Ilaria E.
Palamà
*a,
Francesca
Di Maria
bc,
Stefania
D'Amone
a,
Giovanna
Barbarella
cd and
Giuseppe
Gigli
abe
aInstitute Nanoscience CNR (NNL, CNR-NANO), via Arnesano, Lecce, Italy. E-mail: ilariaelena.palama@nano.cnr.it
bDept. Matematica e Fisica ‘Ennio De Giorgi’, University of Salento, via Monteroni, Italy
cConsiglio Nazionale Ricerche (CNR-ISOF), Via P. Gobetti 101, Bologna, Italy
dMediteknology srl, Via P. Gobetti 101, Bologna, Italy
eItalian Institute of Technology (IIT) – Center for Biomolecular Nanotechnologies, via Barsanti, Arnesano, Italy
First published on 22nd October 2014
Live cells can form multifunctional and environmentally responsive multiscale assemblies of living and non-living components. We recently reported the results of a unique approach to introduce supplementary properties, fluorescence in particular, into fibrillar proteins produced by live fibroblasts and extruded into the ECM. In this work, we demonstrate that the physiological secretion of fluorescent nanostructured microfibers upon the spontaneous uptake of the appropriate fluorophore extends to living cells derived by different tissue contexts. We also show that live cells seeded on fluorescent microfibers have a different fate in terms of the cellular morphology, cytoskeleton rearrangement and viability. These results suggest that the microfibers, which are biocompatible and biodegradable, can be used as multiscale biomaterials to direct the cell behaviour.
An emerging class of probes for biochemical imaging is that of thiophene oligomers and polymers. K. P. R. Nilsson et al. reported that a charged quinquethiophene can mark amyloid fibers8in vitro and in vivo and can also discriminate between various types of cells.9 Recently, we reported that some cell-permeant and biocompatible thiophene fluorophores have the capability to spontaneously cross the cell membrane without the need for any type of vector and selectively recognize specific proteins inside living cells.10–12 In particular, the green fluorescent thiophene fluorophore DTTO – namely 3,5-dimethyl-2,3′-bis(phenyl) dithieno[3,2-b;2′,3′-d]thiophene-4,4-dioxide (Fig. 1) – can spontaneously cross the membrane of live embryonic fibroblasts (3T3), be specifically recognized by the hydroxyproline component of protocollagen polypeptide chains and be incorporated via nonbonding interactions during the self-assembly of protocollagen into triple helices. The process leads to the secretion of helical fluorescent microfibres subsequently extruded into the extracellular matrix.11 DTTO is a semiconducting molecule, and collagen–DTTO microfibers are also electroactive.12
Here, we report the capability of DTTO to spontaneously cross the membrane of live cells, be recognized by specific proteins and physiologically form fluorescent protein(s)–DTTO microfibers extending to mouse neuroblastoma cells (B104). The interest in testing the B104 cells line is that these cells do not produce collagen, thus the protein(s) targeted by DTTO must be of a different nature. We show that QTOF analysis of the fluorescent microfibers isolated from the cell context indicates that the fluorescent microfibers are mainly made of vimentin,13 a fibrillar protein that is overexpressed in various types of cancers,14 as well as in the Alzheimer's disease,15 and that it is likely to play an important role in cancer cell invasion.16 In view of their potential use as innovative biomaterials, we tested the fluorescent collagen–DTTO microfibers produced by fibroblasts and vimentin–DTTO microfibers produced by neuroblastoma cells as substrates, on which live 3T3 fibroblasts, C2Cl2 myoblasts and B104 neuroblastoma cells, were seeded. We show that the protein–DTTO microfibers have significantly different effects on the cells in terms of the cellular morphology, cytoskeleton rearrangement and viability. These effects span from cell death to microfibers fragmentation into pieces by the cells and subsequent internalization without adverse effects on the cell viability. These results suggest that the physiologically produced protein(s)–DTTO microfibers can be used to direct cell behaviour and be active delivery systems for various bioagents and be used in tissue engineering applications.
000 cells on a tissue culture plate in 1 mL of complete culture medium. DTTO dye was dissolved in the minimum amount of DMSO to obtain a stock solution and was then administered to the cells by adding the appropriate dilution in serum free DMEM to obtain the final concentration of 0.05 mg mL−1 and incubated at 37 °C in 5% CO2, 95% relative humidity for 1 h. At the end of the incubation period, the unbound dye was removed, and the cell cultures were washed with serum free DMEM medium. The samples were examined after 1, 24, 48, 72 hours and 7 days upon treatment with DTTO by laser scanning confocal microscopy (LSCM). Confocal micrographs were taken using a Leica confocal scanning system mounted into a Leica TCS SP5 (Leica Microsystem GmbH, Mannheim, Germany), equipped with a 63× oil immersion objective and spatial resolution of approximately 200 nm in x–y and 100 nm in z.
