Open Access Article
Gizem
Saritemur
a,
Laura
Nomen Miralles
a,
Deborah
Husson
a,
Mateusz B.
Pitak
b,
Simon J.
Coles
b and
John D.
Wallis
*a
aSchool of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham NG11 8NS, UK. E-mail: john.wallis@ntu.ac.uk
bUK National Crystallography Service, Chemistry, University of Southampton, Highfield Campus, Southampton, SO17 1BJ, UK. E-mail: S.J.Coles@soton.ac.uk
First published on 4th January 2016
Crystal structures of the salts of 1,8-naphthalaldehydic acid (8-formyl-1-naphthoic acid) show one of two types of interaction between the functional groups. In the more commonly observed case, a carboxylate oxygen lies close to the aldehyde carbonyl carbon atom (O⋯C: 2.445–2.630 Å) and makes an n–pi* interaction. However, in two other cases the carboxylate group has rotated so that the aldehyde now directs its hydrogen atom at the face of the carboxylate group and forms a surprisingly short contact with the carbon atom (H⋯C: 2.29 and 2.42 Å). This interaction is likely to be electrostatic in nature.
O⋯C
O, in which a sp2 oxygen lone pair impinges on a carbonyl carbon, can be regarded as n–π* interactions and have been proposed to stabilise the conformations of proteins,1 polymers2 and small molecules such as substituted N-acetyl-proline methyl esters 1 (Scheme 1).3,4 The interaction leads to a small pyramidalisation of the carbonyl carbon involved. Interestingly, it has been proposed that such interactions can provide a link in the relay of chirality in a protein,5 and there is evidence that the formation of such an interaction modifies the properties of the groups involved.4 Furthermore, in the crystal structure of aspirin 2 a similar interaction is observed but between the hydroxyl oxygen of the carboxylic acid and the ester carbonyl group (Scheme 1). Calculations on aspirin and its anion support the existence of such stabilising interactions, which are larger for the anion, and which may be responsible for the high acidity of aspirin, as well as its efficacy as an acyl transfer agent in biology.6 The O⋯C distances from neutral oxygen observed in these interactions are typically >2.8 Å and calculations suggest stabilisations varying from 0.9 kcal mol−1 in aspirin to about 0.27 kcal mol−1 between two amide groups.
We have been investigating the interactions and reactions of the more nucleophilic dimethylamino group with various electrophilic organic groups placed in the peri positions of the naphthalene ring system. This work, initiated by Dunitz et al. on studies with carbonyl containing electrophiles as in 3 and 4,7 has been extended to electron deficient alkenes e.g.5 some of which react with the peri-dimethylamino group to produce zwitterions with long C–N bonds between the groups as in compound 6 (Scheme 2).8–10 This approach has been extended to the biphenyl and triptycene scaffolds.11,12 Together with several compounds containing short transannular N⋯C interactions13 a set of structures with N⋯C separations over the range 2.764 to 1.612 Å has been built up which represent different stages in the formation of the N–C bond. The shorter N⋯C distances in this range correspond to long covalent N–C bonds. The longer N⋯C separations observed for interactions with esters and amides can be considered as n–π* interactions corresponding to early stages in bond formation and are associated with small pyramidalisations of the carbonyl carbon towards the nucleophile. Such an interaction may be the initiation for further chemical reactions. Thus, the aldehyde 3 reacts readily on oxygen with a proton or an acyl group at 0 °C with concomitant formation of a N–C bond between peri-substituents to give 710 and 8,14 and similar protonations have been observed with some analogous ketones.15 In contrast, when the dimethylamino group is replaced by the much less nucleophilic methoxy group there is very little change in the MeO⋯C separations in a similar range of peri-naphthalenes 9–12 (2.550–2.611 Å), though there are small pyramidalisations of the adjacent ketone or amide groups towards the methoxy group (0.039–0.044 Å) (Scheme 3).16 Outside the peri-naphthalene series we have also observed similar contacts between an ether oxygen and a ketone,12 and between an ester carbonyl oxygen and a nitrile, leading to small distortions of the electrophilic functional group.17
Given the weak nature of interactions involving neutral oxygen, we decided to investigate the electrophile/nucleophile interactions involving the more nucleophilic negatively charged oxygen, and here we report the structures of a series of salts of 1,8-naphthalaldehydic acid (8-formyl-1-naphthoic acid) 13 in whose anion 14 a negatively charged carboxylate group could make a close approach to an aldehyde group. Such interactions would be the anionic equivalent of the n–π* interactions between carbonyl groups described above. The parent acid adopts a cyclic structure 15 in the solid and solution state, so that in this case the groups have interacted fully and formed a bond (Scheme 3).
