Open Access Article
Christina
Wegeberg
a,
Christian Grundahl
Frankær
b and
Christine J.
McKenzie
*a
aDepartment of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark. E-mail: mckenzie@sdu.dk; Fax: (+45) 6615 8760; Tel: +45 6550 2518
bDepartment of Chemistry, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark
First published on 20th October 2016
The iodine L3-edge X-ray Absorption Near Edge Structure (XANES) of organic and inorganic iodine compounds with formal iodine oxidation states ranging from −1 to +7 shows edge energies spanning from 4560.8 eV to 4572.5 eV. These were used to calibrate the oxidation state of iodine in a unique iron complex of iodosylbenzene (PhIO), [Fe(tpena)OIPh]2+ (tpena− = N,N,N′-tris(2-pyridylmethyl)ethylenediamine-N′-acetate), which was found to be +1.6. Thus the iodine oxidation state is reduced by 1.4 compared with that in precursor uncoordinated PhIO. On the basis of a combination of X-ray diffraction and Extended X-ray Absorption Fine Structure (EXAFS) spectroscopy, we have determined the unknown crystal structure of PhIO, along with a new phase of iodylbenzene (β-PhIO2) using the Rietveld method. Analogous 1-D chains of halogen bonded [⋯O–I⋯O–I] motifs are the dominant supramolecular interactions between PhIO and PhIO2 monomers in each structure respectively and the polymeric structures rationalise the general insolubility of these oxygen atom transfer reagents. A double stack of phenyl units in PhIO is found between the layers of the halogen bonded O/I chains. In the case of PhIO, C–H⋯π interactions between adjacent phenyl groups result in the alternate phenyl groups lying in parallel planes. Supplementing the strong polymerizing halogen bonds, this supramolecular interaction must exacerbate the insolubility of PhIO. The pillared structure of the new rhombohedral β-PhIO2 differs significantly from the known monoclinic lamellar phase, α-PhIO2, described 36 years ago in which the chains form lamellar stacks [N. W. Alcock and J. F. Sawyer, J. Chem. Soc., Dalton Trans., 1980, 115–120].
The strong halogen bonding has presumably enabled the solid state trapping of this novel species. In the context of elucidation of the mechanism of the catalysis of sulfoxidation and epoxidation by [Fe(tpena)]2+, the question is now whether the direct O-transfer agent in the catalytic cycle is the [Fe(tpena)OIPh]2+ adduct (in its dimeric or monomeric form), or a hypervalent iron(IV) or iron(V) derivative (Fig. 1b). Consideration of how metal ion coordination affects the electronic structure of the PhIO ligand, and the iron atom, respectively, will furnish information towards answering this question. To determine how much inner sphere charge transfer has occurred during PhIO coordination, it is therefore obvious to compare the I–O bond length in free vs. coordinated PhIO: a tendency towards increasing oxidation state of the iron with concomitant decrease in the oxidation state of the iodine, should be reflected by an increased FeO–IPh distance in the complex vs. its counterpart in “free” PhIO. A relatively short Fe–OIPh distance would also be pertinent. Unfortunately a direct comparison of the I–O bond lengths in free vs. coordinated PhIO is not possible, since, despite the fact that this compound has been known for more than a century,4 its crystal structure is as yet unknown. Several representations of PhIO can be found in the literature: from monomeric, with a double I
O bond and trigonal, linear or L-shaped geometry around the I atom (Fig. 2a), to polymeric due to strong secondary O–I bonds (aka halogen bonding). A structural model with two O–I distances of 2.04 Å and 2.377 Å and an I–O–I angle of 114° was determined on the basis of iodine K-edge EXAFS spectroscopy (Fig. 2b).5 A C–I–O angle was determined to be close to 90° by Mössbauer spectroscopy.6 The shortest of the I–O distances is 0.12 Å longer than that in [Fe(tpena)OIPh]2+, seemingly incongruent with the notion that this bond should be moving in the direction of homo- or heterolytic cleavage in the iron complex. Solid state interactions will naturally attenuate these distances and these are at best, poorly described in the case of PhIO. For [Fe(tpena)OIPh]2+, the interaction of the iodine atom with four oxygen atoms is well defined by structural analysis by single crystal X-ray diffraction (SCXRD).2
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| Fig. 2 (a) Various representations of the molecular PhIO found in the literature. (b) Intra- and intermolecular I–O distances in solid state PhIO proposed on the basis of EXAFS.5 | ||
In an attempt to analyze the charge distribution in [Fe(tpena)OIPh](ClO4)2, we describe here the determination of the oxidation states of the iodine atoms in [Fe(tpena)OIPh](ClO4)2 and precursor PhIO using iodine L3-edge X-ray Absorption Near Edge Structure (XANES) spectroscopy. We have used the most extensive analysis of iodine reference compounds, spanning the −1 to +7 oxidation state range, performed to date. In addition the crystal structures of PhIO and a new phase of PhIO2, hereafter β-PhIO2, determined by combining results from powder X-ray diffraction, XANES and EXAFS are described.
