions. Due to the fact that 13C NMR spectrum of the betaine (3) was made in D2O, there is an exchange of a proton H(2) by deuterium atom, which gives three signals in the spectrum. These signals are the result of coupling of the carbon atom C(2) with deuterium atom, while in the 13C NMR spectrum of the complex (4), there are four signals: singlet and triplet. The singlet derived from coupling of C(2) with proton H(2) – incompletely deuterated C(2) position of the ligand. The triplet signal is the result of the coupling of carbon atom C(2) with deuterium atom from the solvent. A comparison of the 13C chemical shifts of benzimidazolium betaine (3) and complex (4) shows that only the shifts of C(11) and C(12)OO of betaine are affected by copper(II) coordination through the carboxylate group. The chemical shifts are: from 174.76 ppm to 173.94 ppm for C(12)OO and from 52.24 ppm to 54.76 ppm for C(11).
1H NMR spectrum of betaine ligand (3) (Fig. 3) was made in D2O. Therefore, there has been almost full exchange of proton H(2) into the deuterium atom. After enlarging, traces of proton H(2) are visible. Whereas in the spectrum of the complex (4) we can observe a signal from H(2), which has not been completely exchanged for deuterium atom. From the curve of integration, we can conclude that about 20% of H(2) has been exchanged. Comparing the signal positions of the ligand and Cu-complex we cannot see any significant differences.
Empirical formula | C20H20N4O4Br2Cu |
Formula weight | 603.76 |
Temperature (K) | 293(2) |
Wavelength | 0.71073 Å |
Crystal system, space group | Triclinic, P![]() |
Unit cell dimensions | a = 7.9693(5) Å |
b = 8.4129(5) Å | |
c = 9.1302(5) Å | |
α = 68.058(5) | |
β = 85.402(5) | |
γ = 71.258(6) | |
Volume | 537.13(5) Å3 |
Z | 1 |
Calculated density | 1.867 g cm−3 |
Absorption coefficient | 4.772 mm−1 |
F(000) | 299 |
Crystal size | 0.25 × 0.20 × 0.10 mm |
θ range for data collection | 2.41–29.12° |
Limiting indices | −9 ≤ h ≤ 10, −11 ≤ k ≤ 8, −12 ≤ l ≤ 12 |
Reflections collected/unique | 4820/2515 Rint = 0.0212 |
Completeness to θ = 29.12 | 87.4% |
Refinement method | Full-matrix least-squares on F2 |
Data/restraints/parameters | 2515/0/142 |
Goodness-of-fit on F2 | 1.008 |
Final R indices [I > 2σ(I)] | R 1 = 0.0290, wR2 = 0.0681 |
R indices (all data) | R 1 = 0.0398, wR2 = 0.0722 |
Largest diff. peak and hole | 0.405 and −0.513 e Å−3 |
The complex (4) is formed by the Cu(II) cation coordinated by two Br anions and two zwitterionic MBImAcO molecules. Each MBImAcO molecule forms a unidentate type of coordination bond through its carboxylate oxygen O(2) to the Cu(II) cation (Fig. 4).
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Fig. 4 Perspective ORTEP drawing of complex Cu(MBImAcO)2Br2 with atom numbering. The thermal ellipsoids are shown at 50% level. |
The Cu(II) cation is located at the inversion centre. Consequently, the benzimidazole rings of the ligands are mutually parallel as required by the crystal symmetry as it is visible in autostereographic projection of Fig. 5.41 Thus, also the all carboxylate groups in the crystal are mutually parallel. The carboxylate group is twisted by 77.5(2)° from the plane of the benzimidazole ring. There is one [Cu(MBImAcO)2Br2] complex molecule per the unit cell and half of the complex is symmetry independent. The molecules form chains along the crystal a-axis with stacked benzimidazole rings.