C hydrogen bonds between molecules in adjacent stacks related by a two-fold axis (O3–H3A: 0.94(2), H3A⋯O1′: 1.84(2), O3⋯O1′ 2.785(4) Å, O3–H3A⋯O1′: 176.5(17)°). In contrast, the crystal structures of the salts of naphthalaldehydic acid show that the anion does not adopt a cyclic structure which would have to contain an alkoxy anion, but consists of a naphthalene system with the more stable carboxylate anion and aldehyde group as peri substituents.
O angle is 111.9(5)° similar to the “Bürgi–Dunitz” angle and consistent with the alignment of electron density from oxygen with the anti-bonding pi orbital of the carbonyl group. The shortest contact from the aldehyde's electron deficient hydrogen atom to the carboxylate group is to oxygen O(2) (2.32 Å) and this hydrogen lies 2.55 Å from the carboxylate carbon atom. Selected molecular geometry for the anion is given in Table 1. Both carboxylate oxygen atoms coordinate the same potassium ion, as well as each making a coordination to a second potassium ion. The aldehyde oxygen atom coordinates two potassium ions – one coordination roughly aligned with an oxygen sp2 lone pair (2.778(7) Å) and the other, rather longer, approximately perpendicular to the plane of the aldehyde group (3.341(7) Å). The water molecule bridges two potassium ions (O⋯K: 2.760(7) and 2.842(7) Å) and is involved in hydrogen bonds to carboxylate oxygen atoms (O(4)–H(41)⋯O(1): 2.09 Å, angle at H(41) 162.1° and O(4)–H(42)⋯O(2): 1.94 Å, angle at H(42) 166.9°).
| a/Å | b/Å | c, d/Å | e/Å | f, g/Å | θ/° | Angle between ringb/CO2− planes/° | Angle between ringb/CHO planes/° | Angle between CO2−/CHO planes/° | ΔC(O2−) from ring plane/Å | ΔC(HO) from ring plane/Å | Splaying of groups at C1 & C9 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a a = O(2)⋯C(12); b = O(3)–C(12); c = O(2)–C(11); d = O(1)–C(11); e = C(11)⋯H(12); f = O(2)⋯H(12); g = O(1)⋯H(12); θ = O(2)⋯C(12)–O(3). b Ring plane defined by its ten C atoms. | ||||||||||||
| Li·14 | 2.445(15) | 1.220(15) | 1.261(14), 1.253(13) | 2.57 | 2.33, 3.42 | 107.4(8) | 32.0(8) | 32.7(6) | 36(1) | −0.461(16) | 0.383(16) | −2.1, 3.8 |
| K·14 | 2.522(10) | 1.212(10) | 1.280(9), 1.241(10) | 2.55 | 2.32, 3.34 | 111.9(5) | 33.0(8) | 29.0(6) | 32(1) | −0.368(12) | 0.425(13) | −3.8, 4.6 |
| Cs·14 | 2.502(12) | 1.216(13) | 1.270(13), 1.248(12) | 2.56 | 2.31, 3.38 | 110.9(7) | 30.6(12) | 29.4(8) | 32(2) | −0.408(17) | 0.439(16) | −2.0, 3.5 |
| (PhNH)3C·14 | 2.6303(14) | 1.2115(15) | 1.2768(14), 1.2455(14) | 2.40 | 2.44, 2.92 | 111.17(8) | 47.6(1) | 28.5(1) | 31(2) | −0.3533(16) | 0.3283(17) | −1.9, 3.5 |
The cesium salt shows the same coordination pattern as for the potassium salt and the same asymmetry in the carboxylate group (1.248(12) and 1.270(13) Å). The carboxylate and aldehyde groups adopt similar positions with an O⋯C interaction distance of 2.502(12) Å, and a similar angle of approach to the carbonyl group (110.9(7)°) (Table 1). The aldehyde's hydrogen atom lies 2.31 Å from the carboxylate's oxygen O(2) and 2.56 Å from the carboxylate carbon atom. The eight cesium–oxygen coordination bonds lie in the range 3.052(8)–3.391(8) Å.
