Baotao Kang‡
a,
Hu Shi‡a,
Shihai Yan*b and
Jin Yong Lee*a
aDepartment of Chemistry, Sungkyunkwan University, Suwon, 440746, Korea. E-mail: jinylee@skku.edu
bCollege of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Qingdao, 266109, P. R. China. E-mail: shyan@qau.edu.cn
First published on 20th August 2014
Density functional theory calculations have been carried out for the ground state (S0) and the first excited state (S1) of the H-bonded phenol and imidazole complex as a model system for the active site of photosystem II. Potential energy surfaces (PES) of S0 and S1 along the proton transfer coordinate were obtained. Based on the relative stability and small energy barrier for proton transfer, it was found that proton transfer could take place in the excited state both in vacuum and in water. As confirmed by the charge distribution, the proton transfer is determined to be coupled with electron transfer (PCET) in vacuum, while not in water. Such phenomenon should originate from the solvent effect stabilizing π* state with a large dipole moment, which results in a different structure of the product.
An important example of PCET is observed in tyrosine/tyrosyl radicals.6 Tyrosine/tyrosyl radicals of PS II have received a great attention due to the diversity of radical types such as TyrD˙ and Tyrz˙ as well as the rapid kinetics of radical formation.15,16 Besides, being a protogenic amino acid tyrosine plays a special role by virtue of its phenol functionality. Phenol, also known as carbolic acid, is the simplest aryl alcohol, and its ability to accept and donate both electrons and protons has been extensively investigated.17–19 It has been established that phenoxy radical (PhO˙) provides an accurate structural and spectroscopic model for tyrosine phenoxy radical,20 and its properties such as charge distribution, spin density, vibrations, and others have been intensively investigated.21 Phenol complexes with other simple molecules such as water, ammonia and bases22–27 have been used as valuable models that encompass hydrogen bonding, electron transfer, and proton pumping at the molecular level. Histidine, an integral amino acid residue in many important biological systems, can serve as a base or as a weak acid. Imidazole is often utilized as a model compound for histidine. The hydrogen-bonded complex of phenol and imidazole has been used as a model to study electron and proton transfer between tyrosine and histidine residues upon the oxidation of tyrosine in PS II.28,29 It has been confirmed that oxidation of the phenol–imidazole complex triggers spontaneous proton transfer from phenol to imidazole and subsequently the imidazole proton can further migrate to a distant acceptor pool.24 However, to the best of our knowledge, there are no studies on the possible proton transfer by electronic excitation at the active site in PS II. Hence, density function theory (DFT) calculations were carried out to investigate the proton and electron transfer under photo excitation in vacuum and water solvent. The potential energy surface (PES) for the ground (S0) and the first excited (S1) states along the proton transfer coordinate was studied to investigate the detailed mechanism. We found that proton transfer can take place in the excited state both in vacuum and water.
