Višnja Vrdoljak*a,
Gordana Pavlovićb,
Tomica Hrenara,
Mirta Rubčića,
Patrizia Siegac,
Renata Dreosc and
Marina Cindrića
aUniversity of Zagreb, Faculty of Science, Department of Chemistry, Horvatovac, 102a, 10000 Zagreb, Croatia. E-mail: visnja.vrdoljak@chem.pmf.hr; Fax: +385-1-4606341; Tel: +385-1-4606353
bUniversity of Zagreb, Faculty of Textile Technology, Division of Applied Chemistry, Prilaz baruna Filipovića 28a, 10000 Zagreb, Croatia
cDepartment of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127, Trieste, Italy
First published on 1st December 2015
Cobalt(III) complexes of the type [Co(HL)(L)] were synthesized under solvothermal conditions staring from [Co(C5H7O2)3] and the corresponding ligand H2L (salicylaldehyde 4-hydroxybenzhydrazone, 3-methoxysalicylaldehyde 4-hydroxybenzhydrazone, 4-methoxysalicylaldehyde 4-hydroxybenzhydrazone, salicylaldehyde benzhydrazone, 3-methoxysalicylaldehyde benzhydrazone, 4-methoxysalicylaldehyde benzhydrazone). The presence of differently protonated forms of the same ligand in the complexes was supported by IR and NMR spectroscopy as well as by the single crystal X-ray diffraction method. The effects of weak interactions on the supramolecular architecture and their role on the ligand form stabilization have been analysed. Molecular interactions within the unit cells were investigated and quantified by extensive quantum chemical analysis on models built from crystal structures using density functional theory and empirical dispersion. Ligands used in this study were prepared under environmentally friendly conditions by mechanochemical synthesis. Their thermal behaviour and phase transitions were investigated using TG and DSC analysis and the powder X-ray diffraction method.
Metal complexes with aroylhydrazone ligands ArCN–NH–(C
O)–R are usually mononuclear or dinuclear. Some examples of structurally characterized complexes are [Sn(L)(Ph)2]·EtOH,23 [Cd(HL)2],24 [Cu2(L)2(py)2],25 [Cu2(HL)2(H2O)2](NO3)2,26 [Co(HL)2]ClO4·H2O·CH3CN,27 [Co(L)2]2[Co(H2O)4(OPPh3)2],28 [Co(L)2]Cl,29 [Co(L)2]·H2O,30 or [Co(L)(HL)2](NO3)2·H2O·CH3OH.31 In these compounds, the hydrazone ligand is in the singly-deprotonated HL−, or in doubly-deprotonated L2− form, Scheme 1. The protonation state of these ligands in metal complexes plays an important role since it offers fine-tuning of properties such as electrochemical, photophysical or catalytic.32–34
Although numerous transition metal complexes with aroylhydrazone derivatives are known, related cobalt(III) complexes are rare. Only seven such structures have been published to date.27–39 In addition, complexes based on differently deprotonated ligand are even more scarce. The structures of the complexes [Fe{H(3,5-tBu2)salbh}{(3,5-tBu2)salbh}],40 and [Fe(L)(HL)],41 containing the 3,5-di-tert-butylsalicylidene benzoylhydrazine, or N-(2-oxo-3-methoxybenzilidene)-benzohydrazide, respectively, represent such examples.
Inspired by the previously mentioned facts in this work we were interested to investigate mononuclear cobalt(III) complexes which bear tridentate ONO hydrazone ligands in different protonation states. Such complexes can be formulated as [Co(HL)(L)], where HL denotes singly deprotonated ligand and L doubly deprotonated one. In this comprehensive study we employed X-ray crystallography, IR and NMR spectroscopy as well as quantum chemical calculations to analyze: (i) structural and electronic changes of the hydrazone moiety depending on the protonation state of ligand; (ii) importance of nonbonding interactions in the stabilization of particular ligand form and (iii) potential role of N–H⋯O/N or O–H⋯O/N hydrogen bonds in the overall stabilization of the crystal structure.