The crystals of the lithium salt of anion 14 crystallise in the monoclinic crystal system with space group P21/c and are twinned. The structure was refined with two twin components related by a 2-fold axis rotation about the [100] reciprocal lattice direction. The atomic connectivity is confirmed, but due to poor data quality and twinning the atomic positions and derived geometry are not very accurate.
The molecular structure and crystal packing for the lithium salt are shown in Fig. 4. The lithium ions are four-coordinate and there is no water contained in the crystal lattice. The conformation of the anion is similar to that in the potassium and cesium salts, and the carboxylate/aldehyde interaction has a O(2)⋯C(12) contact of 2.445(15) Å, and a O(2)⋯C(12)
O(3) angle of 107.4(8)° (Table 1). The aldehyde hydrogen lies 2.33 Å from carboxylate oxygen O(2), and 2.57 Å from the carboxylate carbon, similar to the potassium and cesium salts. The bond lengths of the carboxylate group are very similar (1.253(13) and 1.261(14) Å). The carboxylate oxygen atom remote from the aldehyde, O(1), coordinates to two lithium ions (O(1)–Li(1): 1.91(2) and 1.97(2) Å), while the second oxygen, O(2), coordinates just to one (O(2)–Li(1): 1.87(2) Å) as does the aldehyde oxygen (O(3)–Li(1): 1.95(2) Å). The angles at lithium between oxygen ligands lie in the range 97.9(10)–119.7(11)°.
:
1 salts with the naphthalaldehydic acid, while the reaction with 4-dimethylaminopyridine gave a 1
:
1 molecular compound between the expected DMAP salt of anion 14 and the cyclic form of naphthalaldehydic acid 15. The X-ray crystal structures of these materials were measured at low temperature. Secondary amines such as morpholine react and substitute the OH group of 15 rather than form a salt.19
The salt with sym-triphenylguanidine crystallises from methanol in the orthorhombic crystal system in space group Pbca. The molecular structures of the cation and anion and the hydrogen bonding between them are shown in Fig. 5, and their crystal packing arrangement in Fig. 6. The triphenylguanidinium cation, rather than adopting a conformation with three fold symmetry, aligns two of its N–H bonds towards the anion. The torsion between these two N–H bonds is 44.7°, and the two hydrogen atoms make hydrogen bonds to the two oxygen atoms of the anion's carboxylate group: H(1′)⋯O(1): 1.87 Å, H(3′)⋯O(2): 1.85 Å with angles of 157.3° and 166.9° at H(1′) and H(3′) respectively. This is a well-known motif between carboxylate and guanidinium cations.20 There is a further hydrogen bond between the anion from carboxylate oxygen atom O(2) and the third guanidinium (N)–H atom from a second cation: H(2′)⋯O(2): 1.89 Å, with an angle of 162.2° at hydrogen. The anion's conformation is similar to that observed in its group 1A metal salts, and the carboxylate oxygen O(2) lies at 2.6303(14) Å from the aldehyde carbon atom, and the O(2)⋯C(12)
O(3) angle is 111.17(8)° (Table 1). Thus, the carboxylate oxygen atom O(2) is involved in two hydrogen bonds and a O⋯C interaction, and the vectors of these three features lie roughly mutually perpendicular, with the hydrogen bonds lying closer to the axes of the oxygen atoms two sp2 lone pairs. The O(2)⋯C(12) interaction is slightly longer than in the metal salts, due to the greater rotation of the carboxylate anion out of the naphthalene plane presumably to optimise the formation of hydrogen bonds. The distance of the aldehyde hydrogen to the nearer carboxylate oxygen is also longer than in the group 1A salts (2.44 v. 2.31–2.33 Å), and its contact to the carboxylate carbon atom is shorter (2.40 v. 2.55–2.57 Å). 1H and 13C NMR spectra of the salt in acetone suggests that it has converted to a 1
:
1 mixture of triphenylguanidine and naphthalaldehydic acid in solution.
