Manideepa
Saha
,
Rajendar
Nasani
,
Mriganka
Das
,
Shaikh M.
Mobin
,
Biswarup
Pathak
and
Suman
Mukhopadhyay
*
Department of Chemistry, School of Basic Sciences, Indian Institute of Technology Indore, IET-DAVV Campus, Khandwa Road, Indore 452017, India. E-mail: suman@iiti.ac.in; Fax: +91 731 2361 482; Tel: +91 731 2438 705
First published on 24th July 2014
The 1,3-dipolar cycloaddition reaction of cis-[Co(N3)2(en)2]NO31 with different organonitriles (NCR) under focussed microwave irradiation produced bis-tetrazolate complexes [Co(N4CR)2(en)2](NO3). Interestingly, in the case of 3-cyano pyridine the reaction produced both cis- and trans-isomers (cis-2 and trans-2), whereas for 4-cyano pyridine the compound obtained was exclusively cis (cis-3) and for 4-bromobenzonitrile it was only the trans- (trans-4) compound which was isolated. This indicates a probable role of remote substitution of the phenyl ring in dictating the formation of the preferential isomer. When starting from the trans-isomer of the diazido complex (trans-[Co(N3)2(en)2]ClO4, 1a), upon reacting with different nitriles a mixture of cis- and trans-isomers of [Co(N4CR)2(en)2]ClO4 was produced in each case, with a greater preference towards cis-geometry [R = 4-NC5H4 (cis-5 and trans-5), 4-BrC6H4 (cis-6 and trans-6) and C6H5 (cis-7 and trans-7)]. The preferential formation of the cis-analogue of compound trans-4 when starting from the trans-precursor was quite curious. A theoretical investigation of compounds trans-4 and cis-6 reveals that the greater stability of the trans-complex 4 may arise from additional van der Waals interactions in the solid state because of the presence of an extra DMF molecule as solvent of crystallization. However, an interacting counter-anion and a probable halogen–halogen interaction may also contribute to the formation of preferential isomers for cycloaddition complexes, even in the solution state.
Herein, we have investigated the reactions of different organonitriles with cobalt(III) coordinated azides and found that cis-[Co(N3)2(en)2]NO3 and trans-[Co(N3)2(en)2]ClO4 react with various RCN compounds to give the corresponding cis- or trans-bis(tetrazolate) complexes or their mixtures depending upon various factors like remote substitution, counter-anion used or solvent of crystallization in the cycloadded tetrazolato ligand.
Caution! Azide, tetrazolate and perchlorate compounds are potentially explosive. Only a small amount of material should be prepared and should be handled with care.
:
4 ratio (Fig. S1: ESI†). The mixture was separated by ion-exchange chromatography using SP-Sephadex C-25, which is a strongly acidic (–SO3−Na+) cation exchanger based on cross-linked dextran. 0.1 M NaNO3 solution was used as the elution solvent to run the column. Both isomers were then recrystallized from a DMF–diethyl ether mixture. Although it was possible to grow suitable X-ray diffraction-quality crystals for compound cis-2 during recrystallization, no single crystal was obtained for the corresponding trans isomer.
N 1640, NO3 1384. Anal. Calc. for C19H24N16O4Co (599.43): C 38.03; H 4.00; N 37.36; Found: C 37.92; H 3.89; N 37.20; MS(ESI): m/z = 471.15 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.29–2.90 (m, 8H, CH2), 4.73 (s, 2H, NH2), 5.04 (s, 2H, NH2), 5.81 (s, 2H, NH2), 6.29 (s, 2H, NH2), 6.60 (s, 2H, aromatic), 7.50 (s, 2H, aromatic), 8.30 (s, 2H, aromatic), 8.58 (s, 2H, aromatic) (see Fig. S2: ESI† for 1H NMR spectrum).
N 1617, NO3 1384. Anal. Calc. for C19H24N16O4Co (599.43): C 38.03; H 4.00; N 37.36; Found: C 37.83; H 3.82; N 37.03; MS(ESI): m/z = 471.15 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.06–2.26 (m, 8H, CH2), 4.55 (s, 8H, NH2), 6.78–7.55 (m, 8H, aromatic) (see Fig. S3: ESI† for 1H NMR spectra).
N 1614, NO3 1384. Anal. Calc. for C20H24N15O4Co (597.47): C 40.16; H 4.01; N 35.14; Found: C 39.94; H 3.89; N 35.04; MS(ESI): m/z = 471.20 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.34–2.83 (m, 8H, CH2), 4.60 (s, 2H, NH2), 4.85 (s, 2H, NH2), 5.82 (s, 2H, NH2), 6.31 (s, 2H, NH2), 7.91 (d, 4H, aromatic), 8.87 (d, 4H, aromatic) (see Fig. 1 for 1H NMR spectra).