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| Fig. 3 (a) L3-edge XANES spectra for the series of compounds containing iodine in the −1 to +7 oxidation states. (b) Trend in iodine L3-edge and pre-edge XANES. The energies are listed in Table S1.† | ||
8 (hereafter referred to as α-PhIO2, ESI Fig. S4†), is striking. Disconcertingly, the PXRD patterns of our sample of white PhIO2, Fig. 4b, are significantly different from that calculated for α-PhIO2. By simulated annealing using a fragment of the α-PhIO2 structure and combining this information with distances obtained from the iodine L3-edge EXAFS data, a new rhombohedral phase of PhIO2, hereafter β-PhIO2, was determined. Using the same approach but excluding one of the two oxygen atoms in the simulated annealing using a fragment of the α-PhIO2 structure, the unknown crystal structure of PhIO could also be determined. Crystal structure data and details of the Rietveld refinement are summarized in Table 2.
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| Fig. 4 XRPD patterns (black) and Rietveld plots (red) of (a) PhIO and (b) β-PhIO2. Insets: Magnification of the pattern for 2θ > 30°. | ||
| PhIO | α-PhIO2 a |
β-PhIO2 | |
|---|---|---|---|
| a Data for α-PhIO2,8 CCDC ref. code: IODYBZ.3 | |||
| Crystal structure data | |||
| Symmetry | Monoclinic | Monoclinic | Rhombohedral |
| Space group | P21/c | P21 | R3c |
| a (Å) | 14.306(4) | 12.9041(23) | 23.141(2) |
| b (Å) | 5.868(1) | 6.4023(14) | 23.141(2) |
| c (Å) | 7.407(4) | 4.0115(7) | 6.4155(2) |
| α (°) | 90 | 90 | 90 |
| β (°) | 101.04(3) | 99.018 | 90 |
| γ (°) | 90 | 90 | 120 |
| Volume (Å3) | 610.3(3) | 327.32 | 2975.4(2) |
| Z | 4 | 2 | 18 |
| Rietveld refinement | |||
| Refined profile range (°2θ) | 3–100 | 5–110 | |
| Step size (°2θ) | 0.01 | 0.01 | |
| Number of structural parameters | 15 | 16 | |
| Number of profile parameters | 7 | 7 | |
| Number of background parameters | 20 | 25 | |
| Number of restraints | 3 | 5 | |
| R p (%) | 7.10 | 6.73 | |
| R wp (%) | 6.43 | 9.71 | |
| R Bragg (%) | 10.35 | 10.81 | |
The oxygen positions in both structures are associated with high uncertainty due to poor contrast with the neighboring iodine atoms. The fit for the PhIO structure was improved by restraining the intramolecular I–O distance (2.04 Å), the intermolecular I⋯O distance (2.37 Å) and the I–O–I bond angle (114°) determined by K-edge EXAFS (Fig. 5a and b).5 The closest I⋯I distances are respectively 3.72 Å, 3.72 Å, 3.93 Å, 4.01 Å, 4.01 Å and 4.39 Å (Fig. 5c). Pleasingly this gives an average of 3.96 Å – very close to the single I⋯I distance of 3.95 Å that was assigned from the earlier iodine K-edge EXAFS measurements.5 The pairing of two chains in PhIO is reflected by the crystal symmetry and a 21-axis along the b-axis. The [I–O⋯I–O⋯]n chains are found in layers which are separated by a double layer of phenyl groups parallel to the c-axis (Fig. 5a and d). The phenyl groups are tilted relative to each other; an ortho C–H group points towards the middle of the adjacent phenyl ring. The distance between the centroid of the phenyl ring and the H atom of this C–H group is 2.66 Å and the angle between the planes of the two rings is approx. 142 ± 5°. The additive effect of these supramolecular interactions provides an obvious explanation for the extreme insolubility of PhIO.
