Open Access Article
Mireille
Khalil
a,
Zahia
Boubegtiten-Fezoua
a,
Nadja
Hellmann
*b and
Petra
Hellwig
*a
aLaboratoire de Bioélectrochimie et Spectroscopie, UMR 7140 Université de Strasbourg CNRS, 1 Rue Blaise Pascal 67070, France. E-mail: hellwig@unistra.fr; Tel: +33 368 85 12 73
bInstitute for Molecular Biophysics, University of Mainz, Jakob-Welder-Weg 26, 55128 Mainz, Germany. E-mail: nhellmann@uni-mainz.de; Tel: +49 6131 392 3567
First published on 22nd September 2016
Hemocyanins are large oligomeric respiratory proteins found in many arthropods and molluscs. Here we give infrared spectroscopic evidence of a high stability towards exposure to sub-zero temperatures for hemocyanins from the arthropods Limulus polyphemus and Eurypelma californicum at different pH values. Small but distinct temperature induced changes of the secondary structure were observed, but a stable core of at least 40% α-helical structure is preserved as identified in the infrared spectra obtained between 294 and 20 K. The structural changes differ in detail somewhat for the two hemocyanins, with overall fewer changes observed in the case of E. californicum. Notably, in both cases the overall changes in the α-helical content are found to be fully reversible. The small changes in the secondary structure and reversibility upon cold treatment seem to be a particular property of the two hemocyanins, since it was not observed for myoglobin studied in the same way.
Eurypelma californicum is a spider found in the deserts of southwest North America, a particularly hostile environment which is characterized by large temperature fluctuations between day and night. E. californicum Hc is a 24-mer complex with a molecular mass of 1.7 MDa including seven types of subunits.11,12 Each subunit shows similar oxygen binding behavior despite their unique immunological and physicochemical properties.11,13 The horseshoe crab, Limulus polyphemus Hc, lives in the eastern coast of North and Central America in varying habitats depending on the life cycle.14 The Hc from L. polyphemus, with a molecular mass of 3.5 MDa, is composed of 48 subunits. The crystal structure of the homohexamer of subunit II of L. polyphemus Hc was resolved with a resolution of 2.4 Å.15–17 A relatively high sequence homology of 60% was reported between the Lpol-II subunit from L. polyphemus and the analogous subunit “a” in E. californicum.18
E. californicum Hc was shown to be more stable with regard to chemical denaturation and temperature induced unfolding in the native oligomer than as an isolated subunit.9,19 Pavlina et al. investigated the stability of the quaternary structure of L. polyphemus and P. vulgaris Hcs using fluorescence spectroscopy in the presence of denaturing agents.20 They concluded that the quaternary structure of the Hcs proteins is stabilized by hydrophilic and polar forces and that the denaturation process consists of two steps: the dissociation of the native molecule into its subunits and the denaturation of the subunits. Stabilization due to oligomer formation was also reported for other arthropod Hcs.21,22
In the study presented here, we investigated the structural changes induced in these Hcs by very low temperatures. Infrared spectroscopy is an established tool for the characterization of the secondary structure of proteins and peptides. Here we monitored the amide I signal at different pH values as a function of temperature from room temperature down to 20 K for Hcs from E. californicum and L. polyphemus. For comparison, we also studied myoglobin as an example of small monomeric proteins. Using IR-spectroscopy, samples can be studied at high concentrations, which are close to the in vivo concentrations (up to 100 mg mL−1). To the best of our knowledge no data for the cold stability of L. polyphemus and E. californicum Hcs or any other large oligomeric proteins have been reported yet.
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2 (v/v) with 0.1 M Tris/HCl pH 7.8, 5 mM CaCl2, 5 mM MgCl2 in order to stabilize the protein. The sample was then centrifuged for 30 min to remove blood cells. The hemocyanins were purified from the supernatant by gel filtration (S300 26/60, GE Healthcare) in 0.1 M Tris/HCl pH 7.8, 5 mM CaCl2, 5 mM MgCl2 at 4 °C.19 Hc from L. polyphemus was obtained from the hemolymph (obtained as described in Martin et al.23) by centrifugation at 4 °C: 15 min at 10
000g, the resulting supernatant was spun again for 15 min at 10
000g and the supernatant from this step spun for 2 h at 300
000g. The pellet was resuspended in 10 mM Tris/HCl, 10 mM CaCl2, 30 mM MgCl2 (pH 7.8 at 20 °C) and kept at 4 °C. Purity of the samples was verified by SDS-gel-electrophoresis (Fig. S1, ESI†). The Hcs were studied in 20 mM Tris, 5 mM CaCl2, 5 mM MgCl2 (E. californicum, pH 7.0, 7.8, 8.5) and 20 mM Tris, 10 mM CaCl2, 10 mM MgCl2, 100 mM NaCl (L. polyphemus, pH 7.0, 7.5, 8.5) with the pH adjusted at 20 °C. Samples were transferred into the respective buffer by ultrafiltration using centrifugal filters (100 kDa cut-off) shortly before the experiment. Sample concentration was 2 mM referring to subunits, corresponding to about 150 mg mL−1. Myoglobin from equine heart was purchased from sigma Aldrich (France). The sample was dissolved in 20 mM Tris, pH 7.5 with a final concentration of 2 mM.