For a chemical reaction, solvent effects have an important influence on the potential energy barrier, enthalpy difference, and so on. In the present study, Tomasi's polarizable continuum model (PCM) by self-consistent reaction field (SCRF) method was utilized to investigate the solvent effect on the electron/proton transfer. In PCM model, the cavity was defined as the union of a series of interlocking atomic spheres. The polarization effect of the solvent continuum was computed by numerical integration. In addition, water molecules may play a vital role in proton transfer processes. Thus, we carried out QM/MM calculations treating explicitly the water molecules in the first hydration shell. We capsulated PH–IM with water box of 22 Å (about 3300 water molecules) as demonstrated in Fig. S1 in ESI,† and optimized the structures by treating PH–IM and water molecules within 6 Å quantum mechanically and other water molecules by MM. Amber 12 (ref. 33) software was employed in this simulation with TIP3P34 potential for classical water molecules, QM for PH–IM, and PM3 for water molecules within 6 Å. Meanwhile the rests as MM part were dealt with Amber ff99SB force field.34 The cutoff value for QM and MM parts was 6 Å and 8 Å, respectively. Temperature (300 K) was controlled by the Berendsen thermostat with coupling constants of 1.0 ps and the trajectory of last 200 ps was collected for further analysis. After optimization, we selected PH–IM and the water molecules in the first hydration shell (54 water molecules) and the structure was fully optimized by CAM-B3LYP/6-31+G*. Apart from QM/MM calculation, all calculations were performed using a suite of Gaussian 09 programs.35
The PESs of S0 and S1 for the complex in vacuum along the O–H coordinate were obtained (Fig. 2). The PES of S0 monotonically increases as the O–H distance increases, with only one local minimum (denoted as PH–IM). Whereas, the PES of S1 shows a double well curve, where there are two minima (PH–IM* and P–HIM*) and one transition state (TS*) connecting them. In PH–IM* and P–HIM*, the proton exists in phenol and imidazole, respectively. From frequency calculation, TS* was confirmed to be a transition state because only one imaginary frequency (173 icm−1) was observed with H moving to IM moiety. In addition, PH–IM* and P–HIM* can be considered as local minima without imaginary frequency (an imaginary mode less 40 icm−1 for P–HIM* is negligible as usual). Some important structural parameters were listed in Table 1. Additionally, the behaviors of RO–N and angle of C–O–H (∠COH) along proton transfer were studied and shown in ESI.† In vacuum, the O–H bond length (RO–H) increased and C–O bond length (RC–O) decreased upon excitation. The interatomic distances of O–N (RO–N) and N–H (RN–H) also decreased upon excitation, which implies a strengthened hydrogen bonding. For the transition state of the excited state (TS*), RO–H was calculated to be 1.080 Å and RC–O/RO–N further decreased to 1.310/2.592 Å. After proton transfer from phenol to imidazole in the excited state (P–HIM*), RC–O decreased to 1.242 Å and RO–N1 increased to 2.909 Å. It is worthy to note that the proton is localized along the C–O axis rather than the O–H axis of phenol, as reflected by the increased ∠COH from 110° in PH–IM* to 172° in P–HIM* (Fig. S2†). Considering the relative stability and small barrier (1.09 kcal mol−1), excited state proton transfer (ESPT) can take place in vacuum. Here we proposed that the proton affinity (PA) of imidazole plays an important role. First, it provides an abstraction force to detach the phenolic proton. Second, it can stabilize the proton transferred complex. For example, as reported earlier in phenol and water complex, PH–W* lies 18 kcal mol−1 below P–HW* along the PES, i.e. ESPT cannot take place. As the PA increases from 167 kcal mol−1 of water40 to 204 kcal mol−1 of amonia,41 P–HNH3* becomes more stable than PH–NH3* by about 1 kcal mol−1, with a much reduced energy barrier of 9 kcal mol−1. Here the PA of imidazole is 229 kcal mol−1,42 the P–HIM* in vacuum was much stabilized and the barrier further decreased to 1.09 kcal mol−1.