As a part of this study we also aimed to investigate synthesis of aroylhydrazone ligands under more environmentally friendly conditions. For this purpose we employed mechanochemical synthesis which has been extensively investigated lately as a “green” synthetic route.42,43 It has been applied to various organic reactions, including condensation reactions, nucleophilic additions, Diels–Alder reactions, etc.44 The first synthesis of hydrazones using ball-milling method was reported by Kaupp and coworkers.45,46 Baltas et al. recently reported solvent-free mechanochemical route for pharmaceutically attractive phenol hydrazones using a vibratory ball mill with an average reaction time of four hours.47
Ligand | Aldehydea | Hydrazideb | Milling time/min |
---|---|---|---|
a Sal (salicylaldehyde), 3-OMe-Sal (3-methoxysalicylaldehyde), 4-OMe-Sal (4–methoxysalicylaldehyde).b HBOH (4-hydroxybenzhydrazide), HB (benzhydrazide). | |||
H2L1 | Sal | HBOH | 40 |
H2L2·H2O | 3-OMe-Sal | HBOH | 20 |
H2L3·H2O | 4-OMe-Sal | HBOH | 60 |
H2L4 | Sal | HB | 30 |
H2L5·H2O | 3-OMe-Sal | HB | 30 |
H2L6·H2O | 4-OMe-Sal | HB | 60 |
Compounds H2L1 and H2L4 were found to be unsolvated, whereas H2L2·H2O, H2L3·H2O, H2L5·H2O and H2L6·H2O were obtained in their hydrated forms. They were analyzed by PXRD (Fig. 1) thermogravimetric (TG) and differential scanning calorimetric measurements (DSC, see ESI Fig. S1–S6†). PXRD patterns for prepared hydrazones were compared to those calculated from the previously reported single crystal X-ray crystallography studies, Fig. 1 ((a) H2L1, CSD code YIFPAF01;48 (b) H2L2·H2O, CSD code ROGFEZ;49 (c) H2L3·H2O, CSD code MOKRUA;50 (d) H2L4, CSD code ZAYQAR;51 (e) H2L5·H2O, CSD code TEZMER52 and (f) H2L6·H2O, CSD code MIQXUH).53 The appearance of experimental diffraction patterns is consistent with those simulated for all compounds.
Their thermal behaviour and phase transitions were investigated using TG and DSC analysis and the powder X-ray diffraction method. The first mass loss in the TG curves of H2L2·H2O, H2L3·H2O, H2L5·H2O and H2L6·H2O was related to the water molecule release (6.1%, 5.0%, 6.7% and 6.0%, respectively). The dehydration process was observed as a broad endothermic peak in DSC thermograms. Afterward, an exothermic peak appeared in thermograms of H2L3 and H2L5 (Fig. S3 and S5†) suggesting a solid-to-solid phase transformation (see ESI Fig. S7 and S8†). On the other hand, in the case of H2L2·H2O and H2L6·H2O an exothermic peak during the heating process was not observed (Fig. S2 and S6†). To inspect in detail, samples were heated from the ambient temperature at various heating rates (2, 10, 20 and 50 °C min−1). Again, no peaks were observed up to the temperature associated with melting endotherm. As seen form PXRD patterns the absence of the solvent molecule in H2L2 induced certain shifts in the peak position whereas in case of H2L6 the unsolvated compound showed a diffractogram significantly different from that of H2L6·H2O (see ESI Fig. S9 and S10†). Additionally, the resulting materials obtained by the solid state desolvation of H2L5·H2O and H2L6·H2O exhibited PXRD patterns consistent with those simulated from the single-crystal data for the anhydrous H2L5 and H2L6, respectively (Fig. S8 and S10†).
The melting endotherms of the anhydrous hydrazones are very sharp, occurring over a narrow temperature interval thus indicating purity of the compounds. From DSC measurements it follows that the melting points for H2L1−6 were 268 °C (ΔfusH = 37 kJ mol−1), 194 °C (ΔfusH = 25 kJ mol−1), 229 °C (ΔfusH = 31 kJ mol−1), 179 °C (ΔfusH = 22 kJ mol−1), 191 °C (ΔfusH = 32 kJ mol−1) and 181 °C (ΔfusH = 25 kJ mol−1), respectively.
In all compounds formed after chelation, the ligands were found to exist in differently deprotonated forms (Scheme 3). The protonation state and formation of [Co(HL)(L)] was supported by IR and NMR spectroscopy as well as by the single crystal X-ray diffraction method.
