Jakub
Kaminský
*a,
Miloš
Buděšínský
a,
Stefan
Taubert
b,
Petr
Bouř
a and
Michal
Straka
*a
aInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2., CZE-16610, Praha 6, Czech Republic. E-mail: kaminskj@gmail.com; straka@uochb.cas.cz; Fax: +420-220183-579
bDepartment of Chemistry, Aalto University, P. O. Box 16100, FIN-00076 Aalto, Finland
First published on 19th April 2013
The nuclear magnetic resonance (NMR) spectroscopy combined with theoretical calculations is an important tool for fullerene identification. However, the accuracy of available theoretical methods is often not adequate. Therefore, in this work, different computational aspects needed to simulate realistically chemical shifts in the C70 molecule are investigated by density functional theory (DFT) calculations. The importance of the functional choice, basis set, solvent, and molecular motions was assessed. The solvent was simulated using the implicit conductor-like polarized continuum model. The molecular motions were included via anharmonic corrections and averaging of snapshots obtained from classical and first-principles molecular dynamics (MD) simulations. Comparison to experiment revealed that density functional calculations typically overestimate the 13C NMR chemical shifts. Hybrid functionals, such as BHandH and BHandHLYP, and long-range corrected functionals, such as wB97xd and CAM-B3LYP, give the best results. While the solvent has a minor effect (chemical shift changes by ∼1 ppm), the vibrational and dynamical effects are surprisingly large, causing changes up to 9 ppm. Consideration of the latter was also necessary to explain the observed temperature dependence. While the dynamical corrections for MD performed in vacuum were overestimated, inclusion of the solvent in simulations provided more realistic results. The study thus points out the importance of an appropriate solvent model and a complex approach to the modelling, balancing the static, dynamic and environmental factors.
Identification of fullerenes can be significantly enhanced by calculations of fullerene structures and 13C NMR parameters, typically based on the density functional theory (DFT).5–11 In a review by Heine,12 however, typical accuracy of 13C NMR DFT calculations was estimated to be 2 ppm, which may not be sufficient for larger fullerenes with a denser spacing (<1 ppm) of spectral lines.
To assess the reliability of commonly used methods for calculations of the 13C chemical shift we use the C70 fullerene as a convenient model. It contains five different symmetry-equivalent carbon types (assigned as Ca–Ce in Fig. 1) which cover the range of ∼130–150 ppm spanning to a large part typical fullerene 13C chemical shifts.13 The performance of various density functionals and basis set convergence are analyzed.
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Fig. 1 Symmetry equivalent carbon types in C70. |
In the next stage, we assess the effects of dynamics, temperature, and solvent on the calculated 13C NMR chemical shifts. The effects of solvent are approximated using the conductor-like polarized continuum model (CPCM).14 Several approaches of involving the molecular motion in the computations are explored: averaging snapshots obtained from classical molecular dynamics (MD) and the first-principles molecular dynamics (FPMD) trajectories, and a quantum averaging of anharmonic vibrational corrections.15,16
The nuclear magnetic shielding was calculated with GGA (HCTH,27 BLYP,21,28 OLYP,28,29 BP86,21,22 PBEPBE,30 OPBE,29,30 SV5LYP28,31,32), meta GGA (M06L33), hybrid (B1LYP,34 B3LYP,23 O3LYP,35 X3LYP,36 BHandH/Gaussian09,18 BHandHLYP,18 and B9837), meta GGA hybrid (M06HF38), and range-separated hybrid (CAM-B3LYP,39 wB97xd24) functionals. The list thus enables us to compare the GGA and hybrid functionals, different exchange potentials (e.g. in B1LYP, B3LYP, O3LYP, X3LYP) and various degrees of the involvement of the HF exchange (e.g. BLYP with 0% exchange, B3LYP (20%), and BHandHLYP (50%)). Because common functionals may suffer from unphysical long-range behavior of the non-Coulomb part of exchange, the effect of long-range corrections was also taken into account by involving the CAM-B3LYP39 and wB97xd24 functionals.