N 1665, NO3 1384. Anal. Calc. for C21H31N14O4Br2Co (762.35): C 33.05; H 4.06; N 25.70; Found: C 32.85; H 3.90; N 25.31; MS(ESI): m/z = 626.99 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.45 (s, 8H, CH2), 5.41 (s, 8H, NH2), 7.73 (d, 4H, aromatic), 8.08 (d, 4H, aromatic) (see Fig. 2 for 1H NMR spectra).
:
2 ratio (see Fig. S4: ESI† for 1H NMR spectrum). Separation of the mixture was attempted by an ion-exchange method with SP-Sephadex C-25. However, only the cis-compound could be isolated upon elution with NaNO3 whereas the trans-compound decomposed in the ion-exchange resin column. The resultant cis-compound was then recrystallized from a methanol–diethyl ether mixture, which furnished some X-ray diffraction-quality crystals.
N 1612, ClO4 1096. Anal. Calc. for C16H26N14O5CoCl (588.85): C 32.60; H 4.41; N 33.28; Found: C 32.06; H 4.10; N 33.07; MS(ESI): m/z = 471.15 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 1.91–2.82 (m, 8H, CH2), 4.57 (s, 2H, NH2), 4.84 (s, 2H, NH2), 5.82 (s, 2H, NH2), 6.30 (s, 2H, NH2), 7.91 (d, 4H, aromatic), 8.67 (d, 4H, aromatic) (see Fig. S5: ESI† for 1H NMR spectra).
:
1 (see Fig. S6: ESI† for 1H NMR spectrum). However the mixtures could not be separated by an ion-exchange method as both compounds decomposed in the column. Recrystallization of the brown powder from a methanol–diethyl ether mixture provides a crystalline compound which has been found to still be a mixture. However, it was possible to grow single crystals of the cis-isomer by this method.
N 1666, ClO4 1126. Anal. Calc. for C18H24N12O4Br2CoCl (726.65): C 29.72; H 3.30; N 23.11; Found: C 30.00; H 3.62; N 22.98; MS(ESI): m/z = 627.18 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.32–2.88 (m, 8H, CH2), 4.52, 4.91, 5.80, & 6.27 (all singlets, 8H, from the cis isomer), 5.41 (s, 8H, from the trans isomer), 7.66–8.10 (m, 8H, aromatic) (see Fig. S7: ESI† for 1H NMR spectra).
:
1 ratio (see Fig. S8: ESI† for 1H NMR spectrum). The mixture was separated by an ion-exchange method as previously described for the other compounds and then separately recrystallized from a methanol–ether mixture. However, only the cis-isomer produced some crystals suitable for X-ray analysis.
N 1640, ClO4 1048. Anal. Calc. for C19H26N12ClCoO5 (596.9): C 38; H 4.61; N 29.55; Found: C 37.56; H 4.92; N 28.72; MS(ESI): m/z = 469.16 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.27–2.89 (m, 8H, CH2), 4.63 (s, 2H, NH2), 4.99 (s, 2H, NH2), 5.79 (s, 2H, NH2), 6.27 (s, 2H, NH2), 7.42–7.98 (m, 10H, aromatic) (see Fig. S9: ESI† for 1H NMR spectra).
N 2230, νC
N 1637, ClO4 1046. Anal. Calc. For C47H46N16ClCoO5 (1009.35): C 55.87; H 4.55; N 22.19; Found: C 55.56; H 4.25; N 22.02; MS(ESI): m/z = 469.16 [M]+. 1H NMR: δH (400 MHz, DMSO-d6, Me4Si): 2.01 (s, 4H, CH2), 2.26 (s, 4H, CH2), 4.47 (s, 8H, NH2), 6.49–7.18 (m, 10H + 20H, 5-phenyltetrazole + benzonitrile) (see Fig. S10: ESI† for 1H NMR spectra).
The positions of all the atoms were obtained by direct methods. All non-hydrogen atoms were refined anisotropically. The remaining hydrogen atoms were placed in geometrically constrained positions and refined with isotropic temperature factors, generally 1.2Ueq of their parent atoms. The crystal and refinement data are summarized in Table 1, and selected bond distances and bond angles for cis-2, cis-3, trans-4 and (cis-5)–(cis-7) are shown in Tables 2–7 and Table S1 (ESI†).
