Silke M.
Bauer
,
Matthias
Gehringer
and
Stefan A.
Laufer
*
Department of Pharmaceutical and Medicinal Chemistry, Institute of Pharmaceutical Sciences, Eberhard Karls University of Tuebingen, D-72076 Tuebingen, Germany. E-mail: stefan.laufer@uni-tuebingen.de; Fax: +49-7071-295037; Tel: +49-7071-2978788
First published on 5th August 2014
The availability of a robust, precise and cost-efficient test system is the prerequisite for the performance of any medicinal chemistry program, especially in an academic environment. For the identification of novel Janus Kinase 3 inhibitors and determination of structure–activity relationships, a direct enzyme-linked immunosorbent assay was developed. Being applicable in a standard laboratory, the main advantage over existing methods is the basic equipment requirement as this assay does not need special handling originating from the use of cell cultures or radiometric readout. In contrast to earlier methods relying on two-step procedures, our assay uses a single peroxidase conjugated antibody to quantify and detect substrate phosphorylation. This optimized assay features a limit of detection of 0.032 μg mL−1, a wide dynamic range of 0.638 OD units and an appropriate Z′ factor of 0.66. The determined IC50 value for Tofacitinib was 3.5 ± 0.6 nM (n = 18). A detailed assay protocol custom-tailored for the JAK3 kinase domain and a step-by-step manual for optimizing specific assay conditions are presented. This ELISA primarily addresses researchers within the academic setting facing the task to identify lead structures and explore structure–activity relationships of JAK3 inhibitors at reasonable costs.
Several inhibitors of JAK1 and/or JAK2 as well as pan-JAK inhibitors are currently under clinical investigation for treatment of inflammatory disorders like rheumatoid arthritis (RA) and autoimmune diseases such as Crohn's disease and psoriasis. Recently, the pan-JAK inhibitor Tofacitinib has been approved by the US Food and Drug Administration (FDA) for its application in patients with severe RA inadequately responding to methotrexate.4 However, the European Medicines Agency (EMA) refused the marketing authorization of Tofacitinib in 2013 due to an increased risk for the occurrence of serious infections among other severe side effects.5
In contrast to the other JAK family members, the expression of JAK3 is restricted to the hematopoietic tissue where it exclusively associates with cytokine receptors bearing the common gamma-chain (γc) subunit, enabling JAK3 to specifically operate in immune cells. Consequently, JAK3 represents an attractive target for immunosuppression with limited side effects. Nevertheless, no selective JAK3 inhibitor is available for therapy so far and there is a lack of sufficiently characterized compounds with a distinct selectivity profile. Despite its poor selectivity within the JAK family Knapp et al. suggested the pan-JAK inhibitor Tofacitinib as a high-quality chemical probe for JAK3.6 To evaluate the JAK3 activity of our Tofacitinib-derived compound library,7 we modified, adapted and optimized a general enzyme-linked immunosorbent assay (ELISA) for the detection of protein tyrosine kinase activity previously established by Lázaro et al.8 Earlier published non-cellular JAK3 assays were based on radiometric formats or depended on multi-step procedures using expensive reagents. In contrast, our protocol is operationally simple, robust, and performable at a low cost making it a useful tool for routine screening of JAK3 inhibitors, especially in an academic environment. The ELISA reported herein allows the determination of inhibitory potencies in the low nanomolar range and the IC50 values obtained were subsequently confirmed by commercial radiometric and cellular assays. As a result of our research in this area, we recently described a new class of highly potent tricyclic JAK inhibitors with superior selectivity compared to Tofacitinib.9
In the general assay procedure reported by Lázaro et al., an artificial synthetic polypeptide consisting of L-glutamic acid and L-tyrosine in random distribution with a molar ratio of 4:
1 of glutamic acid to tyrosine is adsorbed to the wells of the assay plate. In the presence of tyrosine kinase and ATP, the synthetic polypeptide is phosphorylated on its tyrosine residues while ADP is generated. The amount of the phosphorylated kinase substrate directly correlates with kinase activity. The comparison of the maximum phosphorylation level with the phosphorylation degree achieved when the JAK3 kinase reaction is carried out in the presence of different inhibitor concentrations allows the determination of IC50 values.
For detection, Lázaro's protocol applies a two-step procedure. As a primary antibody, a monoclonal mouse anti-phosphotyrosine antibody is used while a goat anti-mouse immunoglobulin G (IgG) antibody labeled with peroxidase serves as a secondary antibody. This method requires two incubation steps, one for each antibody reaction. In contrast, our novel protocol uses a single monoclonal anti-phosphotyrosine antibody conjugated with peroxidase for directly detecting the degree of phosphorylation of the synthetic polypeptide, as illustrated in Fig. 1.
