Alexander S. Goloveshkina,
Natalia D. Lenenkoa,
Vladimir I. Zaikovskiibc,
Alexandre S. Goluba,
Alexander A. Korlyukova and
Ivan S. Bushmarinov*a
aA.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 119991, 28 Vavilova St., Moscow, Russia. E-mail: ib@ineos.ac.ru
bBoreskov Institute of Catalysis, Siberian Branch of RAS, 630090, 5 Lavrentieva Ave., Novosibirsk, Russia
cNovosibirsk State University, 630090, 1 Pirogova St., Novosibirsk, Russia
First published on 10th February 2015
Using a novel powder X-ray pattern refinement technique, DFT calculations and TEM, we reveal for the first time the three-dimensional structure of hybrid (R4N)xMoS2 layered compounds. Both the precise coordinates of Mo and S atoms in the inorganic layer and the preferred positions of the organic cations relative to them are reported. The distorted geometry of the MoS2 sheet is found to be the driving force behind the arrangement of cations within the organic layers. The refined atomic coordinates, confirmed by periodic DFT modeling, show octahedral Mo atoms arranged in zigzag chains and the S atoms following the Mo ones, forming “ridges” and “valleys” on the sheet surface. The size of alkylammonium cations is compatible with these valleys, leading to a strong preferred arrangement: the cations exclusively occupy the space between the ridges. This result allows predicting the layer structure and ultimately the composition of the hybrid compound depending on the cation structure. The reported features of the MoS2 surface are important for understanding of MoS2-based sensors and hybrid flexible conductors, both relying on charged sheets of MoS2.
A single layer of molybdenum disulfide consists of fused MoS6 polyhedra forming a flat, three atom thick S–Mo–S sandwich.3 Like graphene, these 2D sheets, both monolayerly thin2,4 or assembled in few-layer particles,5,6 are considered particularly important components for future nanoelectronic devices,2,4,6 sensors,7,8 and electrocatalysts.9 Chemical modification of 2D materials like graphene or molybdenum disulfide due to their non-covalent interactions with donor or acceptor molecules is a promising route to fine-tuning their properties for different applications.6,7,10–12
The unique feature of the MoS2 layers is the susceptibility of their atomic structure and properties to negative charge transferred onto layers. This charge induces atomic rearrangements13–17 and changes behavior of the resulting material from semiconducting to metallic.17–19 The process is usually referred as “2H to 1T phase transition”, but the actual rearrangement may involve at least three separate transitions between structurally distinct phases.20 Several MoS2 forms were also directly observed in metal-doped MoS2 under the beam of electronic microscope.21 The fully lithiated MoS2 displays a octahedral modification with Mo atoms organized in ‘diamond’ formation,15 while NaxMoS2 exhibits 2H, 1T and several 1T-based modulated phases depending on the value of x.22
Still, the detailed structural studies in the literature are limited to purely inorganic systems. As for MoS2–organic intercalation compounds, the form of MoS2 and the arrangement of the cations relative to the inorganic layers remain unknown and their elucidation is the main goal of this manuscript.
Hybrid MoS2-based heterostructures where organic cationic species16,23–26 (B+) are sandwiched between negatively charged sulfide layers are prepared by using the negatively charged MoS2 sheets as building blocks in self-assembly process (eqn (1)). The resulting particles are 2–10 layers thick.24,25
![]() | (1) |
The hybrid (B+)x(MoS2)x− compounds with alkylammonium cations easily form flexible conductive films.23,24 As intermediates, they find use in preparation of various mesoporous MoS2-based materials.27,28
Studies of similar substances by XRD, EXAFS,14,16 PDF,15 TEM,17,29 electron diffraction18,29 together with quantum-chemical calculations30,20 revealed that rearrangements of S–Mo–S network induced by the charge transfer lead to formation of molybdenum zigzag chains and probably change the MoS6 polyhedra from trigonal prisms (neutral layers) to octahedra (negatively charged layers). However, to the best of our knowledge, structures of hybrid MoS2–organic layered compounds have been neither resolved at the atomic level by any method nor successfully modeled using quantum-chemical approaches.
The obvious method for determination of the 3D structure of a substance is X-ray diffraction. Unfortunately, the MoS2-based hybrid compounds do not form single crystals, and their powder XRD patterns contain very few sharp peaks required for typical Rietveld refinement. The usually reported and easily measurable 00l reflections provide only the periodicity in the direction normal to the sulfide sheets and reveal neither the actual positions of the guest molecules between MoS2 layers nor the exact MoS2 layer structure. However, the modern developments in the X-ray diffraction theory allow going beyond sharp peaks in the analysis of the powder patterns. The aim of the current study was to extract novel structural information from the full powder patterns of hybrid MoS2 materials.