| cis- 2 | cis- 3 | trans- 4 | |
|---|---|---|---|
| Empirical formula | C38H48N32O8Co2 | C20H24N15O4Co | C21H31N14O4CoBr2 |
| Formula weight | 1198.94 | 597.47 | 762.35 |
| Wavelength (Å) | 0.71073 | 0.71073 | 0.71073 |
| Temperature (K) | 293(2) | 150(2) | 293(2) |
| Crystal system | Monoclinic | Monoclinic | Triclinic |
| Colour and shape | Yellow needle | Yellow needle | Yellow needle |
| Space group | P21/c | P21/c |
P![]() |
| a (Å) | 18.5537(5) | 11.6957(6) | 8.5104(7) |
| b (Å) | 20.4481(7) | 18.9480(6) | 12.417(2) |
| c (Å) | 14.4208(5) | 12.5618(3) | 16.104(2) |
| α (°) | 90 | 90 | 109.442(14) |
| β (°) | 91.001(3) | 92.388(4) | 100.647(9) |
| γ (°) | 90 | 90 | 95.584(10) |
| Volume (Å3) | 5470.2(3) | 2781.40(18) | 1553.7(4) |
| Z | 4 | 4 | 2 |
| D calcd (mg m−3) | 1.456 | 1.427 | 1.672 |
| μ(Mo Kα) (mm−1) | 0.685 | 0.673 | 3.193 |
| F(000) | 2472 | 1232 | 788 |
| Crystal size (mm) | 0.32 × 0.28 × 0.24 | 0.33 × 0.26 × 0.21 | 0.38 × 0.34 × 0.29 |
| θ range (°) | 3.00 to 25.00 | 3.17 to 25.00 | 3.05 to 25.00 |
| Limiting indices | −22 ≤ h ≤ 22 | −13 ≤ h ≤ 11 | −10 ≤ h ≤ 10 |
| −24 ≤ k ≤ 24 | −22 ≤ k ≤ 22 | −14 ≤ k ≤ 12 | |
| −17 ≤ l ≤ 17 | −14 ≤ l ≤ 14 | −19 ≤ l ≤ 19 | |
| Total/unique no. of reflns. | 31 738/9616 |
15 822/4888 |
10 996/5454 |
| R int | 0.0629 | 0.0387 | 0.0545 |
| Data/restr./params. | 9616/0/721 | 4888/25/361 | 5454/0/384 |
| GOF(F2) | 1.026 | 1.034 | 1.057 |
| R 1, wR2 | 0.0589, 0.1390 | 0.0502, 0.1328 | 0.0751, 0.2081 |
| R 1, wR2 (all data) | 0.1020, 0.1721 | 0.0676, 0.1467 | 0.1078, 0.2381 |
| Peak and hole (e Å–3n) | 0.729 and −0.449 | 0.587 and −0.316 | 0.907 and −0.719 |
| cis- 5 | cis- 6 | cis- 7 | |
|---|---|---|---|
| Empirical formula | C32H50N28O9Co2Cl2 | C18H24N12O4Br2CoCl | C19H26N12O5CoCl |
| Formula weight | 1159.76 | 726.65 | 596.9 |
| Wavelength (Å) | 0.71073 | 0.71073 | 0.71073 |
| Temperature (K) | 150(2) | 293(2) | 150(2) |
| Crystal system | Monoclinic | Trigonal | Orthorhombic |
| Color and shape | Yellow needle | Yellow needle | Yellow needle |
| Space group | P21/c |
P c1 |
P212121 |
| a (Å) | 11.6499(7) | 12.545(3) | 13.0541(4) |
| b (Å) | 16.1363(13) | 12.545(3) | 13.3594(7) |
| c (Å) | 13.5916(11) | 32.893(16) | 14.8320(4) |
| α (°) | 90.00 | 90.00 | 90 |
| β (°) | 95.163(6) | 90.00 | 90 |
| γ (°) | 90.00 | 120.00 | 90 |
| Volume (Å3) | 2544.7(3) | 4483(3) | 2586.63(17) |
| Z | 4 | 6 | 10 |
| D calcd (mg m−3) | 1.511 | 1.585 | 1.533 |
| μ(Mo Kα) (mm−1) | 0.834 | 3.381 | 0.823 |
| F(000) | 1192 | 2108 | 1232 |
| Crystal size (mm) | 0.26 × 0.21 × 0.18 | 0.33 × 0.25 × 0.08 | 0.23 × 0.18 × 0.13 |
| θ range (°) | 2.94 to 25.00 | 1.24 to 20.92 | 3.14 to 24.99 |
| Limiting indices | −13 ≤ h ≤ 13 | −12 ≤ h ≤ 12 | −15 ≤ h ≤ 15 |
| −19 ≤ k ≤ 19 | −12 ≤ k ≤ 12 | −12 ≤ k ≤ 15 | |
| −16 ≤ l ≤ 14 | −33 ≤ l ≤ 32 | −17 ≤ l ≤ 17 | |
| Total/unique no. of reflns. | 21 371/4471 |
33 225/1589 |
18 243/4554 |
| R int | 0.0740 | 0.1818 | 0.0367 |
| Data/restr./params. | 4471/0/334 | 1589/0/164 | 4554/0/343 |
| GOF(F2) | 1.067 | 1.156 | 1.104 |