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1) were separated on SDS-polyacrylamide gels without prior heating. The resolved protein bands were visualized by Coomassie staining (Sigma Chemical Co., St. Louis, MO, USA), according to the manufacturer's instructions.
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50 w/w) at 37 °C overnight. The samples were then acidified with 1 μl 5% formic acid (FA) solution and dried in a vacuum evaporator. Trypsinized microfibers were resuspended in 30 μl of a 1% FA/acetonitrile 98
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2 solution. Chromatographic separation was performed on a high capacity loading chip, with a 150 mm, 300 Å, C18 column prior to a desalting step through a 160 nL trap column. The injected sample (2 μl, 0.8 μg) was loaded on the trap column with a 4 μl min−1 0.1% FA
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ACN 98
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2 phase; after 3 min, the pre-column was switched in-line with the nanoflow (400 nL min−1, phase A: water
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ACN
:
FA 97
:
3
:
0.1, phase B: ACN
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water
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FA 97
:
3
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0.1), equilibrated in 3% B. The peptides were eluted from the RP column through the following gradient: 3–45% B over a period of 35 minutes, 45–90% in 7 min, 90% B hold for 5 min, and back to 3% B in 3 min – a total of 60 min of runtime, including a 10 min post-run reconditioning step.
Mass spectrometry was performed by ESI-Q-TOF Accurate-Mass G6520AA (Agilent Technologies), controlled by MassHunter (v. B.02.00) and interfaced by a CHIP-cube to an Agilent 1200 nanopump. Centroided MS scan spectra were acquired in positive mode in the range of 300–1700 Da with a 6 Hz sampling rate; top 5 ions, preferring +2 and +3 species, were selected for MS/MS analysis, setting an active exclusion of the same precursor after 1 spectrum over 0.15 minutes. Tandem mass spectra (N2 CID cell) were recorded in the mass range 50–1700 Da with a sampling rate of 3 Hz. Collision energy was calculated using the following expression: [3.6(m/z/100) − 3] V. Automatic QToF calibration was performed before each run. MassHunter (B02.00, from Agilent Technologies) produced mzData.xml raw data that was searched against the SwissProt (v. 57.15) database using an in-house Mascot Server (v. 2.3, Matrix Science, UK) with the following settings: 30 ppm parent ion tolerance, 0.15 Da fragment ion tolerance, semi-tryptic cleavage with one allowed missed cleavage, carbamidomethyl-cysteine as fixed modification and oxidised methionine, lysine and N-terminus carbamylation as the variable modifications, narrowing the search to a rodent proteome. A forward-decoy concatenated protein sequence database was used to evaluate the search false discovery rate.
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150, Sigma-Aldrich, USA) in PBS buffer at 37 °C for 1 hour. The primary antibody was revealed using the TRITC conjugated anti-mouse antibody (1
:
1000, Millipore, USA) as a secondary antibody and mounting with fluoroshield (Sigma-Aldrich, USA). Confocal micrographs were taken with a Leica confocal scanning system mounted into a Leica TCS SP5 (Leica Microsystem GmbH, Mannheim, Germany), equipped with a 63× oil immersion objective and spatial resolution of approximately 200 nm in x–y and 100 nm in z. 3D confocal scanning was performed by reconstructing the photoluminescence emitted from different focalized slices with a sequential image acquisition. The optical sections were collected in transverse x–z and y–z planes.
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1 mixture of H2SO4 and H2O2, rinsed sequentially with deionized water, ethanol and acetone, and finally dried with nitrogen. 1 mg mL−1 of isolated fluorescent microfibers (Collagen I hybrid microfibers11,12 and vimentin hybrid microfibers) were deposited on the cover slip glass and dried overnight. All the substrates were sterilized for 15 min using UV light before seeding the cells.
Mouse myoblasts (C2C12), mouse neuroblastoma cells (B104) and mouse embryonic fibroblasts (3T3) were seeded on microfibers at 100
000 cell per mL (approximately 1000 cells permm2 of substrate). After 48 hours, each specimen was rinsed twice with PBS 1× to remove any unattached cells. Cytoskeleton morphology was investigated by phalloidin–TRITC at a final concentration of 1 mg mL−1 (Sigma-Aldrich) labeling. The cells were fixed in situ for 5 min in 3.7% formaldehyde, permeabilized with 1% Triton X-100 in PBS 1×, and washed again in PBS 1×.