Medium | RO–H | RC–O | RO–N | RN–H | ∠COH | |
---|---|---|---|---|---|---|
a The distance is given in the unit of Å and the angle was given in °. | ||||||
Vacuum | PH | 0.961 | 1.364 | 110 | ||
PH* | 0.965 | 1.339 | 110 | |||
PH–IM | 0.984 | 1.350 | 2.801 | 1.821 | 112 | |
PH–IM* | 1.008 | 1.320 | 2.686 | 1.681 | 113 | |
TS* | 1.080 | 1.310 | 2.592 | 1.514 | 114 | |
P–HIM* | 1.900 | 1.242 | 2.909 | 1.010 | 172 | |
Water | PH–IM | 1.000 | 1.351 | 2.715 | 1.718 | 113 |
PH–IM* | 1.050 | 1.308 | 2.575 | 1.528 | 115 | |
TS* | 1.170 | 1.295 | 2.480 | 1.312 | 118 | |
P–HIM* | 1.556 | 1.275 | 2.624 | 1.070 | 125 |
Then the solvent effect via PCM model was taken into account. For isolated PH and IM, solvent shows a slight effect on the absorption properties. The λabs of the ππ* and πσ* transitions were 237 nm and 210 nm for PH in water and that of πσ* transition for IM was 204 nm IM in water. The relative stability and energy barrier of the complex during the proton transfer are greatly influenced by environment such as external electric field and solvent polarity. When the solvent effect was included, the H-bonding of PH–IM is enhanced as evidenced by the interatomic distances. The RO–N decreased by 0.086 Å to 2.715 Å, while RC–O and RO–H increased slightly by 0.016 Å and 0.001 Å to 1.000 Å and 1.351 Å, respectively. When solvent effect was included, the absorption energies of PH–IM slightly changed to give the ππ* transition of 243 nm and the πσ* transition of 216 nm, respectively. To investigate the solvent effect on the proton transfer reaction, the PESs of S0 and S1 were obtained considering the solvent medium by polarizable continuum model (PCM) method, and the results were displayed in Fig. 2(b). The S0 PES in water is a single-well curve similar to that in vacuum. In contrast to the S0 PES, the S1 PES is a double-well curve. The two local minima along the S1 PES were denoted by PH–IM* and P–HIM* depending on the occurrence of the phenolic proton, and the transition state was denoted by TS*. From frequency calculations, PH–IM* and P–HIM* have been proved to be local minima without any imaginary frequency, and TS* is real transition state with only one imaginary mode (789 icm−1) with H moving to IM. Photoexcitation could enhance the H-bonding of PH–IM in water as reflected by the reduced RO–N and RH–N of PH–IM*. RO–N and RH–N decreased from 2.715 Å and 1.718 Å of PH–IM to 2.686 Å and 1.686 Å of PH–IM*, respectively. In addition, RC–O decreased to 1.320 Å and RO–H increased to 1.008 Å, implying a weakened phenolic O–H bond which is similar to those in vacuum. As the proton transfers to imidazole (P–HIM*), RO–N further decreased to 2.624 Å. The RO–H was 1.556 Å and the ∠COH increased slightly from 118° of PH–IM* to 135° of P–HIM* (Fig. S2†). That is, the proton is located mostly along the O–H direction, which is different to that in vacuum. In water, for TS*, the phenolic proton is located nearly at the center of the phenolic O and the imidazole N, with RO–H1/RH1–N1 of 1.170/1.312 Å, respectively. Moreover, RO–N at the TS* is much reduced to 2.480 Å. From the PES, P–HIM* is energetically more stable than PH–IM* by 1.8 kcal mol−1. With the consideration of the small energy barrier (0.4 kcal mol−1), the ESPT can take place in water from PH–IM* to P–HIM*. Meanwhile for the reverse ESPT from P–HIM* to PH–IM*, the energy barrier slightly increases to 2.2 kcal mol−1. The reverse ESPT should be possible to take place if some excess of energy was induced.
As shown in Fig. 2(c), in bulk water only one water was found to form H-bonding to the phenolic O atom which is consistent with a previous report.43 As a result, RO–H was slightly elongated to 1.018 Å and RO–N slightly reduced to 2.641 Å. The λabs of the ππ* and πσ* transitions are 245 nm and 213 nm, which are almost consistent with those by PCM model. Based on the optimized structure, the PESs of S0 and S1 were obtained by gradually increasing RO–H with freezing other coordinates since ESPT process is too fast to adjust structural relaxation. As shown in Fig. 2(c), the PESs obtained by explicitly treating water molecules in the first hydration shell resembled those obtained by PCM model. GSPT cannot take place due to the single well potential with PH–IM as most stable conformer, while ESPT can occur because P–HIM* is more stable than PH–IM* by ∼1 kcal mol−1 and the energy barrier is about 3 kcal mol−1. That is, solvent effect by PCM model was same as the result by explicit treatment of water. Hence, the followings were based on the results by PCM model to save computational cost. Due to the small barrier and relative stability, this ESPT reaction in solvent should be strongly influenced by the environment conditions, such as temperature, external electric filed and so on.