| R 1, wR2 | 0.0678, 0.1706 | 0.0896, 0.2471 | 0.0418, 0.1103 |
| R 1, wR2 (all data) | 0.0908, 0.1951 | 0.1374, 0.3084 | 0.0451, 0.1131 |
| Peak and hole (e Å–3n) | 0.820 and −0.715 | 1.762 and −0.819 | 0.524 and −0.474 |
| Co(1)–N(5) | 1.904(4) | N(5)–Co(1)–N(10) | 91.90(16) |
| Co(1)–N(10) | 1.907(4) | N(1)–Co(1)–N(4) | 178.46(16) |
| Co(1)–N(1) | 1.955(4) | N(5)–Co(1)–N(3) | 174.28(16) |
| Co(1)–N(3) | 1.958(4) | N(5)–Co(1)–N(2) | 87.56(15) |
| Co(1)–N(2) | 1.958(3) | N(10)–Co(1)–N(1) | 90.31(16) |
| Co(1)–N(4) | 1.952(4) | ||
| N(5)–N(7) | 1.305(5) | ||
| N(7)–N(8) | 1.341(5) |
| Co(01)–N(10) | 1.919(2) | N(10)–Co(01)–N(5) | 87.98(12) |
| Co(01)–N(5) | 1.919(3) | N(10)–Co(01)–N(2) | 174.76(13) |
| Co(01)–N(4) | 1.953(3) | N(10)–Co(01)–N(4) | 91.38(11) |
| Co(01)–N(3) | 1.953(3) | N(3)–Co(01)–N(1) | 176.90(11) |
| Co(01)–N(1) | 1.956(3) | N(4)–Co(01)–N(1) | 92.42(12) |
| Co(01)–N(2) | 1.956(3) | ||
| N(5)–N(6) | 1.314(4) | ||
| N(6)–N(7) | 1.340(4) |
| Co(1)–N(3) | 1.915(6) | N(3)#1–Co(1)–N(3) | 180.0(3) |
| Co(1)–N(5) | 1.956(5) | N(3)–Co(1)–N(6) | 89.5(2) |
| Co(1)–N(6) | 1.951(5) | N(6)–Co(1)–N(6)#1 | 180.0(3) |
| N(3)–N(2) | 1.297(7) | ||
| N(2)–N(1) | 1.350(8) |
| Co(1)–N(9) | 1.902(4) | N(9)–Co(1)–N(5) | 92.38(17) |
| Co(1)–N(4) | 1.960(4) | N(9)–Co(1)–N(3) | 90.79(17) |
| Co(1)–N(5) | 1.913(4) | N(5)–Co(1)–N(3) | 89.99(17) |
| Co(1)–N(3) | 1.942(4) | N(9)–Co(1)–N(1) | 90.19(17) |
| Co(1)–N(1) | 1.949(4) | N(5)–Co(1)–N(1) | 90.12(18) |
| Co(1)–N(2) | 1.955(4) | N(3)–Co(1)–N(1) | 179.01(17) |
| N(5)–N(6) | 1.311(6) | N(9)–Co(1)–N(2) | 175.50(17) |
| N(5)–N(8) | 1.341(6) | N(5)–Co(1)–N(2) | 89.40(17) |
| N(6)–N(7) | 1.345(6) | N(3)–Co(1)–N(2) | 93.34(17) |
| N(9)–N(10) | 1.321(6) | N(1)–Co(1)–N(2) | 85.67(17) |
| N(9)–N(12) | 1.339(5) | N(9)–Co(1)–N(4) | 86.82(18) |
| N(10)–N(11) | 1.344(6) | N(5)–Co(1)–N(4) | 175.79(18) |
| N(3)–Co(1)–N(4) | 85.89(18) | ||
| N(1)–Co(1)–N(4) | 94.02(19) | ||
| N(2)–Co(1)–N(4) | 91.70(18) |
| Co(1)–N(4) | 1.936(11) | N(4)–Co(1)–N(4)#3 | 90.9(6) |
| Co(1)–N(4)#3 | 1.936(11) | N(4)–Co(1)–N(1) | 91.6(4) |
| Co(1)–N(1) | 1.935(9) | N(4)#3–Co(1)–N(1) | 91.1(4) |
| Co(1)–N(1)#3 | 1.935(9) | N(4)–Co(1)–N(1)#3 | 91.1(4) |
| Co(1)–N(2)#3 | 1.943(10) | N(4)#3–Co(1)–N(1)#3 | 91.6(4) |
| Co(1)–N(2) | 1.943(10) | N(1)–Co(1)–N(1)#3 | 176.1(6) |
| N(4)–N(5) | 1.312(13) | N(4)–Co(1)–N(2)#3 | 175.7(4) |
| N(4)–N(3) | 1.328(13) | N(4)#3–Co(1)–N(2)#3 | 89.2(4) |
| N(6)–N(5) | 1.321(14) | N(1)–Co(1)–N(2)#3 | 92.8(4) |
| N(1)#3–Co(1)–N(2)#3 | 84.5(4) | ||
| N(4)–Co(1)–N(2) | 89.2(4) | ||
| N(4)#3–Co(1)–N(2) | 175.7(4) | ||
| N(1)–Co(1)–N(2) | 84.5(4) | ||
| N(1)#3–Co(1)–N(2) | 92.8(4) | ||
| N(2)#3–Co(1)–N(2) | 91.1(6) |
| Co(01)–N(1) | 1.935(4) | N(1)–Co(01)–N(2) | 86.0(1) |
| Co(01)–N(2) | 1.972(3) | N(1)–Co(01)–N(3) | 91.5(1) |
| Co(01)–N(3) | 1.947(3) | N(1)–Co(01)–N(4) | 177.5(1) |
| Co(01)–N(4) | 1.962(4) | N(1)–Co(01)–N(5) | 90.8(1) |
| Co(01)–N(5) | 1.920(3) | N(1)–Co(01)–N(9) | 92.1(1) |
| Co(01)–N(9) | 1.906(3) | N(2)–Co(01)–N(3) | 92.7(1) |
