Alleyn T.
Plowright
*a,
Peter
Barton
b,
Stuart
Bennett
b,
Alan M.
Birch
b,
Susan
Birtles
b,
Linda K.
Buckett
b,
Roger J.
Butlin
b,
Robert D. M.
Davies
b,
Anne
Ertan
c,
Pablo Morentin
Gutierrez
b,
Paul D.
Kemmitt
b,
Andrew G.
Leach
b,
Per H.
Svensson
cd,
Andrew V.
Turnbull
b and
Michael J.
Waring
b
aCardiovascular and Gastrointestinal Innovative Medicines Unit, AstraZeneca R&D, Pepparedsleden 1, Mölndal, 43183, Sweden. E-mail: alleyn.plowright@astrazeneca.com; Tel: +46 (0)31 7761572
bCardiovascular and Gastrointestinal Innovative Medicines Unit, AstraZeneca R&D, Mereside, Alderley Park, Cheshire, SK10 4TG, UK
cMedicines Evaluation, AstraZeneca R&D, 151 85 Södertälje, Sweden
dDepartment of Applied Physical Chemistry, Royal Institute of Technology, SE-10044, Stockholm, Sweden
First published on 17th August 2012
A novel series of potent diacylglycerol acyl transferase 1 inhibitors was developed from the clinical candidate AZD3988. Replacement of the phenyl cyclohexyl-ethanoate side chain with substituted oxy-linked side chains to introduce changes in shape and polarity, reduce lipophilicity and mask the hydrogen bond donors with internal hydrogen bond acceptors led to improvements in solubility, unbound clearance and excellent selectivity over the related enzyme acyl-coenzyme A:cholesterol acyltransferase 1. A comparison of the small molecule crystal structures of compound 4 and compound 28 is described. Compounds in this series have good ADMET properties and provide an exposure-dependent decrease in circulating plasma triglyceride levels in a rat oral lipid tolerance test.
Fig. 1 Some DGAT-1 inhibitors. |
As part of the ongoing research to develop the oxadiazole amide series, variations in this fragment were sought to provide structural variation and optimise the compounds further. Despite 1 displaying many positive criteria a potential area of improvement was in the physicochemical properties (thermodynamic solubility of crystalline 1 = 2 μM).12 Whilst 1 appeared to have good selectivity over its closest structural homologue, acyl-coenzyme A:cholesterol acyltransferase 1 (ACAT-1),13 with an ∼40 fold in vitro enzyme selectivity, it was found to cause adrenal toxicities in dog toxicology studies which may impact clinical utility.14 Hence greater selectivity towards ACAT-1 was sought. Aqueous solubility is driven by a number of factors including lipophilicity and solid-state interactions in the crystal lattice. Strategies to explore both of these aspects were devised and herein our continued investigations to improve compound properties to provide an alternative series of acidic DGAT-1 inhibitors are reported.
Scheme 1 Synthesis of oxy-linked phenyl derivatives. Reagents and conditions: (a) NaH (60% in oil), DMF, 0 °C to rt; (b) 6, DMF, 110 °C; (c) Pd (10% on C), H2, EtOH:THF (1.5:1); (d) methyl oxalylchloride, pyridine, CH2Cl2; (e) N2H4·H2O, EtOH; (f) (i) R3C6H4NCS, DMA, (ii) EDC, 60 °C; and (g) LiOH, THF:H2O:MeOH (1:1:2), 35 °C. |
Scheme 2 Synthesis of oxy-pyridyl derivatives. Reagents and conditions: (a) NaH (60% in oil), DMF, 0 °C to rt; (b) 10, DMF, 100 °C; (c) if R1 = COOH, then HCl, MeOH; (d) benzophenone imine, PdOAc2, Cs2CO3, (S)-(−)-2,2′-bis(diphenylphosphino)-1,1′-binaphthyl, THF, 60 °C; (e) Pd (10% on C), H2, ethyl acetate; (f) 13, diisopropylazodicarboxylate, PPh3, THF, 180 °C, microwave; (g) for 28 where R2 = 6-Cl, Bu4NCN, DMSO, hexafluorobenzene, 0 °C to rt; and (h) Pd (10% on C), H2, ethyl acetate. |