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Scheme 3 The structural formula of [Co(HL)(L)] complex (showing hydrazonato HL− form and hydrazidato L2− form). |
H2L3 molecules adopt a syn-configuration, when taking into consideration relative position of O1 and O2 oxygen atoms (Fig. 2a). The 4-methoxysalicylidene residue and the central hydrazone linkage, N–NH–(C
O)–, are essentially coplanar, while the terminal 4-hydroxybenzene ring is twisted in such a way to form a dihedral angle of 39.94(6)° with respect to the plane of the aldehyde ring. Crystal structure of H2L3 unveils a complex hydrogen bonding network formed by two types of intersecting hydrogen-bonded chains (see ESI, Fig. S12†). The first type corresponds to infinite zig-zag hydrogen-bonded C(8) chains that grow parallel to b-axis and are realized through O3–H3O⋯O1 hydrogen bonds. As each molecule additionally associates with the neighbouring ones via N2–H2N⋯O2 hydrogen bonds, it leads to formation of the second type of hydrogen-bonded chain, C(7) one, which runs along the c-axis. Supramolecular assembly formed in such a way is further stabilized and extended into a three-dimensional network through C–H⋯O interactions (Fig. S12†).
As opposed to molecules of H2L3, those of H2L5 assume an anti-configuration when considering the position of O1 and O2 atoms (Fig. 2b). While the inner hydrazone portion and the aldehyde part of the molecule remain planar, the terminal benzene ring is tilted 62.30(8)° away from this plane. The adopted anti-configuration with favourable alignment of hydrogen bond donors and acceptors allows formation of centrosymmetric hydrogen-bonded dimers, displaying a R22(8) motif which is accomplished through N2–H2N⋯O1 hydrogen bonds (see ESI, Fig. S13†). The dimers associate via C7–H7⋯O2 interactions into endless chains which run along the b-axis. Such chains are joined into layers via C5–H5⋯O3 interactions, which are finally stacked through van der Waals interactions (Fig. S13†).
4-Methoxysalicylaldehyde benzhydrazone (H2L6) crystallizes in the space group Pc with two molecules per asymmetric unit. As can be seen from Fig. 3 the two molecules differ substantially in the orientation of the methoxy moiety on the position four of the salicylaldehyde ring. Moreover, there is an apparent difference in the conformation of the molecules (Fig. 3), while both of them adopt a syn-configuration when referring to O1 and O2 atoms. In the crystal, molecules connect via N–H⋯O hydrogen bonds, each independent molecule with its own kind, thus forming hydrogen-bonded C(4) chains which spread along the c-axis. Such chains are stabilized and mutually connected through C–H⋯O interactions (see ESI, Fig. S14†).
The Co–O(phenolate) bonds values amount 1.879(2) Å and 1.899(2) Å for Co1–O12 and Co1–O22 bonds, respectively, and the Co–O cobalt-to-(hydrazonato) oxygen atoms bond distance values amount: Co1–O11 1.928(2) Å and Co1–O21 1.884(2) Å. One ligand acts in a hydrazonato HL− form, while the other is in the hydrazidato L2− form (at O12 in the first ligand, and O22 and O21 in the second one). Since the ligand molecule labelled as first one is in the singly-deprotonated form, the trend that Co1–O11 bond distance (1.928(2) Å) is longer than Co1–O12 bond distance (1.879(2) Å) in the same ligand is expected.
On the other hand, comparing bond distances within the coordination sphere, the O21 atom of the doubly deprotonated ligand (Co1–O21 bond distance of 1.884(2) Å within the five-membered chelate ring fragment) is found to be more tightly bound to the Co(III) ion than the O11 atom of the singly-deprotonated ligand (Co1–O11 1.928(2) Å). The similar trend one can observe for Co1–N11 1.880(2) Å and Co1–N21 1.867(2) Å bonds exhibiting stronger bond with the nitrogen atom of the doubly-deprotonated hydrazonato ligand enhanced by more pronounced delocalization.
The coexistence of both forms within a complex is evidenced by the bond distances values (see ESI Table S3a†) in the region of five-membered chelate ring which is in agreement with the position of the electron density maximum corresponding to the H12N hydrogen atom of the hydrazone NH group. Therefore, the keto C11–O11 bond distance values amounts 1.278(3) Å, on the contrary to the value of 1.309(3) Å for the O21–C21 bond distance value. The N12–C11 bond distance of 1.333(4) Å is more σ in character opposite from N22–C21 which is shortened to the value of 1.315(4) Å.