The tetramethyl- and tetraethylammonium layered salts (Me4N)0.25MoS2 and (Et4N)0.15MoS2, further referred to as TM and TE respectively, were chosen for detailed study due to their reproducible composition and symmetric guest moiety.
, where a is the unit cell parameter of crystalline15 2H-MoS2, indicate the presence of the 2 × 1 supercell often found32 in charged MoS2 layers. More notable is the complete absence of the hkl peaks; along with the asymmetric shape of the “plane group” peaks, it indicated that the materials are turbostratically disordered in a manner similar to clays or carbon black.33 In these structures, layers can move and rotate freely against each other, the hkl peaks disappear, and the hk0 peaks become hk diffraction bands, while the diffraction along the 00l direction still shows normal Bragg reflections.
There have been reports34–36 of quantifying the mixtures containing similarly disordered clays using a specially created supercell with scaled reflection intensities to represent the clay phase. In this work, we repurposed this approach for true structure refinement of the (R4N)xMoS2 structure, both of the MoS2 sheet and of the organic layer, simultaneously including the sharp 00l peaks and wide hk bands in the fit (see 4.2. Refinement model). To our knowledge, the current work is the first application of this model to MS2 structures or to any system except clays. The main advantage before the more commonly37 used Debye formula modeling is the possibility of direct least squares refinement of the studied structure.
Initially, atomic positions from 2H-MoS2 were used as starting coordinates for the refinement of the inorganic layer geometry. The models for both TM and TE converged to similar distorted layer structures with zigzag ordering of the Mo atoms, but the unusually close S⋯S distances and unsatisfying fit led to rejection of this model (see ESI for refinement details†).
Thus, we assumed octahedral14 coordination of Mo atoms (called 1T-MoS2 in the case of the exotic38 bulk crystalline species). The crystal structure of pure 1T-MoS2 has never been published, so we started the refinement with sulfur atoms approximately shifted to octahedral positions. It led to a reasonable structural model with a significantly better fit (TE Rwp of 4.339 as compared to 5.762 in the distorted prismatic model).
The main features of the resulting structure, distinguishing it from the idealized octahedral one, are zigzag chains of the Mo atoms (Fig. 2) and pronounced displacement of the sulfur atoms (Fig. 3): the S atoms bound to only one Mo chain form ‘ridges’, and sulfur atoms linking two different chains form ‘valleys’ between. These S–S–S valleys are ≈0.5 Å deep, and their effective width matches one of a CH2 group (see Fig. 3). As an external check, the refined Mo–Mo distances for TM (Table 1) agreed well with the EXAFS data reported in the literature16 (3.76 Å, 3.15 Å, 2.77 Å). Also this structure is in line with published quantum-chemical calculations32 indicating that the removal of Li from fully-lithiated MoS2 leads to metastable ZT-MoS2 with similar arrangement of atoms, since TM is produced via LiMoS2.
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| Fig. 3 TM structure, view in the b direction. The spacefill model represents the van der Waals radii of the corresponding elements. | ||
| TE | TE calculateda | TM | DE | |
|---|---|---|---|---|
| a Values provided are averaged over the 3 × 3 × 1 supercell used in the computation.b Calculated as zSridge − zSvalley. | ||||
| Composition | (Et4N)0.15MoS2 | (Et4N)1/6MoS2 | (Me4N)0.25MoS2 | (Et2NH2)0.16MoS2 |
| a, Å | 5.6924(5) | 5.6924 | 5.6925(5) | 5.7098(13) |
| b, Å | 3.2083(3) | 3.2083 | 3.2126(3) | 3.2187(8) |
| c, Å | 11.168(4) | 11.168 | 11.096(5) | 10.017(7) |
| Rbragg, % | 1.380 | — | 1.714 | 1.944 |
| Rwp, % | 4.507 | — | 3.542 | 4.543 |
| Mo–Mo distances, Å | 2.808(7) | 2.835 | 2.789(6) | 2.852(6) |
| 2.832(8) | 3.220 | 2.800(6) | 2.873(6) | |
| 3.2083(3) | 3.753 | 3.2126(3) | 3.2187(8) | |
| 3.737(6) | 3.762(4) | 3.715(5) | ||
| 3.756(6) | 3.771(4) | 3.731(5) | ||
| Mo–Mo–Mo, ° | 69.35(4) | 69.1 | 70.2(2) | 68.42(5) |
| Mo–S, Å | 2.400(5) | 2.441 | 2.400(5) | 2.400(5) |
| Valley depthb, Å | 0.527(5) | 0.385 | 0.561(3) | 0.548(5) |
Along with the MoS2 layer geometry, the refinement revealed the coordinates of the organic moiety within the unit cell: both in TM and TE, organic cations lie in the valleys between the Mo–Mo zigzags. The least squares procedure provided only approximate average occupancies of organic moiety due to correlations with Debye–Waller factor. To obtain precise occupancies and further insight into organic layer structure, we studied possible layer packings by placing maximum number of cations into refined positions on the MoS2 sheet while avoiding collisions (Fig. 4).