The oxy-linked pyridyl derivatives were synthesized in one of the two ways (Scheme 2). Firstly, treating the anion of 5 with the substituted 2-fluoro-5-bromopyridine in an analogous fashion to the first step in Scheme 1 gave the 2-alkoxy-5-bromopyridine 11. Buchwald coupling of 11 with benzophenone imine under palladium catalysis followed by hydrogenation of the imine gave the required pyridylamine 12. Alternatively, performing a Mitsunobu reaction between the cyclohexanol 5 and the substituted 2-hydroxypyridine 13 using diisopropylazodicarboxylate and triphenylphosphine gave the intermediate 14 which was hydrogenated as before to give the required pyridylamine 12. In the case of compound 28, where a fluoro-substituent was required ortho to the pyridyl nitrogen, the Mitsunobu reaction was performed using 6-chloro-5-nitropyridin-2-ol (i.e. R2 = 6-Cl in 13) to give 14. The 6-chloro group was then converted to the 6-fluoro group using tetrabutylammonium cyanide and hexafluorobenzene in DMSO, which upon hydrogenation gave the pyridylamine intermediate 12 with the required substitution pattern. The pyridylamines 12 were transformed into the final oxadiazole acids 9 using essentially the same chemistry as described in steps (d)–(g) in Scheme 1.
R1 | R2 | hDGAT-1 IC50a (μM) | hACAT-1 IC50a (μM) | Log D | Sol.b (μM) | LLE | |
---|---|---|---|---|---|---|---|
a All IC50 values reported are mean values from ≥2 experiments. b Measured by incubation of crystalline materials for 24 h at pH 7.4.12 | |||||||
1 | — | — | 0.002 | 0.08 | 3.0 | 2 | 5.6 |
15 | 3,4-diF | 0.14 | — | 2.3 | 6 | 4.6 | |
16 | 3,4-diF | 0.004 | 1.1 | — | 3 | — | |
17 | 4-F | 0.005 | 1.8 | 1.2 | 5 | 7.1 | |
18 | 4-CN | 0.018 | 14.3 | 1.4 | — | 6.3 | |
19 | 2,4,5-triF | 0.007 | 0.45 | 1.9 | 43 | 6.2 | |
20 | 2,4,5-triF | 0.008 | 1.3 | 1.9 | 27 | 6.2 |
Fig. 2 Two views of the crystal structure of the acetic acid co-complex of compound 4. Panel (a) shows a view from above the plane of adjacent molecules and panel (b) shows how these planes stack. |
The intermolecular interactions revealed by the crystal structure include (i) the amide NH interacting with the carbonyl of an adjacent amide; (ii) the aniline NH interacting with one of the oxadiazole nitrogens and (iii) the carboxylate residue in 4 forming a tight dimer with the acetic acid also present in the structure. The quantum mechanical calculations can also be used to investigate the strengths of intermolecular interactions. In particular, Kenny has shown that electrostatic potential calculations correlate closely with observed values of log Kα and log Kβ which are experimental measures of a molecule's hydrogen bonding capacity.20,21 These calculations reveal that the same features that drive the conformational preference for the molecule also influence its ability to interact with other molecules. The conformation of the same model compound described above that has fluorine oriented towards the NH has a computed log Kα for the NH of 2.02 while the same compound lacking the ortho fluoro has a log Kα of 2.24. Hence, any through-bond polarizing effect of fluorine is counteracted by a through-space masking of the dipole of the N–H bond by that of the C–F bond. The alternative view of the crystal structure in Fig. 2b shows how the molecules stack on top of one another and reveals that the various layers alternate the orientation of the molecule and that the molecules are slightly twisted with respect to one another indicating that there are no significant stacking interactions between the layers.