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| Fig. 6 Crystal packing arrangement (viewed along the c-axis) for (PhNH)3C·14 with the cations shown in blue. The anions are packed in face to face pairs. | ||
In contrast the crystal structures of the remaining two naphthalaldehydate salts showed a quite different interaction between the peri functional groups, in which the carboxylate group is strongly twisted out of the naphthalene plane and the aldehyde group directs its hydrogen atom in towards the carboxylate group. In the refinements of these two crystal structures, the positions and isotropic displacement parameters of the aldehyde's hydrogen atom and the hydrogens attached to nitrogen in the cation were refined, and not just placed in calculated positions. For the salt with N,N,N′N′-tetramethylguanidine measured at 110 K the structures of the anion and cation are shown in Fig. 7 and the hydrogen bonding arrangement and crystal packing are shown in Fig. 8. The crystal system is monoclinic and the space group P21/n. The plane of the aldehyde group lies at 21(2)° to the best plane of the naphthalene system, with the hydrogen atom directed towards the carboxylate group whose plane lies at 68.71(14) to the naphthalene system. The planes of the two functional groups lie at 58.8(5)°. There is a very short contact between the groups, from the electron deficient aldehyde hydrogen atom to the carbon of the carboxylate anion, (2.29(2) Å), and this hydrogen atom is at somewhat longer distances from both carboxylate oxygen atoms (O(1)⋯H(12): 2.54(2), O(2)⋯H(12): 2.65(2) Å). This interaction may be best viewed as an interaction of the electron deficient aldehyde hydrogen with the face of the carboxylate anion, with the hydrogen atom positioned at similar distances to the carboxylates oxygens which carry more of the net negative charge. The two functional groups are splayed apart both in the aromatic plane and perpendicular to it (Table 2). In the crystal packing arrangement hydrogen bonds connect two cations and two anions together in a “square” motif involving both hydrogens of each cation's amino group and the O(2) atom of the carboxylate group of each anion (H⋯O: 1.92(2) and 1.92(2) Å). The carboxylate group is asymmetric with the longer bond to the doubly hydrogen bonded oxygen atom (1.263(2) vs. 1.239(2) Å). The tetrasubstituted guanidinium cation is twisted to reduce steric interactions between two methyl groups, so that the N1–C15 and N2–C16 bonds make a torsion of 55.2°. The steric pressure is reduced by small pyramidalisations of the two nitrogen atom geometries, where the sums of bond angles are 358°, and the widening of bond angles C15–N1–C13 and C16–N2–C13 to 122.4–122.6° with consequent contraction of the CH3–N–CH3 angles to 114.7–115.2°.