The basis set convergence was investigated using the IGLO-II,40 IGLO-III,40 and IGLO-IV41,42 basis sets optimized for calculations of NMR parameters. A set of Jensen's polarization-consistent basis sets, pcS-n, was also tested.43
Calculated isotropic nuclear shielding (σ) was converted to chemical shift (δ) using tetramethylsilane (TMS) as a reference and C60 as a secondary reference, according to formula
δi = σ(C60) − σi(C70) + δ(C60,TMS) |
One of the limitations of anharmonic vibrational corrections performed here is the necessity to use Hartree–Fock approximation which overestimates harmonic frequencies by about 10%.48,49 While DFT provides typically better harmonic frequencies deviating from experiment by only a few percents,50–53 it was not affordable for such extensive calculations on C70. We do not suppose that the relatively small frequency error of the HF method would significantly change the anharmonic corrections added in a perturbation way only.
For vibrational ground state ψn isotropic nuclear magnetic shielding was calculated as
σn = 〈ψn|σ|ψn〉 |
The σ1 and σ2 are the first and second normal mode isotropic shielding derivatives obtained numerically with a differentiation step of 0.2 Å. This parameter was found to be optimal for many systems including fullerenes before.54 Within the second-order degeneracy-corrected perturbational (PT2) scheme46 the wave function is expanded in the harmonic oscillator basis.16
Alternatively, the vibrational configuration interaction (VCI) was used for vibrationally averaged shieldings, where the Hamiltonian was diagonalized in the harmonic oscillator basis functions (|l〉, up to doubly excited states) limited by an interaction parameter
|〈l|V|n〉/(En − El)| ≤ 0.1 |
A third approximation tried was based on the harmonic oscillator limit for energies55 and provided temperature-corrected shielding (TCS) as
σ = σ0 + 0.25σiiexp(−ωi/kT)[1 − exp(−ωi/kT)]−1 |
Table 1 lists the 13C chemical shifts for C70 calculated using the different IGLO-n type basis sets. The IGLO-III results appear converged within 0.2 ppm as compared to the IGLO-IV basis set, which can be considered to be near the basis set limit. Corrections beyond IGLO-IV can be expected to lie below 0.2 ppm.60 Hence the error of the IGLO-III basis set calculations with respect to the basis set limit can be estimated with safe margins to be within 0.4 ppm. With a conservative error estimate of 0.4 ppm for 13C shifts the IGLO-III basis set provides a good compromise between the accuracy and the computational cost. IGLO-IV is recommended if higher accuracy is needed.
Carbon | IGLO-II | IGLO-III | IGLO-IV |
---|---|---|---|
a Chemical shifts were calculated for BP86/def-TZVP optimized geometry. The BP86 functional was used for 13C chemical shifts. | |||
Ca | 153.3 | 154.4 | 154.2 |
Cb | 148.7 | 149.6 | 149.5 |
Cc | 150.0 | 151.2 | 151.0 |
Cd | 147.4 | 148.1 | 148.0 |
Ce | 130.7 | 130.5 | 130.5 |
Following the suggestion of a referee, the basis set convergence was also tested on the set of Jensen's polarization consistent pcS-n basis sets43 known to provide accurate nuclear shieldings.61 The convergence of 13C nuclear shieldings in C60 obtained with pcS-n (n = 0, 1, 2, 3) can be seen in Fig. S1 (ESI†). Table S1 (ESI†) lists the 13C chemical shifts for C70 calculated using different pcS-n (n = 0, 1, 2) basis sets. It is apparent that the IGLO-n basis sets provided faster convergence than pcS-n.