The extracted k3-weighted L3-iodine EXAFS spectrum and the modulus of the phase-corrected Fourier transform of β-PhIO2 are shown in Fig. 6. Restraints for I–O distances were provided by analysis of the spectrum and those for O–I–O and C–I–O angles were derived from a survey of the solid structures of 23 iodyl compounds (ESI Fig. S5 and S6†). Intra- and intermolecular I–O bonds for α-PhIO2 and β-PhIO2 along with pertinent angles, torsion angles and Debye–Waller factors, 2σ2 are compared in Table 3. Only intramolecular bond distances are refined due to the limited k-space resolution of the L3-edge spectrum. The residual R-value, as defined by Binsted et al.9 was 12.7.
| Crystal structure | EXAFS | |||
|---|---|---|---|---|
| α-PhIO2 | β-PhIO2 | R (Å) | 2σ2 (Å2) | |
| a During refinement these values were restrained to the value of 1.78 Å determined from the EXAFS experiments. b This angle was restrained to 100° (based on CSD3 analysis ESI Fig. S5). c These angles were restrained to 95.7° (based on CSD3 analysis ESI Fig. S6). | ||||
| I–C | 2.01 | 2.10 | 2.109(8) | 0.002(1) |
| I–O | 1.92 | 1.78a | 1.783(4) | 0.006(1) |
| I–O | 2.02 | 1.78a | 1.783(4) | 0.006(1) |
| I⋯O | 2.58 | 2.24 | N/A | N/A |
| I⋯O | 2.66 | 2.79 | N/A | N/A |
| I⋯O | 2.73 | 3.25 | N/A | N/A |
| O–I–O | 147.9 | 99.6b | N/A | N/A |
| O–I–C | 76.4 | 95.6c | N/A | N/A |
| 91.1 | 95.8c | |||
| O–I–C–C | 52.3 | 40.9 | 80.9 | N/A |
| 80.9 | 59.4 | 80.9 | ||
The crystal structures of α-PhIO2
8 and β-PhIO2 are compared in Fig. 7. Strong intermolecular O⋯I halogen bonding between the monomers resulting in the formation of a chain similar to that found in PhIO (Fig. 5a) is a feature for both phases (Fig. 7a); however the crystal packing of these chains differs dramatically. For both structures the plane through the two O atoms and I atom of the iodyl group is perpendicular to the plane of the phenyl group. The oxygen atoms are located above and below the phenyl plane, Fig. 7b. Intramolecular I–O bonds in β-PhIO2 are 0.2(5) Å shorter than that for α-PhIO2 and on average the intermolecular I⋯O halogen bonds are slightly longer for β-PhIO2 compared to α-PhIO2 (2.76 Å vs. 2.66 Å). The environments around the iodyl unit in both structures are similar with three oxygen donor atoms from adjacent iodyl units furnishing I⋯O halogen bonds (Fig. 7c). Furthermore, a sphere of iodine atoms are located within the range of the sum of the iodine van der Waals radii (ESI Fig. S7†). α-PhIO2 shows a lamellar structure with AB stacks of sheets, Fig. 7d, where PhIO2 units are related through a 2-fold screw axis. The phenyl groups are stacked with the ring centroids 4.0 Å apart. The arrangement of the monomers in β-PhIO2 comprises strands of three parallel (I–O⋯I–O)n chains (Fig. 7d), whose phenyl groups point outwards forming stacks of tilted benzene rings with a distance of 6.4 Å between the centroids of the benzene units. This distance is clearly far too large to implicate any π–π bonding interactions (the distance between the layers in graphite is 3.41 Å (ref. 10)). Interactions of the π electron systems of the phenyl rings with phenyl ortho C–H groups from an adjacent stack are the more important supramolecular associations. The PhIO2 units are related by a three-fold rotation axis. The result is pillars comprising I and O atoms parallel to the c-axis. β-PhIO2 has a 1% larger unit cell volume per PhIO2 molecule compared with α-PhIO2.
It is interesting to note that (i) using the standard synthesis11 (treatment of PhI with excess of peracetic acid) we do not prepare bulk samples of α-PhIO2 and that (ii) the specific single crystal of α-PhIO2 that was used for the published X-ray structure determination was not derived from such a bulk synthesis; rather it was crystal-picked from the bulk powdered product obtained from a common procedure for the synthesis of PhIO (treatment of iodobenzene dichloride with NaOH).8 No explanation was proffered in the article about the cause of oxidation. Given the structural similarity we have found between PhIO and α-PhIO2, speculation of an influence on the crystallization of α-PhIO2 by a surrounding bulk of mircocrystalline PhIO seems reasonable. This might occur through a solution–solid mechanism or a solid state mechanism. Interestingly we observe bleaching of our solid samples of PhIO (stored in air-tight vials at room temperature) over months. Both XANES and PXRD reveal that these initially spectroscopically/crystalline pure samples of PhIO have converted largely to β-PhIO2. However minor fractions of both PhIO and α-PhIO2, as revealed by the position of the unique first Bragg peak for the patterns of PhIO, α-PhIO2 and β-PhIO2 are well-resolved in the pattern of the aged PhIO-sample. See overlaid powder patterns and XANES for fresh and aged PhIO, α-PhIO2 and β-PhIO2 in ESI Fig. S8 and S9.† Conversion of PhIO to PhI and PhIO2 is known to occur by solvent mediated disproportionation in H2O (ref. 12) and DMSO (ESI Fig. S10†). PhIO is used more commonly than PhIO2 as an oxidant (counterintuitively when considering their respective iodine oxidation states). Thus, suffice it to say our observation is significant for workers utilizing PhIO as a terminal oxidant in syntheses, since the condition of the reagent may be critical. While for some oxidation reactions it is possible that both PhIO and PhIO2 can be interchangeable, we observed that when attempting to oxidize substrates by PhIO2 using [Fe(tpena)]2+ as the catalyst13 using the same conditions for which PhIO is highly effective and selective,1 the catalytic activity decreased dramatically.