Thereafter, filamentous actin was stained with phalloidin–TRITC for 40 min at room temperature. Subsequently, the cells were washed several times with PBS to remove the unbound phalloidin conjugate. The samples were examined using a Leica confocal scanning system mounted on a Leica TCS SP5 (Leica Microsystem GmbH, Mannheim, Germany) and equipped with a 63× oil immersion objective.
000 cells per mL) were added to the well culture plates at 1 mL per well and incubated at 37 °C in 5% CO2, 95% relative humidity for 24–48–72 and 192 hours with the DTTO dye suspension. The control was entirely culture medium. After the appropriate incubation period, the cultures were removed from the incubator and a MTT solution was added in amounts equalling 10% of the culture volume. The cultures were then returned to the incubator and incubated for 3 hours. After the incubation period, the cultures were removed from the incubator and the resulting MTT formazan crystals were dissolved in an acidified isopropanol solution to an equal culture volume. The plates were read within 1 hour after adding an acidified isopropanol solution. The absorbance was spectrophotometrically measured at a wavelength of 570 nm and the background absorbance measured at 690 nm was subtracted. The percentage viability is expressed as the relative growth rate (RGR) by following equation:| RGR = (Dsample/Dcontrol) × 100% |
The fluorescent microfibers formed after 7 days from the treatment of the cells with DTTO were separated from the cell lysate, picked up by LSCM and analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The results are shown in Fig. 2. SDS-PAGE unambiguously indicated the proteic nature of the fluorescent fibrils. Only one single signal was observed in the region around a 60 kDa molecular weight.
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| Fig. 2 SDS-PAGE of the fluorescent microfibers isolated by the live mouse neuroblastoma cells after 192 hours of treatment with DTTO (A = high molecular weight marker, B = sample). | ||
In agreement with the mass spectrometry data, co-localization experiments of isolated fluorescent microfibers with the monoclonal vimentin antibody showed that there was in fact co-localization between the antibody and the microfibers. Fig. 3 shows LSCM images of isolated green fluorescent microfibers (a), isolated red fluorescent anti-vimentin antibody (b), merged images (c) and corresponding z-stack sections (d) with a z-resolution of 200 nm. Fig. 3D shows that there is spatial co-localization with the red fluorescent anti-vimentin antibody inside the green fluorescent microfibers (supplementary attached file denominated ‘LCSM_zeta stack sections of vimentin co-localization’).
Fig. 4 shows AFM images of the fluorescent microfibers isolated from the cell lysate. The morphology of the largest fibers recalls the structure of the dimer of vimentin representing the first level of vimentin self-assembly.22–26 The figure also displays the coiled coil arrangement of two smaller microfibers. Fig. S2† shows another fluorescent microfiber isolated from the cell lysate and provides evidence of the lateral growth of the microfibers.
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| Fig. 4 (A) AFM image of the fluorescent microfibers isolated from the cellular milieu. The morphology of the largest fiber recalls the structure of the dimer of vimentin representing the first level of the vimentin self-assembly.22 (B) Magnification of Figure A. The arrows indicate the coiled coil arrangement of two smaller microfibers. | ||
Vimentin is a polypeptide comprising 466 amino acids with a highly conserved α-helical ‘rod’ domain that is flanked by non-α-helical N-and C-terminal end domains, the ‘head’ domain and ‘tail’ domain, respectively.13 The self-organization of these molecules leads to the formation of coiled coils, which are the basic structural building blocks for the entire IF family of proteins. Vimentin is also known to form homopolymers and heteropolymers (i.e., it associates with other type III and type IV IFs), which is a common feature among the members of the IF family ascribed to the presence of a coiled-coil α-helical domain. Highly stable polymers are formed, the stability of which is controlled by the phosphorylation status of the integral proteins. The astonishing similarity between the sophisticated shape of the fluorescent microfiber analyzed by AFM in Fig. 4 and the shape of human vimentin dimer, as determined based on X-ray diffraction at the atomic scale (Fig. 4C of ref. 26), is unlikely to be the outcome of mere coincidence. The fact that the cell viability remains unaltered upon DTTO uptake (Fig. S3†) suggests that the fluorescent dye is progressively embedded during protein growth without substantially altering the self-assembly process. DTTO is a small neutral molecule that can be accommodated easily within the alpha helical collagen strand of fibroblasts of different origin via hydrogen bonds, leading to the stabilization of the helical structure.11,12 All IF proteins, including vimentin, although varying greatly in their primary structure, are characterized by an alpha-helical central rod domain having the intrinsic capability to form coiled-coil filaments and are terminated by the non-helical N- and C-domains of variable size, which play a role in the protein self-assembly process. Therefore, the α-helical structure present in vimentin and its ability to form non-covalent bonds with DTTO via non-bonding interactions cannot alone justify the fact that it is mainly vimentin that is concerned by DTTO in live neuroblastoma cells. It is more probable that the choice is determined by some co-factors related to the general ‘economy’ of the cell and its metabolism.