Functional | Ca | Cb | Cc | Cd | Ce | RMSDa (RMSDb) |
---|---|---|---|---|---|---|
a Ref. 13. b This work. c Values using B3LYP/6-31G* taken from ref. 10. Calculations were performed for BP86/def-TZVP optimized geometry and with the IGLO-III basis set. | ||||||
wB97xd | 150.6 | 147.3 | 147.9 | 145.8 | 132.3 | 0.4 (0.4) |
CAMB3LYP | 151.8 | 148.0 | 149.0 | 146.7 | 132.5 | 0.6 (0.7) |
M06L | 152.8 | 148.0 | 149.7 | 146.6 | 130.8 | 0.7 (0.7) |
OPBE | 152.9 | 148.4 | 149.9 | 147.1 | 129.9 | 0.8 (0.8) |
BHandHLYP | 152.7 | 148.6 | 149.9 | 147.0 | 132.7 | 0.8 (0.9) |
BHandH | 152.8 | 148.8 | 150.1 | 147.1 | 132.1 | 0.9 (0.9) |
O3LYP | 153.2 | 148.7 | 150.3 | 147.4 | 131.1 | 0.9 (1.0) |
HCTH | 153.3 | 148.6 | 150.3 | 147.4 | 130.5 | 0.9 (1.0) |
OLYP | 153.5 | 148.8 | 150.4 | 147.5 | 130.5 | 1.0 (1.0) |
B98 | 153.6 | 149.2 | 150.7 | 147.8 | 131.6 | 1.1 (1.1) |
B1LYP | 153.7 | 149.2 | 150.7 | 147.8 | 132.0 | 1.1 (1.2) |
X3LYP | 153.8 | 149.3 | 150.8 | 147.9 | 131.8 | 1.1 (1.2) |
B3LYP | 153.8 | 149.3 | 150.9 | 147.9 | 131.7 | 1.1 (1.2) |
PBEPBE | 154.2 | 149.5 | 151.1 | 148.0 | 130.4 | 1.2 (1.3) |
BLYP | 154.8 | 150.0 | 151.5 | 148.5 | 131.0 | 1.4 (1.5) |
SV5LYP | 154.8 | 150.1 | 151.6 | 148.5 | 129.7 | 1.4 (1.5) |
M06HF | 155.5 | 152.3 | 151.0 | 148.5 | 132.7 | 1.7 (1.8) |
BP86 | 155.6 | 150.8 | 152.4 | 149.4 | 131.9 | 1.7 (1.8) |
Exp.a | 150.8 | 147.8 | 148.3 | 144.4 | 130.8 | — |
Exp.b | 150.3 | 147.1 | 147.8 | 145.0 | 130.5 | — |
B3LYPc | 151.2 | 147.0 | 148.2 | 146.3 | 132.1 | 0.5 (0.5) |
Nevertheless, for the gas-phase C70 molecule at rest it appears that the long-range corrected functionals CAM-B3LYP and wB97xd as well as the hybrid functionals with 50% of exact-exchange admixture BHandH and BHandHLYP perform the best, while the non-hybrid GGA functionals give a worse agreement with the experiment. The OPBE functional, provides results of the same accuracy as BHandHLYP with much smaller CPU cost. The good performance of the OPBE62,63 as well as “half-and-half” functionals for NMR parameters has been noticed elsewhere.58,59,64–67 A good performance is provided also by the M06L pure DFT functional of Truhlar and Zhao.33 Combining different exchange functionals with the LYP correlation along the B1LYP, B3LYP, X3LYP, and O3LYP series shows rather marginal dependence of the performance on the exchange functional. Increasing the exact exchange admixture in the functional generally lowers the calculated 13C chemical shifts, bringing them closer to the experimental ones, as seen in Fig. 2. A decrease of the RMSD with increasing exact-exchange admixture is observed for relative carbon shifts (C signals relative to Ce) in Fig. 2. Noticeably, if one looks at relative 13C NMR chemical shifts in Table S2 (ESI†) instead of the absolute ones in Table 2 the relative performance is somewhat altered especially for larger RMDS values.
![]() | ||
Fig. 2 The effect of increasing exact-exchange admixture in DFT functionals on calculated 13C chemical shifts. RMSD (solid line) stands for root mean square deviations from the experimental values.13 RMSDr (dashed line) is calculated for relative 13C shifts (C–Ce). |
We did not include the multiplicative Kohn–Sham methods68 denoted also as the optimized-effective potential (OEP) methods, often leading to improvements in calculations of magnetic resonance properties.69–75However, less significant improvement for carbon only containing compounds was observed.76
If the larger IGLO-IV basis set was used in the calculations shown in Table 2 (not affordable presently), most RMSDs should improve, as the DFT calculated 13C chemical shifts would lower by about 0.1–0.2 ppm, mostly towards the experimental values. We do not expect this rather small basis set effect to alter the performance of the DFT functionals, as shown in Table 2.