Hence, the initial design strategies to improve physicochemical properties were focused on reducing the overall lipophilicity and disrupting the intricate framework of intra- and intermolecular hydrogen bonding observed in the crystal lattice of 4 by (i) introducing changes in shape and polarity into the side chain to reduce the efficiency of crystal packing; (ii) reducing the overall lipophilicity of the phenyl cyclohexyl-ethanoate side chain, whilst maintaining the high ligand lipophilicity efficiency (LLE) of 1; and (iii) masking the hydrogen bond donors which are required for DGAT-1 inhibition in this series with internal hydrogen bond acceptors to break up the hydrogen bonding network in the crystal lattice to increase solubility. Compounds were tested in vitro for inhibition towards recombinant human DGAT-1 (hDGAT-1).5 To ensure selectivity, inhibition of human ACAT-1 (hACAT-1) and human DGAT-2, which although serving the same function is only distantly related to DGAT-1 structurally,22 was monitored to find opportunities for enhancing selectivity. Solubility was measured on crystalline materials.12
Initial attempts to introduce changes in the shape and increase the polarity in the side chain were made through introduction of an oxygen atom. The phenyl-trans-cyclohexyl unit in 1 is linear and relatively flat and therefore packs well in the lattice. The introduction of an oxygen linker completely changes the shape to the one that packs less efficiently. This can be exaggerated further by changing from a trans-configuration in which both substituents can be placed in equatorial positions to a cis-configuration in which one of the substituents must become axial. Axially substituted cyclohexanes have a shape that tessellates less well and so might reduce the efficiency of packing in the lattice. Initially this was attempted on the bis-phenyl side chain substituted with a carboxylic acid in the ortho-, meta- or para-position. Whilst good hDGAT-1 inhibition was observed with both the meta- (15) and para-derivatives (data not shown) the solubility of both remained poor. In addition, 15 showed high rat plasma protein binding (Fu < 0.01%) and high intrinsic metabolic clearance in rat hepatocytes (Clint = 22 μL min−1 mg−1) so was not pursued. Introduction of an oxy-link between the phenyl and cyclohexyl rings of 1 to provide the cis-cyclohexyl derivative 16 proved more beneficial and excellent inhibition of hDGAT-1 was achieved. Compound 16 also showed excellent selectivity against hACAT-1 (280 fold).
Combining the cis-cyclohexyloxy side chain with alternative aniline substitution on the oxadiazole ring was explored extensively and a large variety of substitution was tolerated with a similar SAR to what was observed in the initial series.6 As increasing molecular weight and lipophilicity would be detrimental to physicochemical properties the focus was primarily on small variations of aniline (Table 1). Replacement of the meta-fluoro substituent of 16 with a hydrogen atom to give the 4-fluoro derivative 17 gave excellent inhibition of hDGAT-1 with a corresponding reduction in lipophilicity and hence improvement in LLE. However, the solubility was still poor. Substitution on aniline with a 4-CN group (18) led to reduced potency versus hDGAT-1 so was not pursued further.
Alternatively, in an attempt to disrupt the intermolecular hydrogen bond between the hydrogen bond donor of the aniline and an oxadiazole nitrogen acceptor in a similar fashion to that shown with 4 (Fig. 2), a fluoro substituent was added to the aniline ring ortho to the anilino-NH to give the 2,4,5-trifluoro derivative 19. Excellent inhibition of hDGAT-1 was achieved, the fraction unbound in rat plasma protein binding showed a 10-fold increase (0.4%) compared with 1 and solubility was increased to 43 μM. The corresponding trans-derivative, 20, had the same potency against hDGAT-1 but interestingly was 3-fold less potent than the cis-derivative against hACAT-1.
Attempts were made to reduce the lipophilicity further (Table 2). These included reducing the size of the cyclohexyl ring to the cyclobutyl, which led to a 10-fold reduction in potency against hDGAT-1 (data not shown), and introducing an additional heteroatom into the side chain by replacing the phenyl ring with a pyridyl ring as exemplified with 21. Compound 21 maintained good potency and achieved excellent selectivity versus hACAT-1 as well as improved solubility. The final strategy to improve solubility by disrupting the hydrogen bonding framework was to replicate the effect of the fluorine atom adjacent to the aniline NH and also mask the amide hydrogen bond donor with an ortho-fluoro substituent. This hypothesis was tested by synthesising the ortho-fluoro derivative 22. Compound 22 gave excellent inhibition of hDGAT-1, high LLE and gratifyingly a further small, but consistent, increase in solubility. Interestingly, 22 also had good potency against hACAT-1. This was similar to the des-fluoro derivative 19 suggesting that the 2-fluoro substituent in the aniline ring was good for hACAT-1 activity. As observed with previous examples, the corresponding trans-derivative 23 had significantly reduced potency towards hACAT-1. Introduction of a fluoro group into the meta-position relative to the amide (24) gave no beneficial effect on either hDGAT-1 potency or solubility.