The dynamic range is expressed by the term [μp − μn].10
The variables of the equation refer to the following abbreviations: p: OD450 of positive control, n: OD450 of negative control, σ: standard deviation of OD450, and μ: mean of OD450.
The following abbreviations are used for the variables of the equation: σ: standard deviation of the response and S: slope of the calibration curve.
A KB containing 100 mM HEPES, 10 mM MgCl2, 4 mM dithiothreitol, 0.1 mM Na3VO4, and 1.4 μM ATP was prepared in ultra-pure water and the pH was adjusted to 6.8–6.9 by dropwise addition of 1 M HCl. This KB solution served as a medium for both, preparation of the JAK3 enzyme solution and dilution of test compounds/reference. The enzyme solution contained a final concentration of 60 ng mL−1 of JAK3. This enzyme solution was apportioned into Eppendorf reaction tubes in an ice-cooled rack. Dilution of the compounds was carried out in a two-step procedure. First, the 10 mM stock solutions of samples/reference were serially diluted in KB to a 100-fold excess of the final assay concentration via 10-fold dilution steps. As a second step of the dilution procedure, the respective volume of the 100-fold pre-dilutions was added to the JAK3 enzyme solution in Eppendorf reaction tubes. Thereby, final assay concentrations of samples and Tofacitinib were obtained.
It must be pointed out that vortexing of solutions containing JAK3 should be performed gently and only for few seconds as it significantly reduces the kinase activity leading to very shallow and non-sigmoid shaped inhibition curves.
Subsequently, all wells of the assay plate were rinsed three times with a PBS-containing wash bottle. Prior to the kinase reaction step, the remaining free binding sites were blocked by treatment with BB for 12 minutes at room temperature. After completion of the blocking step, the BB was discarded and the plate was rinsed three times with PBS containing 0.1% Tween-20 (polyoxyethylene (20) sorbitan monolaurate) (PBST) using a wash bottle. For draining, the plate was left upside down for 5 minutes on an absorptive surface. Potentially existing air bubbles originating from the washing step were removed by patting the assay plate carefully on a soft and absorptive surface. For the kinase reaction, 50 μL of the diluted samples and Tofacitinib were transferred from the Eppendorf reaction tubes to the corresponding wells of the assay plate. For positive control (STIM), indicating maximum phosphorylation, 50 μL of JAK3 solution were pipetted into the respective wells. For determination of NSB, 50 μL of plain KB were added into the respective wells. The pipetting of the kinase containing testing solutions to the assay plate was performed carefully but as quickly as possible (max. 5 minutes) since the degree of phosphorylation and therefore the detected kinase activity is time-dependent. During the kinase reaction, the plate was covered with a lid and incubated for one hour at 37 °C, gently shaking at 150 rounds per minute in the incubator. After the kinase reaction, the content of the plate was discarded. The plate was washed three times with PBST, drained and patted following the same procedure as described before.
While the plate was draining, the monoclonal anti-phosphotyrosine–peroxidase conjugated antibody was diluted 1:
60
000 in BB which has been adjusted to pH 6.5. 100 μL of the antibody dilution were pipetted into all wells using an Eppendorf Multipette® plus equipped with a 5 mL Eppendorf Combitip plus®. For incubation of the antibody reaction, the plate was again covered with a lid and incubated as described for the kinase reaction step.
After the last mentioned incubation, the antibody solution was discarded and the assay plate was rinsed with PBST to remove any unbound antibody. The plate was again drained upside down on an absorptive surface and patted as described before.
Finally, 50 μL of the TMB substrate reagent were added into all wells using an Eppendorf Multipette® plus equipped with a 2.5 mL Eppendorf Combitip plus® and left for 5 minutes in the dark while a blue color developed. The color reaction was stopped by pipetting 25 μL of 1 M sulphuric acid into each well using the afore-mentioned pipette leading to a color change from blue to yellow. The OD was read out in an ELISA microplate reader at 450 nm.
The precision of this ELISA method employing a JAK3 concentration of 60 ng mL−1 was verified by a low standard deviation of 0.03 OD units.
In a subsequent step, the appropriate working dilution for the peroxidase-labelled monoclonal anti-phosphotyrosine antibody was investigated (Fig. 2B). Therefore, antibody dilutions were added to the wells with positive and negative controls to determine the respective maximum- and the NSB signal magnitude. NSB is caused by binding of the antibody to the non-phosphorylated polypeptidic kinase substrate or other interferents. An OD450 below 0.1 was considered appropriate. The best signal-to-noise ratio was achieved with an antibody dilution of 1:
60
000.