The FTIR-ATR measurements of Hcs were performed at different pH values (7, 7.5/7.8 and 8.5) in the attenuated total reflection mode (ATR Harrick crystal, Diamond Prism). 2 μL of Hcs protein solution were deposited in order to obtain a film on the diamond crystal. It is noted that after drying the samples on the window the concentration was probably significantly higher than 150 mg mL−1 mentioned above and the final pH was not defined.
The temperature close to the sample was controlled using a silicon diode (Scientific Instruments Calibration, precision of ± (0.5 K)). The temperature was regulated from 294 to 20 K with a heating resistor monitored using a digital temperature controller (Model 9700-1-1, Scientific Instruments, West Palm Beach, FL, USA).
The individual amide I band components were obtained at 1610, 1618, 1633, 1644, 1660, 1679 and 1694 cm−1 and have been assigned to the secondary structure elements as follows: α-helices (1660 cm−1), unordered structures (1644 cm−1), parallel β-sheets (1633 cm−1), anti-parallel β-sheets (two bands in 1618 and 1694 cm−1) and β-turns (1679 cm−1), on the basis of a large body of experimental data.26–29 A complete fit of the amide I bands was only possible when adding a band at 1610 cm−1. The position of this signal is not typical for any known amide group implicated in common secondary structure elements. Finally, the area of each individual band was used to calculate its relative contribution to the overall area of the measured spectrum between 1729 and 1591 cm−1. The absolute error due to the deconvolution variability and the baseline correction was estimated to be about ±3.5%. All spectra shown were normalized on the basis of the area of the amide I band. No smoothing procedures were applied.
, represent the average of the difference between the two measurements made by the cryostat and the FTIR-ATR averaged over all conditions (pH) and over both species, x, the difference between both values: (ATR − cryostat) for any particular condition and species and n, the total number of differences.
The amide II band is seen at around 1537 cm−1 (Fig. S2, ESI†). It includes the coupled stretching ν(C
N) and bending δ(N–H) vibrational modes and it is influenced by the tertiary structure. This is in line with previous reports on the low temperature behavior of proteins, a shift of about 9 cm−1 towards higher wavenumbers, reflecting the changes in the hydrogen bonding structure.30 Here, we will focus on the amide I vibrational mode, which involves the contribution of the ν(C
O) stretching vibration of the protein polypeptide chains, specific to the secondary structure of a protein.31,32 This band can be used to follow conformational changes induced by an external parameter, such as temperature.33,34
Fig. 1 shows the comparison of the amide I region for both Hcs at 294 K and 20 K and for different pH values (pH 7, 7.5/7.8 and 8.5). The data reveal slight changes in the overall structure. In the case of Hc from L. polyphemus, the amide I band centered at 1660 cm−1 adopts essentially the same shape for the three pH values measured (Fig. 1A and C), while a slight change occurs in the case of E. californicum Hc (Fig. 1B and D). In order to highlight these changes, difference spectra were calculated by subtracting the absorbance spectra at extreme pH values (7 and 8.5) from the spectrum at the intermediate pH (7.5 or 7.8). The details of the deconvoluted amide I bands are shown in Fig. S3 and S4, ESI.† Each component was assigned to secondary structure elements as follows: α-helices (1659–1661 cm−1), unordered structures (1642–1646 cm−1), parallel β-sheets (1629–1635 cm−1), anti-parallel β-sheets (two bands in 1616–1625 cm−1 and 1693–1695 cm−1 regions) and β-turns (1678–1682 cm−1), on the basis of a large body of experimental data.26–29