| N(5)–N(6) | 1.343(4) | N(2)–Co(01)–N(4) | 94.0(1) |
| N(5)–N(7) | 1.310(6) | N(2)–Co(01)–N(5) | 175.7(1) |
| N(7)–N(8) | 1.339(5) | N(2)–Co(01)–N(9) | 86.9(1) |
| N(9)–N(10) | 1.327(5) | N(3)–Co(01)–N(4) | 85.9(1) |
| N(9)–N(12) | 1.345(4) | N(3)–Co(01)–N(5) | 90.2(1) |
| N(10)–N(11) | 1.345(4) | N(3)–Co(01)–N(9) | 176.3(1) |
| N(4)–Co(01)–N(5) | 89.4(1) | ||
| N(4)–Co(01)–N(9) | 90.4(1) | ||
| N(5)–Co(01)–N(9) | 90.4(1) |
However, the single crystal X-ray diffraction data collection for compound cis-6 was performed using a Bruker-APEX-II CCD diffractometer with graphite monochromated MoKα radiation (λ = 0.71073 Å). The structures were solved by SIR-9216, available in WinGX, which successfully located most of the non-hydrogen atoms. Subsequently, least square refinements were carried out on F2 using SHELXL-97 (WinGX version)15 to locate the remaining non-hydrogen atoms. All non-hydrogen atoms were refined anisotropically and most of the hydrogen atoms were refined isotropically on calculated positions using a riding model.
:
4 ratio (in the absence of any other clear cut demarcation between both isomers, calculations are based on the integration of the 1H NMR peak observed due to the nitrogen protons in ethylenediamine for the cis- and trans-isomers). However, the reaction with 4-cyanopyridine yielded purely the cis-isomer (cis-3) as a reddish-brown product. A similar reaction with 4-bromobenzonitrile furnished exclusively the trans-isomer of the bis(tetrazolato) complex (trans-4), indicating a possible role of remote substitution at the 5-position of the phenyl ring in the preferential geometry of the cycloaddition complex. In all the reactions, DMF was used as the solvent because of the poor solubility of the precursor complexes in other common organic solvents. In view of the above findings, we were interested in checking the outcome when the starting material is in the trans-configuration. As there is no report, to the best of our knowledge, of the existence of any compound like trans-[Co(N3)2(en)2]NO3, we have therefore synthesized a known compound trans-[Co(N3)2(en)2]ClO41a as per the literature procedure.14 Upon reaction of 1a with 4-cyanopyridine, 4-bromobenzonitrile and benzonitrile we have obtained a mixture of cis- and trans-isomers of the bis(tetrazolate)complexes [Co(N4CR)2(en)2]ClO4 in tentatively 5
:
2, 4
:
1 and 9
:
1 ratios, respectively (Scheme 2). This result indicates a possible role of the counter-anion in dictating the preferential isomer of the tetrazolate complexes. However, only the cis-isomer of the tetrazolate complex synthesized from 4-cyanopyridine has been separated by the ion-exchange chromatographic method (cis-5). A similar effort to separate the isomers of the bromo-substituted tetrazolato complexes (cis-6 and trans-6) was futile as both compounds decomposed in the ion-exchange column. However, both geometrical isomers (cis-7 & trans-7) of [Co(5-phenyltetrazolato)2(en)2]ClO4 can be separated by ion-exchange column chromatography.