The Km value for ATP was determined by titrating ATP concentrations between 0.1 μM and 1000 μM while keeping all other assay parameters constant (Fig. 2D). The rate of reaction in the presence of a large excess of ATP (1000 μM) was considered maximal and consequently defined as the maximum degree of phosphorylation (100%). According to Copeland et al., special care needs to be taken when setting substrate concentrations for enzymatic reactions involving more than one substrate in order to develop a balanced assay system.12 As the assay is based on a bisubstrate enzyme reaction, the assay plate was coated using 100 μg mL−1 of the synthetic polypeptide ensuring saturation conditions for determination of the apparent Km value for ATP, which was found to be 0.7 μM. As reported in previous work of Goettert et al., an ATP concentration of maximum twice the Km value is acceptable and should not be exceeded.13 Applying 1.4 μM ATP (twice the Km value) provided a good assay signal magnitude and assay stability on the one hand, and the necessary sensitivity for identification of ATP-competitive kinase inhibitors on the other hand.
The Z′ factor is a common tool to evaluate the quality of an assay. According to Zhang et al., an assay with a Z′ factor between 0.5 and 1 is considered an excellent assay.10 A Z′ factor of 0.66 confirmed this ELISA with its optimized settings as suitable for routine inhibitor screening. For further evaluation of the developed ELISA method, the LOD was determined according to the recommendations of the International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH) by linear regression of a calibration curve (R2 0.997).11 The analytical performance of the optimized assay settings was confirmed with an LOD of 0.032 μg mL−1 phosphorylated polypeptidic kinase substrate and a dynamic range of 0.638 OD units.
Within the structural class of N-substituted 7H-pyrrolo[2,3-d]pyrimidines, Tofacitinib and two less potent inhibitors (1 and 2 in Table 1) described by Flanagan et al. were tested applying the optimized assay parameters. The resulting inhibition curves were steep and sigmoid-shaped. For the reference Tofacitinib and compound 1/2, IC50 values of 3.5 ± 0.6 nM (n = 18), 154 ± 0.04 nM (n = 3) and 311 ± 0.03 nM (n = 3) were obtained. These IC50 values were compared with the IC50 values previously reported by Flanagan et al., even though it must be emphasized that direct comparison of IC50 values determined in different assays is precarious.14 However, IC50 values determined with our optimized ELISA correlate reasonably with those reported by Flanagan et al. (Table 1).
In summary, the ELISA protocol established by Lázaro et al. was transformed from an indirect to a direct format, as a second incubation step with a secondary detection antibody becomes redundant when the primary antibody is directly labelled with the detection enzyme. Moreover, potential cross reactivity arising from a secondary detection antibody that curtails the specificity of the ELISA response and therefore the accuracy of the readout data is avoided. Application of a single monoclonal detection antibody is less likely to cause interference with other than the target epitope. Apart from inter- and intra-assay signal consistency, non-specific signals are evaded and therefore the assay sensitivity and precision is improved.
Due to its sensitivity, this ELISA allows the investigation of SARs even within a series of structurally similar inhibitors.9
For exploration of selectivity, the extension to other members of the JAK family is conceivable in the same format. Furthermore, this assay protocol is suitable to be transferred to high-throughput screening campaigns using automated robotic instrumentation, making it applicable for the measurement of large numbers of samples at a time. Thus, it might also attract the attention of industrial researchers.
ATP | Adenosine-5′-triphosphate |
BB | Blocking buffer |
BSA | Bovine serum albumin |
DMSO | Dimethyl sulfoxide |
EMA | European medicines agency |
ELISA | Enzyme-linked immunosorbent assay |
FDA | Food and drug administration |
HEPES | (2-[4-(2-Hydroxyethyl)piperazin-1-yl]ethanesulfonic acid) |
ICH | International conference on harmonisation of technical requirements for registration of pharmaceuticals for human use |
IgG | Immunoglobulin G |
JAK | Janus kinase |
JAK3 | Janus kinase 3 |
KB | Kinase buffer |
K m | Michaelis constant |
LOD | Limit of detection |
NSB | Nonspecific binding |
OD | Optical density |
OD450 | Optical density at 450 nm |
PBS | Phosphate-buffered saline |
PBST | PBS containing 0.1% Tween-20 |
R 2 | Coefficient of determination |
RA | Rheumatoid arthritis |
SARs | Structure–activity relationships |
TMB | 3,3′,5,5′-Tetra-methylbenzidine |
Tween-20 | Polyoxyethylene (20) sorbitan monolaurate |
γ c | Common gamma chain interleukin receptor (IL-2RG) |
This journal is © The Royal Society of Chemistry 2014 |