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| Fig. 7 (a) The structure of the naphthaldehydate anion in (Me2N)2CNH2·14 showing the interaction between the two functional groups; (b) the structure of the cation in (Me2N)2CNH2·14. | ||
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| Fig. 8 (a) Hydrogen bonding linking the anions and cations in (Me2N)2CNH2·14; (b) crystal packing arrangement viewed down the a axis in (Me2N)2CNH2·14. | ||
| a/Å | b/Å | c, d/Å | e/Å | f, g/Å | θ/° | Angles c/e, d/e/° | Angle between ringb/CO2− planes/° | Angle between ringb/CHO planes/° | Angle between CO2−/CHO planes/° | ΔC(O2−) from ring plane/Å | ΔC(HO) from ring plane/Å | Splaying of groups at C1 & C9 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a a = O(2)⋯C(12); b = O(3)–C(12); c = O(2)–C(11); d = O(1)–C(11); e = C(11)⋯H(12); f = O(2)⋯H(12); g = O(1)⋯H(12); θ = O(2)⋯C(12)–O(3). b Ring plane defined by its ten C atoms. | |||||||||||||
| TMG-H·14 | 3.043(2) | 1.211(2) | 1.263(2) 1.239(2) | 2.29(2) | 2.65(2), 2.54(2) | 125.64(14) | 91.7(5), 86.4(5) | 68.71(14) | 21(2) | 58.8(5) | −0.265(2) | 0.319(3) | −3.1, 3.6 |
| DMAP-H·14·15 | 2.920(3) | 1.184(2) | 1.240(2) 1.260(2) | 2.42(2) | 2.60(2), 2.76(2) | 119.77(19) | 83.8(6), 91.8(6) | 68.8(2) | 32(2) | 45.6(5) | −0.065(2) | 0.106(3) | −4.0, 4.2 |
X-ray crystallography showed the material isolated by treatment of naphthalaldehydic acid with DMAP contained the 4-dimethylaminopyridium salt of naphthalaldehydic acid along with one equivalent of the acid itself in its cyclic form 15 (Fig. 9). The crystals are monoclinic with space group P21/n, and contain stacks along the a axis comprising centrosymmetric pairs of cyclised naphthaldehydic acid molecules 15 alternating with centrosymmetric pairs of 4-dimethylaminopyridinium cations. The naphthalaldehydate anions lie between the stacks with their naphthalene planes perpendicular to the other species (Fig. 10). The molecules are linked together by hydrogen bonding, thus two naphthalaldehydate anions and two dimethylaminopyridinium species are linked into a “hexagonal” arrangement by one of the carboxylate oxygens, O(1), which makes a short hydrogen bond to the N–H group (1.73 Å, O(1)⋯H(1)–N(1): 175.8°) and a rather longer one to the hydrogen at the 2-position on the pyridinium ring (2.36 Å, O(1)⋯H(41)–C(41): 175.4°). The second carboxylate oxygen atom, O(2), is hydrogen bonded to the hydroxyl group of the cyclised naphthalaldehydic acid molecule (O(2)⋯H: 1.76 Å, O(2)⋯H(61)–O(6): 178.5°) (Fig. 11). The lengths of the two carboxylate C–O bonds in anion 14 are distinctly different (O(1)–C(11): 1.260(2), O(2)–C(11): 1.240(2) Å), the longer bond being involved in two hydrogen bonds rather than one.
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| Fig. 9 Molecular structures of the three components of the co-crystal between 4-dimethylaminopyridinium naphthalaldehydate and naphthalaldehydic acid. | ||
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| Fig. 11 Hydrogen bonding arrangement in the co-crystal between 4-dimethylpyridinium naphthalaldehydate and naphthalaldehydic acid. | ||
In the anion, the aldehyde and carboxylate groups lie at 45.6(5)°, a smaller angle than in the tetramethylguanidium salt (60.5(2)°). The aldehyde hydrogen is directed towards the carboxylate carbon with a H⋯CO2− separation of 2.42(2) Å, and distances of 2.76(2) and 2.60(2) Å to the two oxygen atoms. The smaller angle between the functional group planes means that there is also a rather long contact from a carboxylate oxygen to the aldehyde carbon (O(2)⋯CHO: 2.920(3) Å) with a O(2)⋯C
O angle of 119.77(19)°. The structures of the anion in the salts with tetramethylguanidine and DMAP are compared in Fig. 12 along with those for the potassium and triphenylguanidinium salts. The greater angle between the functional group planes in the tetramethylguanidium salt means that the H⋯CO2− contact is shorter (2.29(2) Å), and the O⋯CHO contact longer (3.043(2) Å). There are no similar short contacts between an aldehyde and the carbon of a carboxylate group reported in the Cambridge Structural Database (2015 release). In the structures of the two reported salts of the 2-formylbenzoate anion the main interaction between the functional groups is an intramolecular H⋯O contact (2.26 and 2.47 Å) between the aldehyde hydrogen and a carboxylate oxygen.21 Furthermore, there are short intramolecular H⋯O contacts between aldehyde groups in benzene-1,2-dicarbaldehyde 16 and naphthalene-2,3-dicarbaldehyde 17 (2.30–2.36 Å), but in benzene-1,3-dicarbaldehyde the intermolecular H⋯O contacts involving aldehyde groups are longer (2.64–2.66 Å).22 Two similar contacts with an ester carbonyl oxygen (2.43 Å) have been reported.23 The aldehyde group is known to make short contacts from the hydrogen atom to an ether oxygen of ca. 2.3 Å, for example in 18–19 (Scheme 4).24
O contact gets longer, and the H⋯CO2− contact gets shorter. These interaction modes will be studied further using cations which make the minimal interaction with the anion, and the interactions investigated in more detail by conducting charge density measurements.