The proton of the hydroxyl O23–H23O is bifurcated between two proton acceptors; one is phenolate oxygen O12 atom and the other is methoxy O14 atom, Fig. 5. The supramolecular centrosymmetrical ring is formed via O23–H23O⋯O12 intermolecular hydrogen bond between hydroxyl group and phenolate O12 donor atom (see ESI Fig. S16, Table S4†). The O13–H13O⋯N22 intermolecular hydrogen bond of 2.734(4) Å between hydroxyl O13–H13O group and the non-donor nitrogen atom N22 forms another supramolecular hydrogen bonded ring which alternates within crystal structure of 2 with the former (Fig. 5, Table S4†). Bifurcation of the N12–H12N proton-donor group in 2 between two proton acceptors: the phenolate O22 atom and the methoxy O24 atom are shown in Fig. 6. Therefore, two intermolecular hydrogen bonds are formed: N12–H12N⋯O22 and N12–H12N⋯O24 (Table S4†). The formation of 3D hydrogen bonded network including all above mentioned types of hydrogen bonds is given in ESI, Fig. S17.†
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Fig. 5 The alternated assembling of two supramolecular hydrogen bonded rings via O13–H13O⋯N22 (ring A) and O23–H23O⋯O12 (ring B) intermolecular hydrogen bonds in the crystal structure of 2. |
In complex 1 each of the two ligands coordinate to Co(III) ion with the hydrazone oxygen (Co1–O1 1.892(2) Å), phenolate oxygen (Co1–O2 1.884(2) Å) and imine nitrogen donor atoms (Co1–N1 1.874(3) Å) being in axial positions, to form two chelate rings: six-membered with the O2 and N1 donor atoms and five-membered with the N1 and O1 donor atoms. The deformation from ideal octahedral geometry is manifested in trans octahedral bond angles values which amount 172.05(18) and 178.70(10)° and cis octahedral bond angles values which are in the range 83.68(11)–95.24(11)° (Table S3(b)†).
The structurally analogous complex 6 exhibits comparable geometrical parameters: (Co1–O1 1.921(2) Å, Co1–O2 1.886(2) Å and Co1–N1 1.876(2) Å) (Table S3(b)†). In the region of five-membered chelate ring, which is most dependent on the type of forms, HL− or L2−, the C1–O1 bond distance of 1.289(4) and 1.285(3) Å in 1 and 6·MeOH, respectively, and N2–C1 bond distance of 1.325(4) and 1.331(4) Å in 1 and 6·MeOH, respectively, are an average of the HL− and L2− five-membered chelate rings (Table S3b†).
In complex 1 the co-existence of two ligand forms, which differ in their protonation states, is maintained by the intermolecular hydrogen bond N2–H12N⋯N2 (Table S4†). The hydrogen bond distance value of 2.810(4) Å and bond angle value of 162(4)° (for the N2–H12N⋯N2 angle) are both within expected range values for N–H⋯N type of hydrogen bond. This hydrogen bond assembles complex molecules into infinite 1D chain along a axis (Fig. 7).
The H13O hydrogen atom of the hydroxyl group of 4-hydroxybenzhydrazone ligand is bifurcated thus forming two intermolecular hydrogen bonds with the phenolate O2 and imine N1 atoms (Table S4†) with the former bond being expectedly stronger and more linear. The O3–H13O⋯O2 intermolecular hydrogen bonds forms infinite 2D chains of fused rings spreading along b axis in a zig-zag manner (see ESI; Fig. S20†).
The crystal structure of 6·MeOH is dominated by the N–H⋯O type of intermolecular hydrogen bond (Table S4†). The other hydrogen bonds are of the C–H⋯O type and include all oxygen atoms O1, O2, O3 and O4 (see ESI; Fig. S21†).