As we found out, the idealized composition of the organic layers can be estimated by counting the amount of cations fitting in the valleys without violation of the typical intermolecular distances. Optimal C⋯C contact distance between tetraalkylammonium cations is 3.2 Å according to CSD,39 allowing one cation per two unit cells in TM and one per three in TE (Fig. 4). Each unit cell contains two Mo atoms and four S, predicting R4N/MoS2 ratio of 0.17 for TE and 0.25 for TM, equal to the experimental composition within the precision of the chemical analysis. The tetraethylammonium cation is large enough to restrict cation placement not only in its “own” valley, but also in the neighboring ones; still, a favorable diagonal arrangement resulting in complete filling of all valleys is possible. It should be noted that above rules define only the local ordering and do not impose any additional long-range periodicity, as can be seen on Fig. 4.
Analysis of TM and TE strongly suggests that the structure of the organic layer is determined by the ridges and valleys on MoS2 surface and not simply by dense packing of the cations in a given space between “flat” MoS2 sheets. This hypothesis was checked by preparing the salt of diethylammonium cation and MoS2 (DE) and analyzing its composition and structure. Indeed, the Et2NH2+ cation has the same atom count and volume as Me4N+, so we could expect a composition with 0.25 cations per MoS2 formula unit in the case of dense packing of the organic layer. The diethylammonium cation, however, should occupy the same space as Et4N+ when fitted within a MoS2 valley, leading to maximum 1/6 cations per MoS2 if these valleys play the major role. The experimental composition, with 0.16 cations per MoS2 unit, supports the latter model.
The fit of the DE experimental powder pattern using the same method as TE and TM (see ESI†) also confirms that the linear Et2NH2+ fragments occupy the space in the valleys of distorted 1T-MoS2.
Due to the interactions between cations in neighboring valleys, the cation layer packing in TE is the most ordered among the studied compounds. This fact allowed assembling a reasonable periodic approximation of the refined structure using only the [X + 1, Y + 1, Z] operation to fit the cation rows together and ignoring the turbostratic disorder (see ESI† for computational details). This very simplified model still reproduced the experimental Mo layer geometry, including the ridges and valleys, with high precision; the difference in refined and calculated bond lengths was similar to one usually achieved for calculations based on experimental single crystal data (Table 1).
The calculated structure was additionally studied using the R.F.W. Bader's quantum theory of atoms in molecules (QTAIM).40 This theory reveals bonding interactions and charge transfer using topological analysis of the total electron density ρ(r). In addition, the energy of weak interactions can be estimated using Esminosa–Molins–Lecomte (EML) correlations initially developed for weak hydrogen bonds41–43 but further applied to a wide range of interactions,44 including those in 2H-MoS2.45
Each cation forms on average 18 S⋯H contacts with the MoS2 layers, totaling 18.0 kcal mol−1 of interaction energy, and 13 H⋯H contacts with neighboring cations, for 18.2 kcal mol−1 total (Table 2). Thus the interactions within the organic layer are of similar importance for the formation of the structure as the interlayer ones, explaining the stable stoichiometry of MoS2 hybrid compounds. The organic cations also stabilize the MoS2 layer by charge transfer (0.17e per cation, measured by integration of ρ(r) over the QTAIM atomic basins). Indeed, excess LiMoS2 in the reaction mass leads to a two-phase system containing hybrid layered compound and 2H-MoS2 instead of a single hybrid phase with lowered organic content.