Exp. | BHandH | OLYP | wB97xd | ||||
---|---|---|---|---|---|---|---|
Vac. | Solv. | Vac. | Solv. | Vac. | Solv. | ||
a The BP86/def-TZVP or BP86/def-TZVP/CPCM geometry was used. Implicit solvent with parameters for 1,1,2-trichloroethane and the IGLO-III basis set for shielding calculations were employed. RMSD is the root-mean-square deviation from experimental values in ref. 13. RMSDr is calculated for relative chemical shifts (C–Ce). | |||||||
Ca | 150.8 | 152.8 | 152.3 | 153.5 | 153.2 | 150.6 | 150.2 |
Cb | 147.8 | 148.8 | 148.2 | 148.8 | 148.4 | 147.3 | 146.7 |
Cc | 148.3 | 150.1 | 149.6 | 150.4 | 150.1 | 147.9 | 147.5 |
Cd | 144.4 | 147.1 | 146.9 | 147.5 | 147.4 | 145.8 | 145.5 |
Ce | 130.8 | 132.1 | 131.8 | 130.5 | 130.3 | 132.3 | 132.0 |
RMSD | 0.8 | 0.7 | 1.0 | 0.9 | 0.4 | 0.5 | |
RMSDr | 0.4 | 0.4 | 1.3 | 1.3 | 0.8 | 0.9 |
Structure | Ca | Cb | Cc | Cd | Ce | RMSD (RMSDr) |
---|---|---|---|---|---|---|
a The BP86 functional was used. b The def2-TZVP basis set was used. RMSD is the root-mean-square deviation from experimental values ref. 13, RMSDr is calculated for relative chemical shifts (C–Ce). | ||||||
def-SVPa | 152.2 | 148.2 | 149.5 | 146.5 | 131.6 | 0.6 (0.4) |
def-TZVPa | 152.8 | 148.8 | 150.1 | 147.1 | 132.1 | 0.8 (0.4) |
def2-TZVPa | 151.9 | 147.9 | 149.3 | 146.5 | 131.2 | 0.5 (0.5) |
def2-QZVPa | 151.9 | 147.8 | 149.2 | 146.4 | 131.2 | 0.5 (0.5) |
BP86b | 152.8 | 148.8 | 150.1 | 147.1 | 132.1 | 0.8 (0.4) |
B3LYPb | 151.9 | 147.8 | 149.0 | 146.5 | 131.2 | 0.5 (0.5) |
B97db | 155.1 | 151.0 | 152.3 | 149.7 | 134.6 | 1.9 (0.4) |
Exp. | 150.8 | 147.8 | 148.3 | 144.4 | 130.8 |
Changing the DFT functional used for the optimization leads to substantially larger shift changes (obtained at the BHandHLYP/IGLO-III level), and they can both improve or worsen the results, as seen in Table 4. The B3LYP structure provides chemical shifts closer to experiment, while the B97d structure largely overestimates the shifts. If relative chemical shifts are compared to experimental results in Table 4via RMSDr (obtained from C signals relative to Ce), the B3LYP functional provides worse agreement than BP86 and B97d.
The seemingly good performance of, e.g. the B3LYP/def2-TZVP structure as compared to our default level BP86/def-TZVP is presumably due to error cancellation, as seen in Fig. 3, where the C–C distances in C60 calculated at different levels are compared to the experimental ones. The B3LYP/def2-TZVP or BHandHLYP/def2-TZVP levels provide worse calculated C–C distances than our default level for structure optimization BP86/def-TZVP. The BP86/def-TZVP level appears to provide reliable molecular structures also for endohedral helium fullerenes.58,59
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Fig. 3 Calculated bond lengths in optimized C60 obtained using the BP86 functional and different basis sets (on the right) and density functionals in combination with the def2-TZVP basis set (on the left). Experimental results are obtained from ref. 77. The C–C bonds are displayed on the top. |
Method | Ca | Cb | Cc | Cd | Ce | C60 |
---|---|---|---|---|---|---|
a Potential HF/6-31G//level for NMR BP86/IGLO-II. b Potential MM3//level for NMR BP86/IGLO-II. c Potential BP86/def-SVP//level for NMR BHandHLYP/IGLO-III. | ||||||
PT2a | −4.6 | −4.5 | −4.6 | −4.5 | −4.5 | — |
VCIa | −5.0 | −5.0 | −5.1 | −5.5 | −6.3 | — |
TCSa | −7.3 | −7.2 | −7.3 | −7.9 | −9.2 | — |
MDb | −6.0 | −3.8 | −5.0 | −5.7 | 2.1 | −3.4 |
FPMDc | −1.4 | −2.0 | −2.3 | −2.4 | −5.8 | −1.4 |
FPMD/COSMOc | −1.3 | −1.2 | −1.2 | −1.5 | −1.7 | −1.2 |
The changes caused by the molecular motions for the gas-phase C70 molecule can be assigned as deshielding and are relatively large, up to ca. −9 ppm, very much depending on the method. The positive (shielding) contribution result for Ce in the MD line in Table 5 may be an artifact caused by the inaccurate force field. The vibrational averaging in PT2 approximation gives nearly uniform deshielding of about −4.5 ppm for all carbon types, while the TCS, classical MD, and FPMD approaches show relatively more variable effects. The corrections for carbon Ce are significantly different from the other carbon types. The geometric fluctuations of atoms Ca–Ce around the equilibrium position are rather uniform (Table S4, ESI†), hence we infer that the differential dynamical contributions for Ca–Ce in FPMD originate from the fluctuations in the electronic structure.