According to the calculated values (Table 2) crystal structures of 1 and 2 were more stable than 1′ and 2′, respectively. The presence O–H⋯O and N–H⋯N hydrogen bonds in 1 was shown to be a stability factor in contrast to O–H⋯N and N–H⋯O hydrogen bonds in 1′ (Fig. 8). Likewise, the presence of O–H⋯N hydrogen bond and bifurcated hydrogen bond between N–H group of singly-deprotonated ligand and phenolate and methoxy oxygen atoms in 2 was shown to be more stable than N–H⋯N hydrogen bond and bifurcated hydrogen bond between the O–H group and phenolate and methoxy oxygen atoms in 2′, respectively (Fig. 9, Table 2).
Compound | ΔrG°/kJ mol−1 (relative to 1) | ΔrG°/kJ mol−1 (relative to 2) |
---|---|---|
1 (built from crystal structure) | 0.0 | — |
1′ (built from crystal structure of 2) | 190.41 | — |
2 (built from crystal structure) | — | 0.0 |
2′ (built from crystal structure of 1) | — | 145.82 |
Bond | 1 | 6·MeOH | HL− ligand in 2 | L2− ligand in 2 |
---|---|---|---|---|
N1–N2 | 1.403(4) | 1.405(3) | N11–N12 1.380(3) | N21–N22 1.385(4) |
N2–C1 | 1.325(4) | 1.331(4) | N12–C11 1.333(4) | N22–C21 1.315(4) |
C1–O1 | 1.289(4) | 1.285(3) | O11–C11 1.278(3) | O21–C21 1.309(3) |
Although, ligand skeleton is highly delocalized π system (particularly that which is doubly-deprotonated), it is apparent that O11–C11 bond distance in 2 reflects dominantly double character, while O21–C21 in 2 is dominantly σ in character. As opposed, the C1–O1 bond distances in 1 and 6·MeOH are intermediates between a carboxyl C–O single (1.31 Å) and CO double bond (1.21 Å). The shortest C
N bond distance value is expectedly found in the doubly-deprotonated form (N22–C21 1.315(4) Å in 2), while the analogous bond distance in the singly-deprotonated form (N12–C11 1.333(4) Å in 2) is in accordance with its more pronounced single-bond character.
The presence of both ligand forms HL− and L2− in 1 and 6·MeOH is stabilized via supramolecular assembling by means of the N2–H12N⋯N2 intermolecular hydrogen bond in 1 or N2–H12N⋯O4 in 6·MeOH with MeOH molecule. In both cases, 1D infinite chains are formed resulting in channels that spread in each space dimension of the crystal structure (Fig. 10).
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Fig. 10 Channels in the structure of 1 spreading in a-axis direction (similar is in b- and c-axis directions). |
This stabilization occurs in 2 in the way that the proton donor N12–H12N group of HL− ligand forms hydrogen bonded centrosymmetrical dimers with the methoxy oxygen atom of the adjacent complex molecule showing bifurcation by forming additional hydrogen bond with the phenolate oxygen atom. This additional bond is responsible for the interconnected structure with smaller number of channels (Fig. 11). The channels that are formed in the structure of 2 are suitable for accommodation of the methanol molecules (Fig. S15†).
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Fig. 11 Channels in the structure of 2 spreading in c-axis direction (there are no similar channels in other directions). |
Although, both complexes 2 and 6·MeOH contain –OCH3 group; in complex 6·MeOH it acts as proton acceptor in the formation of the C–H⋯O type of the hydrogen bond, and not in the formation of hydrogen bond with –NH group, like in 2. Thus, the supramolecular role of MeOH solvent molecule of crystallization in the stabilization of hydrogen bonding is evident considering its competition with –OCH3 group for hydrogen bond formation with the –NH group.
The 1H NMR spectra of 1 and 4 did not change with time. On the contrary, a second set of signals, corresponding to the free ligand, developed in the spectra of the other complexes. This second set increased with time, reaching after about 10 days an integrated intensity, relative to the signals of the starting complexes, of 3% and 6% for 2 and 5, respectively, and of 7% and 23% for 3 and 6. The above results suggest a different stability of the complexes in DMSO-d6 solution, the complexes with the H2L1,4 ligands being more stable than those with H2L2,5 and those with H2L3,6 being the least stable.