As shown in Fig. 5, the cells seeded on collagen–DTTO or vimentin–DTTO microfibers assumed different morphologies and configurations depending on the stimuli experimented.
After seeding on collagen–DTTO microfibers for 48 hours, C2C12 myoblasts and B104 neuroblastoma cells (Fig. 5Ae and Ag) showed cytoskeleton remodeling, with a remarkable organization of F-actin into the intricate branching networks and polarized filopodia protrusions associated to a more elongated shape, whereas 3T3 fibroblasts (Fig. 5Af) assumed a spindle-shaped appearance displaying a round and contracted cell body. Conversely, when seeded for 48 hours on vimentin–DTTO microfibers, 3T3 fibroblasts (Fig. 5Bf) and B104 neuroblastoma cells (Fig. 5Bg) maintained their epithelial morphology of a polygonal shape with many actin cytoplasmic protrusions (filopodia-like processes), whereas C2C12 myoblasts showed a contracted cell body. As shown in the figure, after 48 h of cell culture, the collagen–DTTO and vimentin–DTTO microfibers appeared as green fluorescent dots, with a uniform distribution inside the cytoplasm of C2C12 myoblasts (Fig. 5Ab and Bb) and 3T3 fibroblasts (Fig. 5Ac and Bc). In this case, it can be suggested that both types of microfibers were degraded by the cell,27,28 conceivably by action of the matrix metalloproteases modifying in this way the microenvironment and resulting in an alteration of the cellular morphology and cytoskeleton rearrangement. On the contrary, in B104 neuroblastoma cells, collagen–DTTO microfibers were partially degraded, as evident in Fig. 5Ad, whereas the vimentin–DTTO microfibers showed their native morphology (Fig. 5Bd). The degradation and possible recycling of the microfibers can be a process used to create the protein fragments required to build new cellular structures.
We also evaluated the viability of C2C12 myoblasts, 3T3 fibroblasts and B104 neuroblastoma cells cultured on glass cover slips coated with collagen–DTTO or vimentin–DTTO microfibers by performing a MTT proliferation assay at 24, 48, 72, and 192 h. As shown in Fig. 6, the substrates coated with vimentin microfibers did not affect the cell viability or proliferation, as judged by the increases in the total cell numbers over time. The same was true for the myoblasts and neuroblastoma cells coated on the collagen–DTTO microfibers. On the contrary, the viability of 3T3 fibroblasts was compromised when the cells were seeded on collagen–DTTO microfibers. As evident in Fig. 5, all microfibers (1 mg mL−1) present on the substrate were degraded and internalized by fibroblasts after 48 h. These results indicate that the massive storage of collagen–DTTO fragments inside fibroblasts leads to apoptosis. This does not exclude the fact that collagen–DTTO microfibers having concentrations below 1 mg mL−1 might not induce cytotoxic effects on the fibroblasts.
Further experiments are in progress to elucidate the biochemical mechanisms involved in the degradation of the fluorescent microfibers and to obtain information on how their mechanical and electrical characteristics direct the cellular behaviour.
The composition and distribution of the specific extracellular matrix components vary with the type of tissue, and can also be altered by the tissue's development stages and/or pathological state. The cells sourced from different tissues typically yield matrices that mimic the relative composition of the natural tissue matrix. In this work, we demonstrate that the cell source is the primary determinant of the resulting multiscale hybrid microfibers. In particular, we used live neuroblastoma cells that produce hybrid vimentin microfibers upon the uptake of DTTO. The different compositions induce dissimilar cellular behaviour when these multiscale microfibers are used as substrates for cell cultures.
The requirements for materials used in biomedical applications are biocompatibility and biodegradability. The fluorescent microfibers physiologically secreted by the live cells described here present both characteristics. These microfibers represent innovative multiscale biomaterials useful not only for the imaging of cellular processes but also potentially for drug delivery and tissue engineering as well as to confer bioactivity to synthetic scaffolds by the loading of bioactive molecules as growth factors.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: 10.1039/c4tb01562b |
| This journal is © The Royal Society of Chemistry 2015 |