Stuart
Kennedy
a,
Christine M.
Beavers
b,
Simon J.
Teat
b and
Scott J.
Dalgarno
*a
aInstitute of Chemical Sciences, Heriot-Watt University, Riccarton, Edinburgh, EH14 4AS, Scotland, UK. E-mail: S.J.Dalgarno@hw.ac.uk; Fax: +44 (0)131 451 3180; Tel: +44 (0)131 451 8025
bLawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 6R2100, Berkeley, California 94720, USA
First published on 12th March 2014
The conformational properties and self-assembly behaviour of the p-carboxylatocalix[4]arenes, when in the presence of a pyridine template, are well understood. Salt formation with these molecules, a process driven by the introduction of an amino group to the 2-position of the pyridine template, has dramatic consequences on both building block conformation and the resulting self-assembly.
The basic calix[4]arene (C[4]) framework adopts a cone conformation due to the presence of concerted H-bonding interactions at the polyphenolic lower-rim. This can be readily modulated through C[4] lower-rim alkylation to afford, amongst others, partially pinched-cone (via di-O-alkylation) and fully pinched-cone (via tetra-O-alkylation) conformers as shown in Fig. 1A; tetra-O-alkylation with methyl or ethyl chains allows for conformational inversion through the C[4] annulus, and chains greater or equal to propyl in length are known to lock the molecule in the fully pinched-cone conformation.6 Once the desired conformer (or structurally mobile C[4] for OMe and OEt derivatives) has been synthesised, the introduction of upper-rim carboxylic acid functionality is relatively straightforward. We have investigated the assembly of a range of pCO2[4]s containing two4b,d,f,g or four4c,e lower-rim alkyl chains in the presence of pyridine (Py), picoline and ethylpyridine templates.
Fig. 1 A) Control over C[4] conformation by di- and tetra-O-alkylation at the lower-rim. B) Schematic of the Py⋯CO2H heterosynthon. C) Head-to-head H-bonded capsule formed by crystallisation of a di-O-alkylated pCO2[4] in the presence of a Py template.4f D) Schematic of the 2-aminopyridinium-carboxylate heterosynthon. |
In the aforementioned series of studies we found that a) the components generally formed the expected Py⋯CO2H heterosynthon shown in Fig. 1B, b) if a cavity is present (e.g. in a lower-rim di-O-alkyl pCO2[4]) it will be occupied by a Py or Py derivative guest template,4b,d,f,g c) host–guest pCO2[4]/Py (or Py derivative) arrangements dimerise to form capsules4a,b,d,f,g (Fig. 1C) and d) Py or Py derivative templates form the aforementioned heterosynthon but do not force access to the potential cavity of a lower-rim tetra-O-alkyl pCO2[4] (fully pinched-cone conformation, Fig. S1†).4c,e Here we report interesting effects on the conformational properties of a series of tetra-O-alkyl pCO2[4]s, as well as their assembly preferences, once salt formation has been performed via introduction of an amino group to the Py template (using 2-aminopyridine, 2-AP).7 This well-known heterosynthon was targeted for structural comparison with related Py⋯CO2H driven assembly of pCO2[4]s (compare Fig. 1B and D), and it was anticipated that deprotonation of the upper-rim would cause deviation from the fully pinched-cone conformation due to repulsion of CO2− groups. We screened salt formation in methanol between 2-aminopyridine (2-AP) and the series of p-carboxylato-O-alkylcalix[4]arenes shown in Fig. 2;‡ single crystals of salts formed for 1, 3 and 4, and the interesting structural features of these assemblies are described in order below.