In order to investigate the acid–base behaviour of the complexes in solution, a 1H NMR titration was carried out on 1 and 5. The complexes dissolved in DMSO-d6 (about 5 × 10−3 mmol in 0.8 mL of solvent) were titrated in the NMR tube with a 0.5 M solution of NaOH dissolved in D2O. The chemical shift changes relative to the starting complex (Δδ) were plotted at different [NaOH]/[complex] ratios. For 5, all the resonances are shifted upfield up to the addition of about a 1:
1 amount of NaOH (see ESI, Fig. S28(a)†), whereas successive additions do not cause a further shift, indicating that the complex behaves as a monoprotic acid. A parallel experiment carried out on 1 (see ESI, Fig. S28(b)†) shows a similar behavior for additions up to 1
:
1, but the signals keep moving upfield for further additions of NaOH (up to about a 3
:
1 ratio). This second acid–base process affects mainly the resonances of the protons closer to C5–OH, indicating that the deprotonation occurs at the phenolic protons.
It is worth of noting that, for [NaOH]/[complex] ratios ranging from about 1 to about 3, the upfield shift is associated with a severe broadening of the signals at 6.75 ppm (C4–H and C6–H) and 7.74 ppm (C3–H and C7–H), which become sharp again with time (Fig. 12, see ESI, Fig S29†). In this pH range, the complex reacts to give the double and triple deprotonated species: a fast deprotonation followed by a relatively slow equilibration between the species may explain the evolution of the signals with time. Reaction profile obtained by principal component analysis is presented on Fig. 13.
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Fig. 13 PC1 scores obtained by principal component analysis of NMR spectra presented on Fig. 12 in dependence of time. |
In the IR spectra of the ligands vibration bands belonging to CNimine and C–Ophenolic groups are found at ca. 1630 and 1355 cm−1, respectively. In the case of HL− ligand these bands are shifted to 1614–1606 cm−1 and 1386–1380 cm−1. For L2− ligand they are found at lower wavenumbers (in the range 1607–1598 cm−1 and 1285–1241 cm−1). This finding clearly indicates coordination of the ligands to the metal centre through the nitrogen and oxygen atoms of these two groups.
The cobalt(III) complexes display absorptions with maxima at 402 and 421 nm (1), 400 and 421 nm (2), 392 and 413 nm (3), 405 and 423 nm (4), 410 and 429 nm (5), and at 398 and 416 nm (6). These transitions correspond to the ligand-to-metal charge transfer transitons.60 Each complex displays additional bands in the higher energy region characteristic for intra-ligand transitions.
The mononuclear complexes [Co(HL)(L)] containing differently deprotonated aroylhydrazone ligands have been obtained by the reaction of the corresponding ligand H2L and [Co(acac)3] under solvothermal conditions. The molecular and crystal structures analyses of 1, 2 and 6·MeOH revealed octahedral arrangement of the tridentate ONO ligands via formation of two condensed chelate rings and the presence of both forms of the particular ligand (HL− and L2−) in the same complex molecule. The bond distances values in the coordination sphere of Co(III) are influenced by many factors such as charge, degree of the ligand deprotonation and involvement of the donor atom into hydrogen bond formation. The stabilization of the particular ligand form in the complex molecules occurs via intermolecular hydrogen bond formation between the –NH group of the singly-deprotonated ligand form and the nitrogen atom of the doubly-deprotonated form (in 1), with the phenolate and methoxy oxygen atoms (in 2) or with the solvent methanol molecule (in 6·MeOH). These hydrogen bonds shape different supramolecular assembling modes: 1D infinite chains in 1 and 6·MeOH, and centrosymmetrical dimers in 2.
The preferred formation of O–H⋯O and N–H⋯N hydrogen bonds in 1 over the O–H⋯N and N–H⋯O hydrogen bonds, results in channels that spread in each space dimension of the crystal structure. On the contrary, when formation of O–H⋯N and N–H⋯O in 2 is more stable than O–H⋯O and N–H⋯N, than the reaction favours the formation of interconnected structure with channels that spread only in one direction. Such channels that are formed in the structure of 2 are suitable for the accommodation of the methanol molecules.