| Count | d, Å | ρ(r) | ∇2ρ(r) | ge(r) | ve(r) | he(r) | EEML, kcal mol−1 | ||
|---|---|---|---|---|---|---|---|---|---|
| Mo | S | 36 | 2.398 | 0.096 | 0.176 | 0.087 | −0.130 | −0.043 | −40.6 |
| Mo | S | 36 | 2.433 | 0.090 | 0.157 | 0.078 | −0.118 | −0.039 | −36.9 |
| Mo | S | 36 | 2.492 | 0.082 | 0.132 | 0.066 | −0.100 | −0.033 | −31.2 |
| Mo | Mo | 18 | 2.835 | 0.057 | 0.087 | 0.039 | −0.056 | −0.017 | −17.5 |
| H | S | 54 | 3.065 | 0.007 | 0.020 | 0.004 | −0.003 | 0.001 | −1.0 |
| H | H | 39 | 2.447 | 0.008 | 0.028 | 0.006 | −0.004 | 0.001 | −1.4 |
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| Fig. 5 The TEM image of a turbostratically disordered TE particle (basal projection) and its FFT (on the right). | ||
This problem of representativeness of basal projections of these particles became obvious during the examination of the visibly ordered images. The particles fell into two groups: purely hexagonal ones with period of 2.7 Å (see ESI, Fig. S2†) and those with grouping of the spots in twin rows, corresponding to a superperiod of ≈5.75 Å (Fig. 7d). The former can be attributed to 2H-MoS2 while the latter can only be modeled using the layer structure obtained from XRD data (Fig. 7b and c).
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| Fig. 6 The TEM image of the side projection of TE and FFT transforms of its fragments with corresponding period values. | ||
The powder patterns of TE show no presence of 2H-MoS2. However, according to previous studies, heating of exfoliated–restacked MoS2 to 400 K in vacuum leads to 2H-MoS2 phase,46,17 and processes of degradation for intercalated MoS2 particles were observed in the MoS2—long-chain alkylammonium system under electronic beam.25
The FFT processing of the TEM side projections of the studied particles provides d001 distances ranging from 9.16 Å to 11.66 Å (Fig. 6). The mean c-value obtained by refinement of XRD patterns (11.168 Å) lies near the upper end of this range.
The TEM results confirm the presence of hybrid layered compound and of MoS2 layers showing distorted octahedral structure among the particles of TE. Still, we cannot exclude the possibility that this structure coexists with the prismatic modification similar to 2H-MoS2, at least in the few-layer samples subjected to electronic irradiation in the microscope. Recently, coexistence of the domains with 1T (octahedral) and 2H (trigonal prismatic) modifications was revealed in TEM studies of MoS2 layers obtained by removal of Li from LiMoS2 (ref. 17) or partial lithiation.32
It is important to state explicitly that shifts and rotations of the layers against each other are not refined and are not even present in the model, assuming a complete absence of positional correlation. The refinement details regarding the line broadening functions, preferred orientation correction and Mo–S restraints can be found in the ESI.†
The studied compounds demonstrate distorted octahedral (1T) geometry of the MoS2 sheets, with 2 × 1 orthorhombic supercell as a repeating unit and Mo atoms forming zigzag chains.
The important new feature compared to previously reported structures of similar materials are the displacements of the sulfur atoms: the S atoms above Mo zigzags form ‘ridges’ and between these ridges lie ‘valleys’ 0.5 Å deep. Most notably, the width of the ‘valleys’ is complementary for a CH2 or a CH3 group, leading to organic cations packing exclusively in the valleys. This preference is the main cause behind the composition of the studied materials: the amount of cations per MoS2 unit in the organic layer is determined not by dense packing of the organic cations, but by the amount of the cations fitting in the valley. At the same time, the space above ‘ridges’ is strongly unfavorable for cation placement. This result has strong implications for the surface chemistry of 1T-MoS2 and materials based on it, such as sensors and flexible conductors. By taking into account the uneven surface of the charged 1T-MoS2 sheet one can predict both the composition of the surface layer and the preferential placement of molecules in it.
The approach used to obtain and verify the discussed structures can reveal previously inaccessible structural features and thus can be useful for studies of similar inorganic–organic compounds with loosely coupled layers, based on metal dichalcogenides, graphene, BN etc.
Footnote |
| † Electronic supplementary information (ESI) available: Experimental details of syntheses, TEM, powder X-ray diffraction measurements and calculations; CIF files, calculated geometry data, powder datasets. CCDC 1035816–1035818. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c4ra15662e |
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