O), 134.5, 133.0, 130.9 130.0, 129.1, 128.1, 127.7, 127.2, 126.1, 121.3 (Ar–C10), 97.1 (CHOH); δH (400 MHz, CD3OD, 24 °C): 8.32 (1H, d, J = 7.3 Hz, Ar–H1), 8.19 (1H, d, J = 8.7 Hz, Ar–H1), 7.98 (1H, d, J = 7.8 Hz, Ar–H1), 7.63–7.68 (3H, m, Ar–H3), 7.16 (1H, s, OH), 6.81 (1H, s, CHOH); δc (100.6 MHz, CD3OD, 24 °C): 165.9 (C
O), 135.2, 133.4, 130.8 130.5, 129.5, 128.4, 128.0, 127.4, 126.5, 120.9 (Ar–C10), 99.0 (CHOH); νmax: 3274, 1675, 1590, 1587, 1517, 1407, 1377, 1356, 1305, 1264, 1249, 1181, 1113, 992, 922, 771, 740, 687, 655 cm−1. Data are consistent with cyclic structure 15.
O), 155.0 (4-C, DMAP), 150.1 (2-,6-C, DMAP), 134.4, 133.0, 131.0 129.8, 129.1, 128.1, 127.7, 127.2, 126.1, 121.3 (Ar–C10), 107.4 (3-,5-C, DMAP), 97.2 (CHOH); corresponds to 2
:
1 mixture of naphthaldehydic acid and DMAP; νmax: 1713, 1681, 1646 (N–H, DMAPH), 1559, 1537, 1534, 1516, 1506, 1443, 1431, 1394, 1374, 1347, 1336, 1316, 1258, 1243, 1214, 1175, 1092, 1077, 1067, 989, 955, 927, 841, 826, 810, 774, 758, 743, 732, 683, 654 cm−1; found C: 71.35, H: 4.87, N: 5.48%. C31H26O3CN2O6 requires C: 71.25, H: 5.02, N: 5.36%.
O), 8.10 (1H, dd, J = 8.0, 1.2 Hz, Ar–H1), 7.68–7.99 (2H, m, Ar–H2), 7.88 (1H, dd, J = 7.3, 1.4 Hz, Ar–H1), 7.54–7.59 (2H, m, Ar–H2), 5.08 (2H, br, –NH2), 2.87 (12H, s, 2 × N(CH3)2); δC (100.5 MHz, CD3OD, 24 °C): 189.9 (HC
O) 177.2 (CO2−), 161.8 (N2C
N), 137.3, 134.5, 134.3, 133.9, 129.5, 128.0, 127.8, 127.3, 125.7, 124.9 (Ar–C10), 39.8 (2 × N–(CH3)2); νmax: 2935 br, 1675, 1567, 1504, 1471, 1454, 1428, 1406, 1376, 1358, 1333, 1257, 1239, 1206, 1099, 1086, 1059, 1036, 954, 880, 833, 822, 802, 770, 753, 719, 681 cm−1.
:
57 mixture of two twin components with twin matrix [1 0 0.44 0 −1 0 0 0 −1] (2-fold axis rotation about [1 0 0] reciprocal lattice direction).
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 1435389–1435396. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c5ce02282g |
| This journal is © The Royal Society of Chemistry 2016 |