All the reactions were carried out using focussed microwave radiation at 130 °C for 1–3 h. Most of the complexes are soluble in methanol, dichloromethane and DMF.
All the complexes (except for trans-5, cis-6 & trans-6) have been characterized by elemental analyses, IR spectroscopy, ESI-MS and 1H NMR spectroscopy. As cis-6 and trans-6 could not be separated from the mixture, it was characterized as a whole by IR spectroscopy, elemental analysis, ESI-MS and 1H NMR spectroscopy. None of the IR spectra of the compounds show the typical azide band that was present at ca. 2078 and 2019 cm−1 for complex 1 and 2016 cm−1 for complex 1a, and display a new strong band within the 1612–1665 cm−1 range due to the tetrazole ring, in agreement with the literature.7,8,26,27 In the ESI-MS of all the bis(tetrazolate) complexes the molecular ion peaks have been observed, confirming the presence of the bistetrazolate ligands in the metal complexes.
1H NMR spectroscopy was used to determine the relevant ratios of the geometrical isomers that have been obtained as a result of the cycloaddition reactions. In the absence of any other clear cut distinguishable protons between the cis- and trans-isomers, integration of the NH2 protons has been used to calculate a tentative ratio of the geometrical isomers generated in the solution state. Each individual isomer has been further characterized with the help of 1H NMR spectroscopy. All the cis-isomers show four signals within the range of 4.51–6.37 ppm, typical for nitrogen protons of ethylenediamine in the cis-[Co(en)2] group,28 while the CH2 groups of ethylenediamine show a more complex multiplet within the range of 1.91–2.90 ppm as reported elsewhere.29 The results obtained are in good agreement with similar types of (ethylenediamine)cobalt complexes reported earlier.30–32 All the trans-isomers show a single peak in the range of 4.47–5.41 ppm, attributed to the nitrogen protons of ethylenediamine, while the CH2 protons are observed in the range of 2.01–2.45 ppm. Some additional protons in the aromatic region observed for compound trans-7 may be attributed to the presence of free benzonitrile, which might have been entrapped during the crystallization of the compound. This fact is also further supported by the presence of a small nitrile peak at 2130 cm−1 in the IR spectrum of the compound and by elemental analysis result.
Liberation of 5-substituted tetrazole from the bis(tetrazolato) complexes was carried out by treating the precursor tetrazolato-metal complexes with an excess of sodium azide in methanol. After refluxing the mixture for 2 hours the filtrate was evaporated to dryness and the residue was washed with diethyl ether, which upon concentration provides the respective 5-substituted tetrazole in its neutral form rather than the sodium salt, as is evident by the presence of the protonated form of the molecular ion peak [MH]+ in ESI-MS. In all probability, the tetrazolate ion picks up one proton from the water present in the solvent. Apart from using ESI-MS, all these tetrazoles have been identified using 1H and 13C NMR spectroscopy, which correspond well with earlier reports.17–25
The Co3+ ion with d6 configuration in an octahedral crystal field in the solution state gives mostly one absorption band due to the d–d transitions in the octahedral CoN6 crystal field. The strong band which is observed in the range of 443.7–450.9 nm is assigned to the 1A1g→1T1g transition while the absorptions due to the transition 1A1g→1T2g are mostly masked (correlated to a very weak shoulder) due to the presence of a long tail of the charge-transfer peaks.33,34 The presence of other electronic transitions which appear in the UV region can be correlated to the π→π* transition in the ligand (Table 8). One thing to be noted here is that although not much difference has been observed in the absorption spectra of the different isomers, it should be mentioned that they are not totally identical (Fig. S11: ESI†).
| Compound no. | λ, nm (ε, M−1 cm−1) |
|---|---|
| cis- 2 | 446.8 (180) |
| trans- 2 | 447.5 (171) |
| cis- 3 | 445.1 (147), 249.8 (22 400), 202.5 (42 200) |
| trans- 4 | 443.7 (174), 252.9 (47 000), 203.5 (71 300) |
| cis- 5 | 446.7 (165) |
| trans- 5 | Cannot be separated |
| Mixture of cis-6 and trans-6 | 447.6 (72), 242 (137 000), 204.6 (120 900) |
| cis- 7 | 450.86 (72) |
| trans- 7 | 446.27 (91) |
The first type of molecule is coordinated to different surrounding nitrate ions through N2–H2B⋯O555, N4–H4B⋯O555, C1–H1C⋯O111, N1–H1B⋯O111, N1–H1B⋯O222 and C16–H16⋯O222 interactions (Fig. S12a†). The second independent molecule is also connected to the counter-ions by several similar hydrogen bonding interactions. In addition, these molecules are interconnected through the pyridyl nitrogens [N3–H3B⋯N23 and N4–H4A⋯N28] to form two strands of a one-dimensional chain structure interconnected through hydrogen bonding via nitrate anions along the a-axis (Fig. S12b†) (N2–H2B⋯O555, N4–H4B⋯O555, N1–H1B⋯O111, C1–H1C⋯O111, N16–H16⋯O011, N17–H17A⋯O011, N15–H15B⋯O666 and N17–H17B⋯O666). One of the independent molecules is further stabilized by hydrogen bond formation between DMF and one of the en molecules attached to the metal centre (N1–H1A–O888). There are two types of nitrate ion. One is forming a hydrogen bonded 1D polymer by forming bridges between the two crystallographically independent molecules and the other is helping to join the two strands together by hydrogen bond formation (Fig. S12c†).