R1 | R2 | hDGAT-1 IC50a (μM) | hACAT-1 IC50b (μM) | Log D | Sol.b (μM) | LLE | |
---|---|---|---|---|---|---|---|
a All IC50 values reported are mean values from ≥2 experiments. b Measured by incubation of crystalline materials for 24 h at pH 7.4.12 | |||||||
21 | 3,4-diF | 0.005 | 6.5 | 1.9 | 49 | 6.5 | |
22 | 2,4,5-triF | 0.003 | 0.31 | 1.9 | 69 | 6.5 | |
23 | 2,4,5-triF | 0.015 | 6.5 | 1.8 | 13 | 6.0 | |
24 | 2,4,5-triF | 0.008 | 0.86 | 2.3 | 11 | 5.8 | |
25 | 3,4-diF | 0.005 | 5.6 | 1.4 | 23 | 6.8 | |
26 | 3,4-diF | 0.007 | 1.5 | 2.2 | 4 | 6.0 | |
27 | 3,4-diF | 0.003 | 4.8 | 1.9 | 15 | 6.6 | |
28 | 2,4,5-triF | 0.004 | 1.1 | 1.8 | 2200 | 6.6 | |
29 | 2,4,5-triF | 0.006 | 1.3 | 1.6 | 240 | 6.6 |
Further profiling revealed that as the lipophilicity was reduced over one log unit compared to the starting point 1 then the impact on both permeability and clearance would be of paramount importance (Table 3). Introduction of an oxy-link in combination with the 2,4,5-trifluoroanilino moiety, as in 19, led to a reduction of log D to 1.9 and still provided good permeability as measured in MDCK cells. Additional fluoro-substitution in the side chain, for example, 22, also gave high permeability.23 This was hypothesised as both hydrogen bond donors could now be masked through intramolecular hydrogen bonds. However, introduction of an additional heteroatom into the side chain such as the pyridyl derivative 21 gave a significant reduction in permeability, despite the compound having the same log D as 19 and 22. Further reduction of the lipophilicity of the side chain led to a significant reduction in permeability as exemplified with 25 (MDCK Papp A-B 1.1 × 10−6 cm s−1). The clearance of the compounds in human hepatocytes was low in most cases. However, differences emerged in in vivo DMPK experiments. The oxy-linked phenyl derivatives 19 and 22 had excellent DMPK parameters in rat including low clearance and high bioavailability. The clearance in the dog was significantly higher, particularly after normalizing for plasma protein binding to give the unbound clearance. This was in contrast to the pyridyl derivative 21, which had significantly higher clearance in the rat mainly due to increased renal clearance. In the dog the clearance, in particular the unbound clearance, was significantly lower. In summary, the cis-fluorophenyl derivatives 19 and 22 offered improvements in solubility and permeability and an excellent rat DMPK profile, whereas the pyridyl derivative 21 offered advantages in selectivity against hACAT-1 and lower unbound clearance in the dog.