Single crystals of the salt (5) formed between 1 and 2-AP were found to be in a monoclinic cell and structure solution was performed in the space group P21/n.† The asymmetric unit in 5 consists of one molecule of 1 (with three of four upper-rim CO2H groups deprotonated), four 2-AP molecules (three of which are protonated, H2-AP) and two and a half methanol molecules (the half being disordered by symmetry) of crystallisation (Fig. 3). The most noticeable feature upon inspection is that 1 unexpectedly adopts a partial pinched-cone conformation; as stated above, lower-rim OMe groups allow for conformational mobility, and crystallisation of 1 from 4-picoline affords a structure in which the calixarene adopts a partial-cone conformation with inversion of one aromatic ring.4e,8 One of the aromatic rings of 1 in 5 is slightly splayed in comparison to the others within the framework. One H2-AP cation occupies the resulting host cavity, forming various intermolecular interactions as shown in Fig. 3; there are CH⋯π and π-stacking interactions between guest and host, occurring with respective H[42]⋯aromatic centroid and aromatic centroid⋯aromatic centroid distances of 2.6 Å and 3.975 Å. There is also an HNH⋯OCO H-bonding interaction between the cationic guest and an upper-rim CO2− group of 1 with an H[43A]⋯O[6] distance of 2.2 Å. Symmetry expansion around the guest in 5 results in formation of a H-bonded head-to-head dimer/capsule as shown in Fig. 4. This occurs through formation of the targeted heterosynthon shown in Fig. 1D,7 with an NH⋯OCO H-bonding interaction between H[38] and symmetry equivalent (s.e.) O[7] (H[38]⋯O[7]s.e. distance of 1.8 Å), as well as an HNH⋯OCO H-bonding interaction between H[43B] and O[8]s.e. (H[43B]⋯O[8]s.e. distance of 2.0 Å). The two remaining 2-AP cations in 5 also interact with upper-rim CO2− groups of 1 through formation of the same heterosynthon (Fig. 3); this occurs with two NH⋯OCO (respective H[45]⋯O[6] and H[52]⋯O[12] distances of 1.7 and 1.9 Å) and two HNH⋯OCO H-bonding interactions (respective H[50B]⋯O[5] and H[57B]⋯O[11] distances of 2.0 and 1.9 Å). The neutral 2-AP in the asymmetric unit interacts with two upper-rim CO2− groups of 1via two HNH⋯OCO interactions with H[64A]⋯O[6] and H[64B]⋯O[7] distances of 2.1 and 2.1 Å. The three methanol molecules of crystallisation form a range of OH⋯OCO and OH⋯O H-bonding interactions; these occur between neighbouring MeOH of crystallisation, or CO2H/CO2− groups of 1 (Fig. 3).
Further symmetry expansion of the asymmetric unit around the splayed/protonated upper-rim CO2H group in 1 reveals an OCOH⋯OCO H-bonding interaction to an upper-rim CO2− group of an s.e. molecule (Fig. 4); this unique OCOH⋯OCO interaction occurs with an H[9]⋯O[12] distance of 1.8 Å. Examination of the extended structure reveals that these capsules, linked by H-bonding interactions, pack in an anti-parallel bi-layer motif (Fig. S2†) akin to several previously reported for the Py derivative solvates of pCO2[4]s.4e The final noteworthy feature of 5 is that the closest distance between C atoms of the upper-rim CO2− groups in 1 was found to be ~7.4 Å. This is significantly greater than values typically observed for the distance between upper-rim CO2H groups in tetra-O-alkyl pCO2[4]s where the lower-rim alkyl chain is greater or equal to propyl in length; the respective distances observed for 3 and 4 are ~4.1 and ~3.7 Å upon crystallisation from Py or the picolines.4e Unfortunately we have been unable to crystallise 1 in a fully pinched-cone conformation to date so it is therefore not possible to make direct structural comparison between neutral and anionic forms, or draw conclusions relating to upper-rim charge repulsion and or associated cationic guest inclusion in this particular case.
Single crystals of the salt (6) formed between 3 and 2-AP were found to be in a triclinic cell and structure solution was performed in the space group P.† The asymmetric unit in 6 is large and comprises two molecules of 3 (with all upper-rim CO2H groups deprotonated), eight molecules of 2-AP (all of which are protonated and one of which is disordered over two positions), two molecules of methanol, six and a half water molecules and a disordered methanol/water of crystallisation (0.33 and 0.67 occupancies respectively). Simple inspection of 6 reveals that each calixarene cavity is occupied by a H2-AP cation, but to differing extents (Fig. 5). In the first of these there are two CH⋯π interactions observed between both the meta hydrogens of the H2-AP and aromatic rings on the anionic host (Fig. 5A); these occur with H[92]⋯aromatic centroid and H[94]⋯aromatic centroid distances of 3.1 and 2.8 Å respectively. As is the case in 5 there is concomitant HNH⋯OCO H-bonding between the cationic guest and an upper-rim CO2− group of the host; this occurs with an H[95B]⋯O[7] distance of 2.2 Å. Any CH⋯π interactions in the second host–guest arrangement can be considered to be very long (Fig. 5B),9 and as a result there is no evidence of analogous HNH⋯OCO H-bonding with the calixarene upper-rim. Rather the H2-AP cation forms an HNH⋯O H-bonding interaction with a water of crystallisation with an NH⋯O distance of 2.1 Å.