| Secondary structure (%) | Hemocyanins | pH 8.5 | pH 7.5/7.8 | pH 7 | Average deviation ATR − cryostat ± stddev. | |||
|---|---|---|---|---|---|---|---|---|
| ATR | Cryostat | ATR | Cryostat | ATR | Cryostat | |||
| α-Helix | L. polyphemus | 36 | 43 | 36 | 43 | 35 | 43 | −4.7 ± 3.1 |
| E. californicum | 39 | 42 | 37 | 37 | 36 | 39 | ||
| Unordered | L. polyphemus | 29 | 23 | 25 | 23 | 29 | 22 | 3.5 ± 2.4 |
| E. californicum | 25 | 23 | 24 | 21 | 24 | 23 | ||
| Parallel β-sheet | L. polyphemus | 11 | 10 | 13 | 9 | 13 | 9 | 1.3 ± 2.6 |
| E. californicum | 11 | 14 | 12 | 12 | 13 | 11 | ||
| Anti//β-sheet | L. polyphemus | 9 | 4 | 11 | 4 | 8 | 4 | 5.3 ± 1.3 |
| E. californicum | 10 | 5 | 11 | 7 | 11 | 4 | ||
| β-Turns | L. polyphemus | 15 | 20 | 15 | 21 | 15 | 22 | −5.5 ± 2.3 |
| E. californicum | 15 | 16 | 16 | 23 | 16 | 23 | ||
In order to compare the stability of hemocyanins with another respiratory protein, an experiment on myoglobin was performed under the same experimental conditions as Hcs (see Fig. 2A). Table 2 shows the contribution of each secondary structure elements obtained on the basis of the deconvolution of the amide I band. The major contribution corresponds to α-helical structures of 64% plus 7% of the unordered structure. This result is in very good agreement with the FTIR analysis reported by Meersman et al. which show that the secondary structure consists of 73.5% of the α-helical plus unordered structure.34 The contribution of the extended chain, β-turns and the anti-parallel β-sheet remains stable upon lowering the temperature. Upon cooling the native α-helical structure decreases by (−28%) in favor of the unordered structure (+26%) at 10 K (see Table 2 and Fig. 2B).
| Temperature (K) | α-Helices | Unordered | Extended chain | β-turns | Anti-//β-sheet |
|---|---|---|---|---|---|
| 294 | 64 (49) | 7 (20) | 10 (10) | 13 (15) | 6 (6) |
| 250 | 59 (49) | 14 (22) | 10 (11) | 13 (14) | 4 (4) |
| 200 | 58 (47) | 17 (26) | 9 (10) | 12 (13) | 4 (4) |
| 150 | 52 (44) | 21 (26) | 10 (11) | 13 (14) | 4 (5) |
| 100 | 50 (45) | 21 (24) | 11 (11) | 13 (14) | 5 (6) |
| 80 | 45 (45) | 24 (24) | 10 (9) | 15 (15) | 6 (7) |
| 50 | 43 (43) | 26 (26) | 12 (12) | 14 (14) | 5 (5) |
| 40 | 43 (42) | 27 (27) | 11 (11) | 14 (14) | 5 (6) |
| 30 | 43 (42) | 28 (28) | 11 (11) | 14 (14) | 4 (5) |
| 20 | 39 (41) | 30 (28) | 11 (11) | 14 (14) | 6 (6) |
| 10 | 36 (36) | 33 (33) | 11 (11) | 13 (13) | 7 (7) |
Fig. 3 shows the relative contribution of each secondary structure element obtained on the basis of the deconvolution. The raw data used to prepare the graphs are summarized in Fig. S3 and S4 and Table S1 (ESI†). In all cases, the major contribution results from the band centered at around 1659–1661 cm−1, reflecting an α-helical structure of 35 to 43%.
The direct comparison of the data of the two species at different pH values reveals that at 294 K the α-helical content is a little higher for the Hc from L. polyphemus (differences of 4, 6 and 1% for pH 7, 7.5/7.8 and 8.5, respectively, seen in Fig. 3A and B and Table S1, ESI†); the shift of the later being lower than the calculated error. The parallel β-sheet, anti-parallel β-sheet and β-turn structures are approximately the same in the structures of L. polyphemus and E. californicum Hcs at 294 K and at pH 7, 7.5/7.8. At pH 8.5, the contribution of the β-turn structure decreases for the sample from E. californicum at 294 K, explaining the change in the shape of the amide I band seen in Fig. 1. In contrast, the relative contribution of β-turns in the L. polyphemus Hc structure remains stable under the same conditions.
The same pH dependence was then studied at 20 K. A similar behavior was observed for both proteins with respect to changing pH when compared to the data obtained at 294 K. One exception was the unordered structure that decreases for the protein from L. polyphemus at 20 K (see Fig. 3C and D and Table S1, ESI†).