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Fig. 5 Autostereographic projection41 of the molecular packing in crystal structure of Cu(MBImAcO)2Br2 viewed along [001]. The shortest H···Br contacts are indicated by the dashed lines. |
CuO2Br2-complex is planar with Cu(1)–O(2) distance equal to 1.9293 Å and Cu(1)–Br(1) bond 2.4125 Å. The second oxygen atom of the betaine is at longer distance Cu(1)–O(1) = 2.9492 Å and does not disturb the square-planar geometry of CuO2Br2-complex. The perfect planarity of CuO2Br2-complex is an effect of a weak coupling of Br-atom to the lattice allowing the electrostatic forces to form the linear Br–Cu–Br bond. However, a planar structure is not an intrinsic property of four coordinated Cu-complexes with identical ligand atoms. A free CuX4 tetrahedron has distorted geometry being a result of a balance between crystal field stabilization favoring square-planar geometry and Br–Br electrostatic repulsion favoring tetrahedral geometry. This balance is reached for Br–Cu–Br angle of about 120°. Hydrogen bonds tend to remove the charge from bromine atoms reducing electrostatic repulsion and thus enhancing a tendency to square-planar coordination. Crystal packing effect resulting from alignment of large organic molecules and hydrogen bonds can dominate the intrinsic effect leading to the planar geometry even for CuX4 complexes.
Two of the shortest intermolecular contacts with respect to the van der Waals radii have the forms of a weak CH···Br hydrogen bonds: Br(1)···H(112)–C(11) (symmetry code: 1 − x, 2 − y, 2 − z) and Br(1)···H(111)–C(11) (symmetry code: x, y − 1, z). Their H···Br distances of 2.720 and 2.988 Å are by 0.31 and 0.04 Å, respectively, shorter than the sum of the van der Waals radii of H and Br (1.2 and 1.83 Å according to ref. 42). The next shortest contacts between the complex aggregates are all longer than the sums of van der Waals radii. The bond lengths and bond angles are presented in Tables S2 and S3 of the ESI.†
Broad band with resolved peaks at 3466 cm−1 and 3396 cm−1 in ligand spectrum can be assigned as stretching vibrations of OH-groups indicating the existence of a single water molecule attached to the betaine ligand. This band does not exist in the Cu(II) complex (4) confirming that the final green crystal does not contain water molecules. The antisymmetric O–C–O stretching mode 1616 cm−1 for ligand (3) is shifted to 1626 cm−1 indicating the coordination of Cu(II) ion by the carboxylate group. The coordination with the bromine atom is not detectable in the presented spectrum. Cu–Br antisymmetric and symmetric stretching vibrations are expected in 240–250 cm−1 and 200–210 cm−1 region, respectively,43 which are out of range of our measured spectrum.
A coordination type can be established by a comparison of the symmetric (νs-COO) and antisymmetric (νas-COO) stretching modes frequencies. It is known that the frequency difference Δ = νas − νs between these modes is in the following order: Δ(unidentate) > Δ(ionic) ∼ Δ(bridge) > Δ(bidentate).44–46 If the difference Δ is lower than the 203 cm−1 (observed value for sodium acrylate), then we are dealing with the type of bidentate coordination. In contrast, when this value is greater than 203 cm−1, this shows unidentate coordination. Frequencies νs(COO) and νas(COO) of the symmetric and antisymmetric O–C–O stretching modes of the coordinated formate ion in (4) are assigned at 1375 and 1626 cm−1, respectively. Value Δ = 251 cm−1 suggests a unidentate coordination mode between Cu ion and carboxylate group of a betaine ligand.
The spectrum at UV-region can be decomposed on four bands located at 253 nm, 277 nm, 339 nm and 397 nm resulting from intramolecular transitions.
EPR spectrum was recorded for powder samples and for single crystals. Powder spectrum recorded at room temperature and at liquid nitrogen temperature is presented in Fig. 8. The spectral parameters obtained from computer simulations of the powder spectra (dashed lines) are collected in Table 2. This is a typical spectrum described by non-axial g-tensor. The shift of the low-field line, corresponding to the g-factor along the main complex symmetry axis (z-axis) and line broadening on cooling are non-typical behavior due to exchange and dipolar coupling competition.