Symmetry expansion of the asymmetric unit around the upper-rim of both calixarenes reveals that, irrespective of the degree of cavity occupation by the H2-AP guests described above, formation of H-bonded head-to-head dimers akin to those found in 5 occurs via formation of the targeted heterosynthon.7 In both cases this is facilitated by analogous HNH⋯OCO and NH⋯OCO H-bonding interactions as shown in Fig. 6 (capsule shown for expansion of the arrangement shown in Fig. 5B). There are two NH⋯OCO hydrogen-bonding interactions between both H-bonded head-to-head dimers with respective H[90]⋯O[6]s.e. and H[97]⋯O[22]s.e. distances of 1.8 and 1.9 Å. Additionally there are two HNH⋯OCO H-bonding interactions with respective H[95A]⋯O[5] and H[10A]⋯O[20] distances of 2.0 and 1.9 Å.
Five of the remaining H2-AP cations in the asymmetric unit (including one of which is disordered over two positions) interact with upper-rim CO2− groups via one HNH⋯OCO and one NH⋯OCO H-bonding interaction in each case. The NH⋯OCO H-bonding interactions have distances ranging from 1.7–1.9 Å, while the HNH⋯OCO interactions range from 1.9–2.0 Å (Fig. 5). The final H2-AP cation in the asymmetric unit interacts with the remaining upper-rim CO2− group via only one NH⋯OCO H-bonding interaction with an H[118]⋯O[10] distance of 1.7 Å (Fig. 5A). The additional solvent of crystallisation (MeOH/H2O) forms a wide range of H-bonding interactions, but inspection shows that none appear to dictate extended assembly in an influential manner (as is the case for the cationic H2-AP template). Examination of the extended structure of 6 reveals that the components assemble as capsules within a wave-like bi-layer motif as shown in Fig. S3.†
As stated above, the average closest distance between C atoms of upper-rim CO2H groups in 3 (when crystallised in neutral form from Py or the picolines) was found to be ~4.1 Å.4e Examination of the analogous distances between C atoms of the upper-rim CO2− groups in 6 reveals that these are significantly greater with respective C[41]⋯C[43] and C[85]⋯C[87] distances of ~6.7 and ~7.1 Å (average distance of ~6.93 Å, Fig. 7).
Fig. 7 Increase in the average distance between proximal upper-rim carbon atoms in neutral and tetra-anionic 3 (in 6). Hydrogen atoms omitted for clarity. |
Single crystals of the salt (7) formed between 4 and 2-AP were found to be in a monoclinic cell and structure solution was performed in the space group C2/c.† The asymmetric unit in 7 comprises one half of a molecule of 4 (with upper-rim CO2H groups deprotonated) and two 2-AP molecules (both of which are protonated, Fig. 8).
The most noticeable feature upon inspection is that the H2-AP cations do not occupy the cavity presented by the calixarene, nor do they force access within this particular structure. One H2-AP cation in 7 forms the targeted heterosynthon7 with the splayed symmetry unique upper-rim calixarene CO2− group via one NH⋯OCO and one HNH⋯OCO H-bonding interaction; this occurs with respective H[25]⋯O[3] and H[31A]⋯O[4] distances of 1.9 Å and 1.7 Å. The remaining H2-AP cation is disordered over two positions and was modelled at 50% occupancy in each. In one position this interacts with the pinched upper-rim calixarene CO2− group via one NH⋯OCO and one HNH⋯OCO hydrogen-bonding interaction; this occurs with respective H[113]⋯O[5] and H[10C]⋯O[6] distances of 1.9 Å and 2.5 Å. Symmetry expansion of the asymmetric unit around the other position reveals two HNH⋯OCO hydrogen-bonding interactions between the NH2 group on the H2-AP cation and both the splayed and pinched upper-rim CO2− groups on the half-calixarene; this occurs with H[10A]⋯O[6] and H[10B]⋯O[3] distances of 2.8 and 2.3 Å. Examination of the extended structure reveals that the components pack in an anti-parallel bi-layer array as shown in Fig. S4.†
The average closest distance between C atoms of upper-rim CO2H groups in 4 (when crystallised in neutral form from Py or the picolines) was found to be ~3.8 Å. Symmetry expansion of the asymmetric unit around the half calixarene in 7 reveals that the proximal upper-rim s.e. carbon atoms are separated by a distance of ~4.8 Å, representing a significant increase in the size of the cavity present (Fig. 9). Given that cavity occupation by a H2-AP cation is not observed, we propose that this may arise from a combination of upper-rim CO2− charge repulsion and intermolecular interactions between neighbouring cations; this is difficult to state for the latter as there is disorder present in this region of the structure.