Compound cis-3, which crystallizes in the monoclinic space group P21/c, crystallographically shows one independent structure. The cis configuration of the compound has been enforced by weak H-bonding interactions between one nitrate ion and two en molecules attached to the same metal center (N1–H1A⋯O111, N4–H4B⋯O111 and N1–H1A⋯O333) (Fig. 4). Two such molecules are hydrogen bonded to each other via a mutual interaction through N4–H4A⋯N14, involving a pyridyl nitrogen atom and one of the hydrogens of the en ligand (Fig. S13a†). These dimers are further mutually interconnected via C16–H16⋯N9, forming a ladder type of structure along the c-axis (Fig. S13b†). These strand type ladder structures are interconnected by a hydrogen bonded nitrate structure (N3–H3B⋯O222, N2–H2B⋯O222 and N4–H4B⋯O111) in a three dimensional way to form a hydrogen bonded framework (Fig. S13c†). A diethylether molecule has also been observed as the solvent of crystallization, which is also associated with one of the ethylene diamine hydrogens via hydrogen bonding (N1–H1B⋯O101).
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| Fig. 4 View of weak H-bonding interactions between the nitrate ion and two ethylenediamine molecules attached to the same metal center in cis-3. | ||
The single crystal X-ray structure of cis-5 confirms the formation of the cis configuration of the compound. It crystallizes in the monoclinic space group P21/c and exhibits 3-D supramolecular arrays formed by hydrogen bond interactions. In 5, the Co(III) resides in an octahedral co-ordination geometry (Fig. 5). Each cationic unit is connected to three neighbouring oxygen atoms of the perchlorate anion via N1–H1B⋯O333, N1–H1B⋯O444, C2–H2A⋯O333, N4–H4A⋯O333, N2–H2A⋯O111, C3–H3A⋯O111 and N3–H3A⋯O444 interactions (Fig. S14a†). Furthermore, in this network each unit is connected to two adjacent units through the pyridyl nitrogen atom and hydrogens of the en ligand via N3–H3B⋯N14, C2–H2B⋯N13 and N2–H2B⋯N13 interactions along the b-axis (Fig. S14b†). All of these H-bonds together form a 3D supramolecular framework structure.
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| Fig. 5 View of local co-ordination geometry at the Co(III) centre in cis-5 where the tetrazolato ligands are cis to each other. | ||
Although the refinement factor for the crystal structure of compound cis-6 is on the high side, it unequivocally indicates that the two tetrazolate ions coordinate the metal ion in a cis-fashion through the N2-atoms (Fig. 6). The dihedral angle between the tetrazole and the phenyl ring is found to be 22.73° for both ligands. Each perchlorate ion is found to be connected with three molecules through three equivalent oxygen atoms (C1–H1A⋯O1 and C9–H9⋯O1). This is further supported by N1–H1B⋯O2 hydrogen bonding (Fig. S15a†) and may also be helping to enforce the cis-geometry within the molecule. The independent molecules are packed along the a-axis and b-axis through H-bonding between different molecules and the perchlorate counter ions help in forming a hydrogen bonded 2D polymer in the ab-plane. All these networks, which are running in the direction of the ab-plane, orient in such a way that due to the complexes being in the cis conformation the para-substituted bromine atoms get stacked one upon another along the b-axis as well as the a-axis (Fig. S15b†). However, long distance Br⋯Br interactions between the bromine atom of one molecule and two other bromine atoms of neighbouring molecules [Br–Br 4.969 Å] may also contribute to the preferential cis-geometry of complex cis-6.