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Fig. 8 Powder EPR spectrum of Cu(II) in Cu(MBImAcO)2Br2 recorded at room and liquid nitrogen temperature at frequency 9.380 GHz. Dashed lines are the simulated spectra with parameters collected in Table 2. |
From powder spectrum simulations (with Lorentzian lineshape) | |||
---|---|---|---|
Room temperature 295 K | Liquid nitrogen temperature 77 K | ||
The direction cosines of the normal to the CuO2Br2 coordination plane are: (0.6422, −0.5901, −0.4892). | |||
g x = 2.072 | ΔBpp(x) = 0.06 mT | g x = 2.072 | ΔBpp(x) = 1.5 mT |
g y = 2.030 | ΔBpp(y) = 0.09 mT | g y = 2.030 | ΔBpp(y) = 1.5 mT |
g z = 2.240 | ΔBpp(z) = 1.0 0 mT | g z = 2.234 | ΔBpp(z) = 1.5 mT |
More precise information on the g-tensor and its orientation in the crystal one can obtain from the analysis of angular dependence of the resonance line position. Such measurements were performed by crystal rotation around three orthogonal axis of the reference frame related to the largest crystal plane(1) as it is shown in the inset of Fig. 9. The g2-tensor components were calculated (see Table 2) and the tensor diagonalization gave the principal value and principal axes direction cosines (see Table 2). Principal values are in good agreement with the powder data. Principal g2-tensor directions show that the main symmetry axis of the CuO2Br2 complex (normal to the coordination plane) well coincides with local crystal z-axis (compare the results in Table 2) from EPR measurements. The Br−-ligand is a source of relatively weak crystal field (only I− ion gives weaker) as shown by its localization in the spectrochemical series, and its contribution to crystal field at Cu(II) site is smaller than that from oxygen atom. Thus, the g-factor along O–Cu–O direction is expected to be the lowest giving gx-value, whereas along Br–Cu–Br (y-axis) the medium value g-factor appears. Orbital mixing, discussed below, produces reversing the gx and gy values. The local crystal field axes x, y, z lie close to the planes of the reference frame as marked in Fig. 9 and the complex localization with local axes is shown in Fig. 10.
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Fig. 9 Angular dependence of the resonance field in three planes of 1, 2, 3 orthogonal frame (see inset). Solid lines are theoretical plots with principal g-tensor values and direction cosines given in Table 2. The z-axis and x-axis (close to the Cu–Br bonds) marked in the figure do not lie in the 12 and 23 planes but are close to the indicated directions (see corresponding principal direction cosines in Table 2). |
The minimal g-factor is lower than 2.04. It cannot result from the d-orbital splitting but it is an effect of the orbital mixing in the orbital ground state. Local geometrical and crystal field symmetry of the CuO2Br2 complex is D2h. In this relatively low symmetry the orbitals having the same symmetry can be mixed. In D2h the orbitals |x2 − y2〉 and |z2〉 have Ag-symmetry and are mixed in the ground state leading to the anti-bonding molecular orbitals
Ψ(Ag) = α(adx2−y2 + bdz2) − α′L1 |
Ψ(Ag′) = α1(adz2 − bdx2−y2) − α1′L2 |
Ψ(B1g) = βdxy − β′L3 |
Ψ(B2g) = γ1dxz − γ11L4 |
Ψ(B3g) = γ2dyz − γ2′L5 | (1) |
For the Ag ground state symmetry the principal g-tensor components are:48
![]() | (2) |
The first, but mostly not obvious consequence of the mixing, hidden in eqn (2), is reversing the g-factors sequence with gx > gy. This appears even for a very small mixing effect.48
From the analysis of eqn (1) using orbital energies from UV-Vis spectrum one can calculate molecular orbitals coefficients a, α, β, γ1 and γ2. These coefficients characterize electronic structure of the studied paramagnetic center, i.e. a degree of unpaired electron spin density localization onto central ion and delocalization via coordination bands. The coefficients cannot be exactly calculated from the three eqn (2) and the normalization condition. Thus, we propose approximate approach for the coefficient evaluation, with sufficiently good accuracy, taking into account that squared MO-coefficient cannot be lower than 0.5 (unpaired electron cannot be strongly delocalized onto ligands).
Mixing coefficient a can be evaluated from gy value plotting α2vs. a using eqn (2). Since α2 > 0.5 thus from the plot a = 0.964–0.988. It is a relatively small orbital mixing in the ground state. From the equations for gx and gy the γ-values can be evaluated by plotting the ratio γ1/γ2vs. a from the equation
![]() | (3) |
Footnote |
† Electronic supplementary information (ESI) available: Atomic coordinates and equivalent isotropic displacement parameters (Table S1), bond lengths and angles (Table S2), torsional angles (Table S3), FT-IR absorption maxima (Table S4). CCDC 1480526. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c6nj03192g |
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