Data collection for all structures has been performed by applying the CrysAlis Software system.63 The Lorentz-polarization effect was corrected and the intensity data reduced and the empirical absorption correction (by the multi-scanning method) were performed, all with the CrysAlis software package.60 The diffraction data have been scaled for absorption effects by the multi-scanning method. Structures solutions were accomplished by using direct methods followed by differential Fourier syntheses. Structure refinement was performed on F2 by weighted full-matrix least-squares. Programs SHELXS-2013 (ref. 64) and SHELXL-2013 (ref. 61) integrated in the WinGX65 software system (Version 2013.3) were used to solve and refine structures. All non-hydrogen atoms were refined anisotropically. Hydrogen atoms not involved in hydrogen bonding were placed in geometrically idealized positions and they were constrained to ride on their parent atoms [Csp2–H 0.93 Å with Uiso(H) = 1.2 Ueq(C) and Csp3–H 0.96 Å with Uiso(H) = 1.5 Ueq(C)], while the others are found as a peaks of small electron-densities in difference electron-density Fourier maps and refined with the restrained O–H (0.82 Å) and N–H (0.86 Å) distances and assigned isotropic displacement parameters being 1.2 times larger than the equivalent isotropic displacement parameters of the parent atoms.
As the compound H2L6 crystallizes in non-centrosymmetric space groups (Pc) due to the absence of significant anomalous scattering, the absolute structure could not be determined reliably and the corresponding Flack parameter was omitted from the final cif file (Flack parameter refined to a value of 0.8(10)).
In the complex 2·0.7CH3OH the refinement of occupancy factors for the O1 and C1 methanol atoms gave value of 0.7. Due to that, the performance of data collection at 150(2) K is undertaken in order to confirm the presence of residual density in the crystal voids and it is also interpreted, but more reliably, as the 0.7MeOH molecule per complex molecule. The final refinement procedure has been performed by PLATON SQUEEZE instruction at 296(2) K data.
The complex 6·MeOH contains disordered MeOH molecule with two possible spatial orientation of MeOH molecule within unit cell. This is imposed by the crystallographically determined setting of the carbon C16 atom at the 2-fold rotation axis. Therefore, the occupancy factors of the carbon C16 and oxygen O4 atom have been refined necessarily as fixed value of 0.5. The assignment of the type of atom has been performed on the basis of the type of disorder as well as by participation of the oxygen O4 atom in the hydrogen bonds formation with proton-donor groups of complex molecule (N2–H12N, C7–H7 and C8–H8; see ESI Table S4†). No hydrogen atoms have been assigned to the atoms of MeOH molecule.
The molecular geometry calculations were performed by PLATON (Version 130614)66 and PARST programs67 integrated in the WinGX software system. Drawings were made using Mercury68 and POV-Ray.69 Selected crystallographic and refinement data for structures obtained via single-crystal X-ray diffraction are summarized in Tables 4 and 5. Main geometrical features (selected bond distances and angles) along with hydrogen bond geometry for the structures are given in Tables S1–S4,† respectively.
Ligand | H2L3 | H2L5 | H2L6 |
---|---|---|---|
a R = ∑||Fo| − |Fc||/∑|Fo|.b wR = {∑[w(Fo2 − Fc2)2]/∑[w(Fo2)2]}1/2. | |||
Chemical formula | C15H14N2O4 | C15H14N2O3 | C15H14N2O3 |
Mr | 286.28 | 270.28 | 270.28 |