Compound cis-7 crystallizes in space group P212121 and the metal–nitrogen distances are found to be in the range of 1.906–1.972 Å, typical for the Co3+ ion. The tetrazolato ligands are cis to each other (Fig. 7). The perchlorate counter ions are found to be connecting different molecules via hydrogen bonding interactions, viz. N1–H1A⋯O222, C3–H3D⋯O222, N3–H3B⋯O333, N3–H3B⋯O555, N4–H4B⋯O555, C3–H3C⋯O444, N4–H4B⋯O444 and N2–H2B⋯O444 (Fig. S16a†), leading to the formation of a hydrogen bonded 3D network (Fig. S16b†).
having two crystallographically independent complex molecules with very similar geometries (Fig. 8). Two tetrazolato ligands coordinate in a trans fashion and the twist of the phenyl ring with respect to the coordinated tetrazole rings is different for the two independent molecules. The dihedral angle has been found to be 4.74° for the first type, whereas for the second type this is about 25.02° for both 5-substituted tetrazole ligands. The twist in the ring can be attributed to the H-bond formation between an ethylenic hydrogen of one molecule and tetrazolyl nitrogen of the adjacent complex (N5–H5B⋯N11) (Fig. S17a†). These molecules are further interconnected by different ethylenic hydrogens and tetrazolyl nitrogens (N5–H5B⋯N11 and N8–H8A⋯N1) to form a 1D-chain along the b-axis (Fig. S17b†). This chain structure is further supported by nitrate ions which connect the four different molecules surrounding each one by hydrogen bonds (C7–H7⋯O111, N8–H8B⋯O111, N8–H8B⋯O333, N6–H6B⋯O333 and C9–H9A⋯O222), which altogether forms a 2D-network in the ab-plane (Fig. S17c†). Furthermore, one DMF molecule has been found hydrogen bonded to the first type of cobalt center via a N5–H5A⋯O101 hydrogen bond. The consequence is that all 5-substituting bromine atoms are found to be aligned in a single line when viewed along the a- or b-axis (Fig. S17d†). The nearest Br⋯Br [Br(1)⋯Br(2)] contact has been found to be 4.082 Å, slightly larger than the sum of the van der Waals radii. However, the formation of a long distance Br⋯Br interaction could be one of the driving forces for the crystallization of the molecule in the trans-geometry.
We have studied these complexes in their solid state structures retaining their space group geometries. Periodic boundary conditions are used for the three dimensional structure modelling. First-principles calculations are used, using the projected augmented wave (PAW) method as implemented in the Vienna ab initio simulation package (VASP) for their structural relaxation.35–37 The exchange–correlation interaction is treated in the level of the GGA using the Perdew–Burke–Ernzerhof model (GGA-PBE).38 We have calculated the van der Waals corrected interaction energies using the semi-empirical correction of Grimme,39 as available with VASP for the accurate treatment of the weak intermolecular interactions between the metal complexes. Our calculations show that both complexes (trans-4 and cis-6) are minima in their potential energy surfaces. The calculated van der Waals interaction energies for the complexes trans-4 and cis-6 are 4.90 and 4.30 eV (per molecular unit), respectively. Therefore, the van der Waals interaction energy is more for the trans geometry. Interestingly, in the trans (trans-4) geometry, we found that one solvent molecule (DMF) is trapped for each molecular unit. To understand the possible role of the solvent in the preferred geometry, we have removed the solvent from the crystal structure of the trans-4 complex and relaxed the structure, retaining the same space group geometry. We find that the calculated van der Waals interaction energies are reduced from 4.90 eV to 3.99 eV per molecular unit. Therefore, each solvent molecule is contributing around 20.98 kcal (0.91 eV) towards the total van der Waals interaction energy. Therefore the weak interaction directed by the solvent molecule possibly plays a major role in crystallizing the complex trans-4 in the trans geometry.
:
4 ratio. However, the interaction with 4-cyanopyridine produced exclusively the cis-isomer of the bis(tetrazolate) complex and reaction with 4-bromobenzonitrile produced the bis(tetrazolate) complex in the trans disposition, indicating the role of remote substitution of the phenyl ring in the formation of the preferential isomer. The interaction of trans-[Co(N3)2(en)2]ClO4 under similar conditions with 4-cyanopyridine, 4-bromobenzonitrile and benzonitrile furnished mixtures of cis- and trans-isomers of the bis(tetrazolate) complexes where the cis-geometry predominates. It has been assumed that it is possibly the counter-anion which is helping the compound to crystallize and is also interacting with the complex in the solution state to contribute to the preferential geometrical isomer formation upon cycloaddition. Further, a DFT calculation study indicates that the trans isomer trans-4 is being further stabilized by means of van der Waals interactions through an extra DMF molecule (compared to cis-6), which is present as solvent of crystallization, along with some Br⋯Br halogen interactions. Furthermore, 5-substituted tetrazole can be isolated from the bis(tetrazolate) complexes by treating them with excess sodium azide.
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 933043–933047 and 935043. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c4qi00089g |
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