More precisely, the strong peak at 1663 cm−1 decreases, leading to a negative peak in the difference spectra, while the absorbance at 1631 cm−1 increases, producing a positive peak (see full lines in Fig. 4). These structural changes are completely reversible, as seen from the spectra of L. polyphemus Hcs obtained after reheating the sample (dashed lines in Fig. 4 and Table S4, ESI†). The signals at 1696 and 1631 cm−1, which include the parallel and antiparallel β-sheets, partially overlap with the decrease in the unordered structure leading to a signal at 1663 cm−1. These structural changes are in agreement with the percentages of parallel β-sheets and unordered structures given by deconvolution (Table S4, ESI†). It is important to point out that the shifts observed in the secondary structure for both proteins during cooling correspond to small global changes in the magnitude of 3 to 7% of the corresponding absorbance spectra. For E. californicum Hc we also observed nearly fully reversible difference spectra as a function of temperature at pH 8.5, as seen in Fig. S5 (ESI†).
Fig. 5A–C give an overview of the relative contribution of the unordered structure and parallel β-sheets of L. polyphemus Hc at all pH values as a function of temperature. It seems that from 294 to 100 K a rather stable secondary structure composition exists, whereas between 50 and 100 K a transition of the secondary structure takes place. This transition involves a gradual decrease of the unordered structure and a simultaneous increase of parallel β-sheets, a tendency that is most pronounced for pH 8.5. For E. californicum Hc, however, no transition temperature was observed for any pH values studied (Fig. 5D–F); the structural ensemble was stable during freezing.
FTIR spectroscopy showed that upon cooling down to 20 K only small, but largely reversible changes in the secondary structure elements occur. The oxygen binding level is not altered by cold treatment down to −197 °C. Thus, overall both proteins are remarkably stable upon exposure to freezing temperatures. In contrast, freezing of myoglobin and monoclonal antibody 1 (mAb1) in solution was reported to result in protein unfolding with transition temperatures of −12.7 and −23 °C, respectively.34,39 In general, cold denaturation unfolding experiments are performed under conditions which circumvent the crystallization of ice in the relevant temperature region (e.g. by choosing destabilizing solvent conditions or high pressure). A possible explanation for the absence of unfolding in our study could then be the employment of thin films with a high protein concentration (about 150 mg mL−1 or even higher, due to drying of the sample to a film), which could lead to a stabilization of the protein structure. We note, however, that the oxygen binding experiments have been performed in solution; thus once back under physiological conditions this putative stabilization is not required any more. Thus it seems that the high stability and activity under extreme conditions is an intrinsic property of the protein. This is supported by the observation that myoglobin exposed to the same treatment recovers some of the α-helical structure having lost at low temperatures, but not all: the level at 294 K is only 49% instead of 64% as observed before cold treatment, thus having irreversibly lost about 15% α-helical structure. The corresponding values for the two Hcs are 1 to 2%.
The active site is mainly α-helical17 and does not seem to suffer distortions as indicated by the preservation of oxygen binding capacity at least down to –197 °C. This is in line with the observation that even at 20 K the α-helical structure that is observed for all three pH values is stable with values close to those reported on crystal structures (43%, 1NOL.pdb), namely 43–40% at pH 8.5, 43–35% at pH 7.5 /7.8 and 41–37% for pH 7.
A small difference can be noted between the Hcs from the two organisms in terms of stability of the unordered and β-sheets structures. In the case of E. californicum Hc, practically no changes in the secondary structure content were found in the whole temperature range, whereas in L. polyphemus Hc the amount of unordered and parallel β-sheet structures changes below 50 K, especially at pH 8.5. Studies employing treatment with SDS revealed that Hc from L. polyphemus in this case is less stable than the Hc from E. californicum.40 Together with the result of our study this might indicate that this lowered stability is a general feature.
Whether the changes in the structure upon exposure to low temperatures and pH observed for the two proteins relate to differences in the biological function cannot be answered based on the present study. It is interesting to note, however, that L. polyphemus Hc is exceptional in the sense that it is one of the few Hcs with an inversed Bohr-effect and regulated by chloride, while Hc from E. californicum has a normal Bohr-effect.38,41
Another point that needs to be discussed is the effect of temperature on the pH value in the solution, since the pH value of buffer solutions may depend on temperature. For Tris–HCl buffer, in which both Hcs are solubilized, an increase of ∼1.2 units in the temperature range from +25 to −30 °C was reported by Kolhe et al.42 Estimations of the pH change of Tris-buffer when changing temperature from 20 to −194 °C were identified to correspond to +2.3 units in buffer solution alone, but much less pronounced in the presence of 40 mg mL−1 albumin (+0.1).43 Due to the high protein concentration employed in our study, a similar stabilization of the pH might be expected, although this effect is most likely dependent on the protein type. The structural changes studied here are thus essentially based on the effect of external parameters like temperature or pH, but not on the temperature dependent pH change of the buffer.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: 10.1039/c6cp03510h |
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