Crystal system, color and habit | Monoclinic, colourless, block | Monoclinic, pale yellow, prism | Monoclinic, colourless, prism |
Crystal dimensions (mm3) | 0.21 × 0.31 × 0.45 | 0.08 × 0.18 × 0.36 | 0.11 × 0.19 × 0.38 |
Space group | P21/c (no. 14) | P21/n (no. 14) | Pc (no. 7) |
Z | 4 | 4 | 4 |
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Unit cell parameters | |||
a/Å | 15.1547(3) | 9.1617(5) | 11.4472(6) |
b/Å | 8.3437(2) | 6.1414(4) | 12.6502(9) |
c/Å | 10.9630(2) | 23.4795(12) | 9.4907(5) |
α/° | 90 | 90 | 90 |
β/° | 101.307(2) | 94.806(5) | 97.657(5) |
γ/° | 90 | 90 | 90 |
V/Å3 | 1359.33(5) | 1316.45(13) | 1362.09(14) |
Dcalc/g cm−3 | 1.399 | 1.364 | 1.318 |
μ/mm−1 | 0.103 | 0.097 | 0.093 |
F(000) | 600 | 568 | 568 |
Index range | h: −19 to 20, k: −11 to 11, l: −14 to 14 | h:–11 to 9, k: −7 to 7, l: −22 to 29 | h:–14 to 14, k: −16 to 16, l: −11 to 12 |
Reflections collected | 18![]() |
8242 | 15![]() |
Independent reflections | 3447 [R(int) = 0.019] | 2848 [R(int) = 0.027] | 5950 [R(int) = 0.055] |
Number of reflections with [I > 2σ(I)] | 2778 | 1832 | 3419 |
Data/restraints/parameters | 3447/3/200 | 2848/2/188 | 5950/6/375 |
Final Ra indices [I > 2σ(I)] | R1 = 0.0402; wR2 = 0.1044 | R1 = 0.0458; wR2 = 0.0940 | R1 = 0.0644; wR2 = 0.1456 |
Rb indices (all data) | R1 = 0.0514; wR2 = 0.1122 | R1 = 0.0862; wR2 = 0.1078 | R1 = 0.1190; wR2 = 0.1735 |
Complex | 1 | 2 | 6·MeOH |
---|---|---|---|
a R = ∑||Fo| − |Fc||/∑|Fo|.b wR = {∑[w(Fo2 − Fc2)2]/∑[w(Fo2)2]}1/2. | |||
Chemical formula | C28H21CoN4O6 | C30H25CoN4O8 | C30H25CoN4O6·CH3OH |
Mr | 568.42 | 628.47 | 624.48 |
Crystal system, color and habit | Orthorhombic, dark red plate | Triclinic, dark red, irregular beaked plate | Monoclinic, dark red cube block |
Crystal dimensions (mm3) | 0.22 × 0.19 × 0.07 | 0.51 × 0.29 × 0.17 | 0.63 × 0.49 × 0.47 |
Space group | Ibca (no. 73) | P![]() |
C2/c (no.15) |
Z | 8 | 2 | 4 |
Unit cell parameters | |||
a/Å | 11.5874(6) | 10.2428(4) | 21.903(4) |
b/Å | 18.9530(9) | 12.2495(4) | 10.2910(8) |
c/Å | 23.1420(14) | 13.1323(6) | 12.5225(8) |
α/° | 90 | 102.594(3) | 90 |
β/° | 90 | 107.080(4) | 98.436(10) |
γ/° | 90 | 97.463(3) | 90 |
V/Å3 | 5082.4(5) | 1503.55(11) | 2792.0(5) |
Dcalc/g cm−3 | 1.486 | 1.388 | 1.486 |
μ/mm−1 | 5.737 | 4.953 | 0.672 |
F(000) | 2336 | 648 | 1288 |
Index range | h: −7 to 14, k: −20 to 23, l: −27 to 28 | h: −12 to 12, k: −14 to 14, l: −15 to 15 | h: −27 to 27, k: −13 to 13, l: −15 to 14 |
Reflections collected | 8906 | 14![]() |
7034 |
Independent reflections | 2410 [R(int) = 0.0785] | 5693 [R(int) = 0.0465] | 2915 [R(int) = 0.0313] |
Number of reflections with [I > 2σ(I)] | 1742 | 4808 | 2383 |
Completeness to θ = 67.68° (25.24° for 6·MeOH) | 100.0% | 99.9% | 96.0% |
Data/restraints/parameters | 2410/2/183 | 5695/3/399 | 2915/2/204 |
Final Ra indices [I > 2σ(I)] | R1 = 0.0512; wR2 = 0.1151 | R1 = 0.0532; wR2 = 0.1488 | R1 = 0.0502; wR2 = 0.1184 |
Rb indices (all data) | R1 = 0.0736; wR2 = 0.1305 | R1 = 0.0630; wR2 = 0.1571 | R1 = 0.0635; wR2 = 0.1248 |
Footnote |
† Electronic supplementary information (ESI) available: (1) DSC thermograms, (2) PXRD patterns, (3) TG curves, (4) figures for compounds (6) tables of selected bond distances and angles and of hydrogen bonds parameters and (7) 1H NMR spectra. CCDC [1432533–1432539 & crystallographic data sets for the structures H2L3, H2L5, H2L6, 1, 2, 2·0.7MeOH and 6·MeOH]. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c5ra22068h |
This journal is © The Royal Society of Chemistry 2015 |