For the C60 reference, dynamical correction to 13C nuclear magnetic shielding about −3 to −2 ppm was obtained using different methods comparable with that of −2.5 ppm mentioned previously.78 If anomalous contribution for atom Ce in C70 is excluded then the “dynamical” contribution for C60 represents approximately 70% of average C70 values (MD, FPMD). The vibrational (PT2, VCI, TCS) contributions to the 13C NMR chemical shifts in C70 are likely to be similar as in C60. Therefore, the usage of C60 as the secondary reference will partly cancel the dynamical corrections.
If the best DFT results in Table 2 are added to the dynamical corrections in Table 5 (taken with opposite sign to turn the nuclear magnetic shielding into the chemical shift), the agreement with the experiment is not improved. However, when the FPMD simulations are performed in the solvent, the dynamical corrections (Table 5) for the 13C nuclear magnetic shielding are still deshielding but now considerably smaller in absolute size and more uniform (−1.2 to −1.7 ppm) than those obtained for FPMD simulation in vacuo. A detailed look reveals that the solvent damps the molecular motions. This is documented in Table S2 (ESI†) on the average deviations from equilibrium positions.
The different contributions to the total 13C NMR chemical shifts in C70 discussed above are summarized in Fig. 4. The inclusion of solvent and basis set correction decreases the gas phase shifts and thus improve the agreement with experiment.
![]() | ||
Fig. 4 Importance of various effects on calculated 13C chemical shifts in C70. BHandHLYP stands for shifts obtained by the vacuum BHandHLYP/IGLO-III calculation, “solvent” denotes the BHandHLYP/IGLO-III/CPCM model, and the other bars are related to the involvement of vacuum and solvent FPMD dynamics. All data are corrected for the estimated basis set error calculated from difference between the IGLO-IV and IGLO-III results in Table 1 (all results comprise the previous enhancements, e.g. the “dynamic” = BHandHLYP shifts in vacuum + solvent contribution + basis set correction + dynamic contribution). The experiment is taken from ref. 13. |
The contributions due to molecular motions (FPMD is shown as example in Fig. 4) are mostly positive, and shift the values away from the experimental ones. If the FPMD simulations could be run longer, an improvement of a couple of tenths of ppm could be expected due to somewhat large statistical error (mean error of the average, see the Methods section) obtained, ±0.35 ppm for the dynamical corrections to the 13C chemical shift. The total calculated 13C shifts corrected for the basis set error and dynamical solvent are again closer to the experimental ones. However, the inclusion of the dynamical corrections including solvent does not bring any significant improvement over the static molecule in vacuo results, because they are small in size, relatively uniform, and largely cancelled by the dynamical effect of the reference C60 compound.
![]() | ||
Fig. 5 Temperature effect on NMR shifts in C70. Plot shows comparison of experimental and theoretical (BP86/IGLO-II//HF/6-31G) differences in relative shieldings caused by temperature (Δ = 100 K). The shift is referenced to Ce. |
Inclusion of the implicit solvent effects caused a decrease of the calculated 13C chemical shifts towards the experimental values by about 1 ppm. The effect of molecular motions on the 13C NMR chemical shift in gas-phase C70 caused relatively large deshielding contributions of about 2–9 ppm, depending on the method used for averaging. These changes were strongly damped if the solvent was considered in simulation, leading to a deshielding contribution of about 1.2–1.7 ppm only. For the chemical shifts, the changes were largely cancelled by the motional contributions from the C60 reference.
Footnote |
† Electronic supplementary information (ESI) available: Modified MM3 fullerene parameters, performance of DFT functionals for 13C chemical shifts, calculated data for TCS, the effect of temperature on the experimental 13C NMR signal. See DOI: 10.1039/c3cp50657f |
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