Pekka
Pyykkö
* and
Patryk
Zaleski-Ejgierd
Department of Chemistry, University of Helsinki, POB 55 (A. I. Virtasen aukio 1), 00014, Helsinki, Finland. E-mail: Pekka.Pyykko@helsinki.fi
First published on 23rd October 2007
The previously proposed flat 2,6-diauro-1,5-naphthyridine polymers were bent to closed rings with up to 12 monomers. Their bending energies and lowest in-plane deformation frequencies were calculated at the DFT level using quasirelativistic pseudopotentials for gold. The ring-formation energies were compared with those for polyacene rings and found to be of the same order of magnitude, suggesting sufficient stability for the predicted polyauronaphthyridines. As function of the ring radius, r, the frequencies and deformation energies were shown to behave as r−2 and r−1, respectively. The molecules thus behave as classical elastic bodies.
While there are chemically stable dimers and oligomers of such a type,4,5 no corresponding infinite polymers are yet experimentally known. We therefore here try to get a feeling for their mechanical rigidity by bending our nanostrips to rings and comparing that bending energy with the one for the corresponding polyacene rings, which have been considered before.6
The predicted rings may also exhibit interesting dispersion interactions with atoms or molecules inside them. The London-type theory of such interactions was just formulated.7
Apart from the energy needed to create the ring from a linear strip, we also use the in-plane deformation vibrational frequencies as a criterion for rigidity. The mathematical theory of such vibrations was already considered by Hoppe8 and later by Love.9 Note that we then treat molecules as elastic bodies.
A similar approach using the Hoppe solution for rings was used by Ceulemans and Vos to discuss the ring vibrations of benzene.10 The approach was also extended to spheres, modelling icosahedral fullerenes.10,11
In this paper we consider two families of rings. The first one consists of rings, composed from monomeric 2,6-diauro-1,5-naphthyridine units, ’glued’ together by C–Au ← N bonds. The second one consists of polyacene rings, composed from six-membered carbon-rings fused together. In both cases the number of monomeric units, N, ranged from 4 to 12.
We have also performed calculations for corresponding finite flat strips. For the gold-glued strips we calculated an isolated 2,6-diauro-1,5-naphthyridine molecule, and its oligomers, see Fig. 1. For the polyacene strips we started from the benzene molecule, adding C4H2 blocks, thus obtaining naphthalene, anthracene, etc., see Fig. 2.
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Fig. 1 The polynaphthyridine strip with N = 3. The dashed frame encircles a 2,6-diauro-1,5-naphthyridine monomer. All considered strips belong to the C2h symmetry point group. L defines a strip length. |
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Fig. 2 Examples on polyacene strips with an odd and even number, N, of six-membered carbon rings. All systems have a D2h symmetry. The dashed frame encircles a [C4H2] building unit. The distance L is taken as the polyacene length. |
Our gold nanostrips and rings have relatively short Au⋯Au distances, imposed by the rest of the system. While those covalent interactions are well described by DFT, the dispersion interactions between the gold atoms are not.22 Therefore it may not be useful to extend the present basis, because other factors form the accuracy bottleneck.
We have also checked that the obtained results are not affected if a hybrid, B3-LYP exchange–correlation functional is used. Both the geometries and the energy differences obtained for a few test cases were close to the PBE results.
The presented structures and results correspond to closed shell singlets, for both rings and strips. In case of the longer polyacenes, the possibility of a diradical singlet state has been mentioned in the past. The latest studies show that a finite gap persists even for infinite polymers.23 We did find a decreasing HOMO–LUMO gap trend with increasing N.
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Fig. 3 Schematic illustration for the bar-type (A–C) and the ring-type (D–E) systems. Examples on the considered vibration modes are depicted in F and G. |
For a ring of radius r:
![]() | (2) |
![]() | (3) |
![]() | (4) |
![]() | (5) |
![]() | (6) |
![]() | (7) |
![]() | (8) |
The key conclusions from this subchapter are that, as function of the system size, the discussed vibrational frequencies should behave as L−2 and r−2 for the slabs and rings, respectively. The total bending energy of the system to a ring of radius r should go as r−1 for a given monomer. These laws can be used to analyze the quantum chemical results.
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Fig. 4 An example on a polyacene ring. The black spheres stand for carbon and the gray spheres for hydrogen atoms. The radius of the ring, r, lies in a σh plane of symmetry and is defined as the distance from the center of symmetry to the HC ⋯ CH midpoint, given as a black dot). Each ring is composed of N C4H2 building blocks. All rings considered have Dnh symmetry. |
N | r | r′ | CA–CB | CB–CB′ | CA–H |
---|---|---|---|---|---|
4 | 171.7 | 173.7 | 141.3 | 144.7 | 109.1 |
5 | 202.4 | 196.2 | 142.2 | 147.4 | 109.2 |
6 | 241.9 | 238.8 | 141.3 | 145.0 | 109.3 |
7 | 278.4 | 273.5 | 141.3 | 147.2 | 109.3 |
8 | 318.1 | 315.5 | 141.2 | 145.8 | 109.2 |
9 | 355.7 | 351.8 | 141.0 | 147.0 | 109.2 |
10 | 395.3 | 393.0 | 140.9 | 146.2 | 109.3 |
11 | 433.4 | 430.1 | 140.9 | 147.0 | 109.2 |
12 | 472.9 | 470.9 | 140.8 | 146.4 | 109.3 |
Already for N = 5, the hydrogen atoms start to turn towards the principal symmetry axis, Cn, so that r′ < r. For N > 5, r′→r and the CA–H bonds become closely parallel to the mentioned Cn axis.