MDCK Papp A-B 10−6 (cm s−1) | Hu Hep Clint (μL min−1 mg−1) | Rat Cl (Clu) (mL min−1 kg−1) | Rat F% | Dog Cl (Clu) (mL min−1 kg−1) | Dog F% | |
---|---|---|---|---|---|---|
a Measured using Caco-2 cells. | ||||||
19 | 11 | <2 | 1.1 (470) | 115 | 11 (920) | 23 |
21 | 2.0 | <2 | 7.4 (740) | 33 | 4.7 (130) | 60 |
22 | 33a | <2 | 0.4 (200) | 85 | 6.5 (1700) | 76 |
26 | 5.1 | <2 | 0.7 (230) | 82 | 2.3 (100) | 35 |
27 | 16 | <2 | 3.6 (600) | 78 | 5.1 (300) | 84 |
28 | 15 | <2 | 1.8 (300) | 100 | 4.6 (200) | 61 |
To achieve a combination of these properties two strategies were undertaken. Firstly, slightly increasing the lipophilicity of the pyridyl derivative 21 to increase permeability and reduce renal clearance gave 26 (Table 2). Both excellent potency towards hDGAT-1 and selectivity over hACAT-1 were achieved as well as significantly reducing in vivo clearance in the rat. However, despite a moderate increase in permeability as measured in MDCK cells, solubility was also decreased so the optimal profile was not achieved. The second strategy involved replacing the benzene ring with pyridine in the side chain of 22 to bring the benefits of the pyridyl but with minimal impact on overall lipophilicity. This led to derivatives 27, 28 and 29. All three compounds had excellent potency against hDGAT-1, improved selectivity against hACAT-1 compared with 22 and maintained very low metabolic clearance in human hepatocytes. Moreover, good improvements in both rat DMPK parameters as well as a reduction in unbound clearance in the dog were achieved for 28. In addition, 28 brought together all strategies for improving solubility in this series by introducing shape changes and reducing lipophilicity and attempting to break the interactions in the crystal lattice through introducing heteroatoms and masking the hydrogen bond donors. Gratifyingly 28 achieved excellent solubility balanced with good permeability, which both contribute to the high bioavailability observed in rat and dog DMPK experiments.
To assess the true impact on the interactions existing in the solid state, crystals of 28 were grown which were suitable for X-ray structural determination (Fig. 3).24 The X-ray structure reveals that compared to the structure of 4, the void density has increased from 10.1% of the unit cell to 12.7% of the unit cell,25 commensurate with a decreased packing efficiency. As before, the ortho-fluoro substituent masks the aniline NH but interestingly the amide NH is not masked. Instead, fluorine is twisted away from the NH which ensures that while the NH is a better donor, the pyridyl ring is twisted with respect to the amide and so adopts a shape that packs less well in the solid state. The consequence of all these changes is a much more complex structure in which the plane of adjacent molecules (Fig. 3a) is held together by van der Waals interactions, including some π–π stacking. These planes are in turn held together in a cross-hatched fashion because of the L shape of the molecule which arises because of the axial positioning of the oxy-pyridyl group. Each molecule is involved in a dimeric pairing (Fig. 3b, the light blue and pink molecules) and these dimers then present hydrogen bonding groups that interact with the acids of adjacent molecules. These are difficult to compare to the acid dimers in 4 but the data suggest that this network of interactions contributes less to the lattice energy.
Fig. 3 Two views of the crystal structure of compound 28. Panel (a) shows a view from above the plane of adjacent molecules and panel (b) shows how these planes stack. |
In general, compounds in this series showed no significant activity against human DGAT-2 (e.g.26; IC50 = 28 μM), the hERG encoded potassium channel (e.g.26; IC50 > 30 μM), or the cytochrome P450 enzyme isoforms CYP1A2, CYP2C9, CYP2C19, CYP2D6 and CYP3A4 (e.g.26; all IC50s > 10 μM). Compounds in this series were also tested to confirm in vivo inhibition of DGAT-1 using a rat oral lipid tolerance test.5 Treatment with 26 resulted in an exposure-dependent decrease in circulating plasma triglyceride levels. Fig. 4 shows the relationship between plasma triglycerides and free compound levels in plasma for 26 in this model. PK-PD analysis indicates that the in vivo generated free IC50 (0.2 nM) is in good agreement with the in vitro IC50 in rat microsomes (0.9 nM) and a functional cell assay measuring triglyceride synthesis in the HuTu80 human cell line (4 nM).
Fig. 4 PK/PD analysis showing the relationship between plasma triglycerides (TAG) and free compound levels in plasma for 26 in a rat oral lipid tolerance test. A direct response (Emax) model was used to fit the PK/PD data (see ESI†). |
Footnote |
† Electronic supplementary information (ESI) available: Synthetic details for the preparation of compounds and crystallographic data. CCDC 886319 and 886320. For ESI and crystallographic data in CIF or other electronic format, see DOI: 10.1039/c2md20187a |
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