Fig. 9 Increase in the average distance between proximal upper-rim carbon atoms in neutral and tetra-anionic 4 (in 7). Hydrogen atoms omitted for clarity. |
Footnotes |
† Electronic supplementary information (ESI) available: Crystallographic Information Files (CIFs) for 5–7 and additional figures for structural description and powder X-ray diffraction. CCDC 971748–971750. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c3ce42523a |
‡ Compounds 1–4 were prepared according to literature procedure.4 Synthesis of 5: compound 1 (71 mg, 0.11 mmol) was suspended in methanol (3 ml) and excess 2-aminopyridne (309 mg, 3.3 mmol) was added. The mixture was then heated gently until the suspension became a clear solution. Slow evaporation of the solution over several hours afforded colourless single crystals suitable for diffraction studies in near-quantitative yield. Removal from the mother liquor, followed by drying and powder diffraction studies, showed that the crystals were sensitive to this procedure via significant differences in calculated vs. observed powder patterns. As this was the case three unit cell checks were run on single crystals taken from the sample vial in order to confirm bulk purity. These consistently corresponded to the single crystal parameters listed below for 5. Synthesis of 6: an analogous procedure to that followed for 5 was undertaken, using an equimolar amount of 3 as a starting material and an analogous excess ratio of 2-AP. Slow evaporation of the solution over several hours again afforded single crystals suitable for diffraction studies in near-quantitative yield. Synthesis of 7: an analogous procedure to that followed for 5 was undertaken, using an equimolar amount of 4 as a starting material and an analogous excess ratio of 2-AP. Slow evaporation of the solution over several hours again afforded single crystals suitable for diffraction studies in near-quantitative yield. Removal from the mother liquor, followed by drying and powder diffraction studies, showed that the crystals were stable towards solvent loss via agreement between calculated and observed powder patterns (Fig. S5†). General crystallographic details: data for 5 and 7 were collected on a Bruker Apex II CCD Diffractometer operating at 100(2) K with synchrotron radiation (λ = 0.77490 Å). Data for 6 were collected on a Bruker Apex II CCD Diffractometer operating at 100(2) K with Mo-Kα radiation (λ = 0.71073 Å). Crystal data for 5 (CCDC 971748): C59H67N8O14.5, M = 1120.21, colourless block, 0.11 × 0.06 × 0.04 mm3, monoclinic, space group P21/n, a = 12.2773(9), b = 28.901(2), c = 15.6350(12) Å, β = 93.101(2), V = 5539.5(7) Å3, Z = 4, 2θmax = 50.4°, 34609 reflections collected, 7704 unique (Rint = 0.0692). Final GooF = 1.011, R1 = 0.0505, wR2 = 0.1342, R indices based on 5616 reflections with I > 2σ(I) (refinement on F2). Crystal data for 6 (CCDC 971749): C130.65H167.30N16O34, M = 2505.90, colourless block, 0.40 × 0.40 × 0.30 mm3, triclinic, space group P, a = 16.5671(14), b = 19.7029(17), c = 20.3946(18) Å, α = 87.763(4), β = 84.240(4), γ = 77.864(3)°, V = 6474.5(10) Å3, Z = 2, 2θmax = 44.3°, 66296 reflections collected, 15780 unique (Rint = 0.0360). Final GooF = 1.893, R1 = 0.0809, wR2 = 0.2388, R indices based on 12285 reflections with I > 2σ(I) (refinement on F2). Crystal data for 7 (CCDC 971750): C68H80N8O12, M = 1201.40, colourless block, 0.12 × 0.06 × 0.01 mm3, monoclinic, space group C2/c, a = 13.1086(4), b = 38.2571(17), c = 12.9509(6) Å, β = 99.220(2), V = 6410.9(5) Å3, Z = 4, 2θmax = 55.3°, 34712 reflections collected, 7377 unique (Rint = 0.1098). Final GooF = 1.389, R1 = 0.1289, wR2 = 0.2471, R indices based on 3229 reflections with I > 2σ(I) (refinement on F2). |
This journal is © The Royal Society of Chemistry 2014 |