We have discovered that PhIO, a compound that has been known for one and quarter centuries4 and described as amorphous,5 can be microcrystalline. Building on previous EXAFS work,5 this has allowed for its more precise structural determination using PXRD. An analysis of the structure–property relationship in the parent organic hypervalent iodine compounds PhIO and PhIO2 is now possible. For the latter, our work has uncovered a new phase. In our hands this (β) phase of PhIO2 is the predominant phase obtained by deliberate syntheses. For PhIO, the intra- and inter-molecular I–O bonds in polymeric PhIO, together with the C–H⋯π interactions between the phenyl groups in individual chains, give a clear physical explanation for the insolubility of this important reagent. While this can be impractical, this feature is inherent for the relatively long shelf life of solid state PhIO, making it advantageous for handling. That said, we can also document that aging of PhIO occurs and if this goes unnoticed it may result in poorer yields from reactions when PhIO is ostensibly used as a terminal oxidant. An important point of this work is that the development of homogeneous metal-based catalysts like [Fe(tpena)]2+, which are able to break up polymeric PhIO to extract the potent monomeric PhIO, and even activate it further by coordination, opens up new methodologies for the catalysis of selective homogeneous oxidations.
Iodylbenzene (PhIO2) was synthesized by the method reported by Sharefkin11 in 45% yield. Elemental analysis calcd (%) for C6H5IO2 C: 30.54, H: 2.14, I: 53.77. Found C: 30.45 and 30.57, H: 2.12 and 2.12, I: 53.81 and 53.67 (Atlantic Microlab Inc. Norcross GA, USA).
Caution : potentially explosive compounds.4
[Fe(tpena)OIPh](ClO4)2 was prepared as described previously.2 The solid is unavoidably contaminated by [Fe2(tpena)2O](ClO4)4 and [Fe(tpena)](ClO4)2.1 Neither of these compounds contain iodide and hence do not interfere with the XANES measurements.
8 as a fragment (for the structure solution of PhIO one of the two O-atoms was excluded from the searching fragment). The structures were refined by the Rietveld method using GSAS-II.23 In addition to refinement of an overall scale factor and the 2θ-displacement, the profiles were refined by three peak broadening parameters (u, v, and w), one peak shape and one asymmetry parameter. The structural parameters refined count cell parameters, coordinates and atomic displacement factors. Due to the limited angular resolution of the diffraction peaks, the iodobenzene fragments in both PhIO as well as in β-PhIO2 were refined as rigid bodies in order to minimize the number of structural parameters. By doing this the coordinates for the PhI moiety can be refined using only 5 parameters. The PhI fragment used was taken from the crystal structure of diphenyliodonium iodide.24 Based on an analysis of relevant PhI-containing structures deposited in CSD,3 solved at room temperature and with R < 5%, this structure showed to be a good representative for the iodobenzene fragment. H-atoms were included as riding atoms. The atomic displacement factors of similar elements were set equally, and were not refined for H-atoms. Additionally due to the limited angular resolution and heavy Fourier rippling around iodine atoms the oxygen positions could not be refined without the introduction of restraints. For the PhIO structure, the I–O distances were restrained to 2.04 Å, I⋯O to 2.37 Å and I–O–I to 114°, according to the distance determined from the K-edge EXAFS study of PhIO by Carmalt et al.5 For the β-PhIO2 structure, the intramolecular I–O distances were restrained to 1.78 Å, which is the distance determined by EXAFS. The inter-molecular O–I–O and C–I–O angles were restrained to 100.0° and 95.7°, respectively, based on a CSD-survey (see ESI Fig. S5 and S6†).
Footnote |
| † Electronic supplementary information (ESI) available: Details of XANES, bond angles for the intramolecular O–I–O and C–I–O moiety of 23 iodyl compounds extracted from the CCDC, diffractogram of an aged sample of PhIO and NMR spectra of disproportionated and depolymerized PhIO obtained by “dissolution” in dmso-d6. CCDC 1506866 and 1506867. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c6dt02937j |
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