In addition to rings, we have carried out calculations for several strip-type structures. The simplest ‘strip’ corresponds to the benzene molecule. It was optimized under D6h symmetry, while the larger systems with N > 1, were optimized under D2h symmetry. The length of a strip, L, is defined as the distance between the outermost symmetrically equivalent hydrogen atoms, see Fig. 2.
Our initial structures were fully symmetrical, with all C–C bonds set equal. After geometry optimization we found two types of C–C bond length alternations. The first one affects the ’vertical’ C–C contacts. The innermost, C1–C1′ bond length (see Fig. 2) was always the longest one, each following one decreasing in length. The second type of alternation refers to the ‘tilted’–C–C–C–C– bonds. The central part of the strips exhibits a lower degree of alternation. For details, see Table 2. A vibrational analysis revealed no imaginaries for the singlet states studied.
Length N | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
---|---|---|---|---|---|---|---|---|---|---|
C0–C1 | 139.7 | — | 140.2 | — | 140.4 | — | 140.4 | — | 140.5 | — |
C1–C2 | — | 142.0 | 142.8 | 141.1 | 141.3 | 140.7 | 140.9 | 140.6 | 140.7 | 140.3 |
C2–C3 | — | 137.9 | 137.4 | 139.6 | 139.3 | 140.1 | 139.9 | 140.3 | 140.2 | 141.3 |
C3–C4 | — | — | — | 143.1 | 143.2 | 141.5 | 141.6 | 141.0 | 141.0 | 139.4 |
C4–C5 | — | — | — | 137.1 | 137.0 | 139.1 | 139.1 | 139.9 | 139.9 | 142.0 |
C5–C6 | — | — | — | — | — | 143.3 | 143.3 | 141.6 | 141.6 | 139.2 |
C6–C7 | — | — | — | — | — | 136.9 | 136.9 | 139.0 | 139.0 | 142.0 |
C7–C8 | — | — | — | — | — | — | — | 143.3 | 143.3 | 139.9 |
C8–C9 | — | — | — | — | — | — | — | 136.9 | 136.9 | 140.9 |
C9–C10 | — | — | — | — | — | — | — | — | — | 142.2 |
C11–C10 | — | — | — | — | — | — | — | — | — | 138.0 |
C1–C1′ | 139.7 | 143.7 | 144.8 | 145.5 | 145.9 | 146.3 | 146.5 | 146.7 | 146.8 | 146.2 |
C3–C3′ | — | 141.6 | 142.4 | 145.3 | 145.6 | 146.2 | 146.3 | 146.6 | 146.7 | 146.2 |
C5–C5′ | — | — | — | 142.7 | 142.9 | 145.8 | 145.8 | 146.3 | 146.4 | 145.9 |
C7–C7′ | — | — | — | — | — | 143.0 | 143.1 | 145.9 | 145.9 | 145.3 |
C9–C9′ | — | — | — | — | — | — | — | 143.1 | 143.1 | 144.5 |
C11–C11′ | — | — | — | — | — | — | — | — | — | 141.7 |
L | 431.0 | 676.9 | 922.5 | 1168.3 | 1414.2 | 1660.2 | 1906.2 | 2152.2 | 2398.4 | 2649.9 |
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Fig. 5 The polynaphthyridine ring with N = 7. The black spheres are the carbon atoms, the gray spheres the gold atoms and the white spheres with a black border the nitrogen atoms. Each ring can be seen as N naphthyridine units, ‘glued’ together by Au atoms. The hydrogen atoms were removed for readability. All systems considered belong to Dn point groups. |
Length/N | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
---|---|---|---|---|---|---|---|
C1–C2 | 139.9 | 139.8 | 139.7 | 139.7 | 139.7 | 139.6 | 139.6 |
C2–N3 | 133.7 | 133.6 | 133.5 | 133.5 | 133.4 | 133.4 | 133.4 |
N3–C4 | 138.7 | 138.8 | 138.8 | 138.8 | 133.9 | 138.9 | 139.0 |
C4–C5 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 |
C5–C6 | 139.2 | 139.2 | 139.1 | 139.1 | 139.1 | 139.1 | 139.1 |
C6–C7 | 139.9 | 139.8 | 139.7 | 139.7 | 139.7 | 139.7 | 139.7 |
C7–N8 | 133.7 | 133.6 | 133.5 | 133.5 | 139.4 | 133.4 | 133.4 |
N8–C9 | 138.7 | 138.8 | 138.8 | 138.8 | 138.9 | 138.9 | 139.0 |
C9–C4 | 144.0 | 144.1 | 144.2 | 144.2 | 144.3 | 144.3 | 144.3 |
C9–C10 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 |
C10–C1 | 139.2 | 139.2 | 139.1 | 139.1 | 139.1 | 139.1 | 139.1 |
N3–Au | 214.6 | 213.5 | 213.3 | 213.0 | 212.9 | 212.8 | 212.7 |
C5–Au | 200.6 | 200.4 | 200.4 | 200.4 | 200.4 | 200.4 | 200.4 |
Au–Au | 274.4 | 272.8 | 272.4 | 271.7 | 271.4 | 271.2 | 271.1 |
R | 442.4 | 553.4 | 641.1 | 775.9 | 871.1 | 998.5 | — |
In contrast to polyacene rings, there is no alternation between the rings with odd and even N. While the coupled aromatic rings of a polyacene form a single aromatic system, the present (hetero)aromatic monomers are simply ‘glued’ together by σ-bonded gold atoms. Interestingly, the N → Au and the Au–Au bond lengths decrease slightly for larger systems, while the Au–C distances remain practically the same.