Subsequently, the dipole moment of S0 and S1 both in vacuum and water was calculated along the phenolic proton transfer coordinate (in Fig. 3). In both vacuum and water, the dipole moment of the ground state increased as the proton transfers. For S1 in vacuum, the dipole moment increased from 7.0 D of PH–IM* to 8.4 D of TS*, then decreased to 4.4 D as the proton transfers to P–HIM*. The phenomena are similar to that of the phenol complexed with water in gas phase.38 In addition, the dipole moment difference between S0 and S1 was small before reach TS/TS* in vacuum. After passing the TS/TS*, the dipole moment difference became larger as the proton transfers as shown in Fig. 3(a). However, in water, the dipole moment of S1 has a similar trend with that of S0 as the proton transfers. To further elucidate this issue, the charge distribution was analyzed with/without solvent effect. Here we set the phenolate and the phenolic proton as a group, and obtained the group charge by the sum of the atomic charges of the atoms belonging to the group (Fig. 4). In vacuum, as seen clearly, photo-induced charge separation did not occur until TS/TS*. After passing TS/TS*, the group charge became to be positively charged (0.8 e) in the excited state, which indicates an intermolecular electron transfer from the phenol to the imidazole moiety. Then it gradually decreased to ∼0.5 e upon proton transfer. Thus, the reaction in vacuum is a proton coupled electron transfer (PCET) process. Moreover, the much smaller dipole moment of the P–HIM* in vacuum also originates from the charge separation during the proton transfer. However, no obvious charge separation upon excitation was observed in water. For the PH–IM/PH–IM*, the phenol was slightly positively charged (0.04 e). At the TS/TS*, it turned to be slightly negatively charged (−0.04 e). The behavior of the group charge of S1 along the proton transfer process is almost equivalent to that of S0. After passing TS/TS*, the phenol moiety became to be negatively charged up to −0.3 e in P–HIM/P–HIM*. Thus it turns out to be only a proton transfer reaction.
The difference in the behavior of charge distribution in vacuum and in water should originate from the MO reordering as solvent being applied. As confirmed by the MOs in vacuum, the first excitation corresponded to ππ* transition before TS/TS*, and it turns to be πσ* transition after crossing TS (TS*). Differently from the case in vacuum, the first excitation in water corresponded to ππ* transition. This phenomenon was previously observed in phenol–amine system.44 There, the energy profile of the π* state monotonously increases upon proton transfer in gas phase. When the solvent effect was taken into account, the PES of the π* state changes from a single-well to a double-well curve with a small barrier (0.4–1.3 kcal mol−1). Such change could be ascribed to the larger dipole moment of ππ* state as reflected from Fig. 3, which can be much stabilized to be the first excited state.
The electron density changes upon excitation obtained by Multiwfn program45 were shown in Fig. 5. For PH–IM in vacuum and in water, the p electrons of O atom and C atom in para-position move to the C atoms in ortho- and meta-position upon excitation. Hence, the electron density of the oxygen decreases, meanwhile that of the benzene ring increases leading to an intramolecular CT process. This intramolecular charge transfer process destabilizes the hydroxyl group and makes it easier to detach the proton from phenol. It is noticeable that the electron density changes of P–HIM in vacuum and water are different. In vacuum, upon excitation the electron in phenol moiety moves to the imidazole ring inducing an intermolecular CT process. When solvent effect was applied, it turns to be an intramolecular CT process which is similar to PH–IM. In vacuum the transferred electron mostly localizes at the N atom H-bonded to phenol, which can further drive proton transfer. At the same time, it also induces the different structures of P–HIM* in vacuum and water.
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Fig. 5 The electron density changes upon the first excitation for PH–IM and P–HIM both in vacuum and water (pale blue: electron density decrease, violet: electron density increase). |
Footnotes |
† Electronic supplementary information (ESI) available: Figures of initial structure of PH–IM in water box with cubic length of 22 Å for QM/MM calculation and behaviors of RO–N and ∠COH both in vacuum and water. See DOI: 10.1039/c4ra05306k |
‡ These authors equally contributed to this work. |
This journal is © The Royal Society of Chemistry 2014 |