The simplest member of the corresponding strip family is the 2,6-diauro-1,5-naphthyridine molecule. Like the longer strips, it was optimized with C2h symmetry. The length of a strip, L, is defined as in Fig. 1. The geometry optimizations did not reveal any significant bond length alternation. The results are collected in Table 4. A vibrational analysis shows only real frequencies.
N = 1 | N = 2 | N = 3 | N = 4 | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Length | I | I | II | I | II | III | I | II | III | IV |
C1–C2 | 141.8 | 141.0 | 140.4 | 140.9 | 139.6 | 140.4 | 141.0 | 139.6 | 139.6 | 140.4 |
C2–C3 | 137.9 | 139.1 | 137.9 | 139.1 | 139.0 | 138.0 | 139.1 | 139.0 | 139.0 | 138.0 |
C3–C4 | 142.6 | 144.2 | 142.5 | 144.2 | 144.5 | 142.6 | 144.2 | 144.5 | 144.5 | 142.6 |
C4–N5 | 136.0 | 138.8 | 136.1 | 138.8 | 138.8 | 136.1 | 138.9 | 138.9 | 138.8 | 136.1 |
N5–C6 | 131.9 | 133.3 | 132.0 | 133.3 | 133.3 | 132.1 | 133.3 | 133.3 | 133.3 | 132.1 |
C6–C7 | 141.8 | 140.4 | 141.0 | 140.4 | 139.6 | 140.9 | 140.4 | 139.6 | 139.6 | 141.0 |
C7–C8 | 137.9 | 137.9 | 139.1 | 138.0 | 139.0 | 139.1 | 138.0 | 139.0 | 139.0 | 139.1 |
C8–C9 | 142.6 | 142.5 | 144.2 | 142.6 | 144.5 | 144.2 | 142.6 | 144.5 | 144.5 | 144.2 |
C9–C4 | 144.7 | 144.4 | 144.4 | 144.4 | 144.5 | 144.4 | 144.4 | 144.4 | 144.4 | 144.4 |
C9–N10 | 136.0 | 136.1 | 138.8 | 136.1 | 138.8 | 138.8 | 136.1 | 138.8 | 138.9 | 138.9 |
C3–Au | 197.9 | 200.7 | 197.7 | 200.6 | 200.5 | 197.7 | 200.6 | 200.4 | 200.5 | 197.7 |
C8–Au | 197.9 | 197.7 | 200.7 | 197.7 | 200.5 | 200.6 | 197.7 | 200.5 | 200.4 | 200.6 |
N5–Au | — | 212.8 | — | 212.7 | 212.8 | — | 212.7 | 212.6 | 212.8 | — |
N10–Au | — | — | 212.8 | — | 212.8 | 212.7 | — | 212.8 | 212.6 | 212.7 |
N | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
L | 678.7 | 1376.6 | 1675.0 | 2772.9 | 3870.8 | 4968.7 | 6066.6 | 7164.5 | 8262.4 | 9360.3 |
Calculated frequencies/cm−1 | |||||
---|---|---|---|---|---|
Polyacene strips | Polynaphthyridine strips | ||||
N | Type | Calc. | Exp. | Type | Calc. |
a Ref. 26. b Ref. 27. c Ref. 28 (B3LYP/6-31-G, calculation). | |||||
1 | e3u | 400 | 398a | au | 39.33 |
2 | b1u | 170 | 176b | au | 11.20 |
3 | b1u | 95 | 108b | au | 7.40 |
4 | b1u | 59 | 57c | au | 4.17 |
5 | b1u | 47 | — | — | — |
6 | b1u | 42 | — | — | — |
7 | b1u | 28 | — | — | — |
8 | b1u | 22 | — | — | — |
9 | b1u | 19 | — | — | — |
10 | b1u | 17 | — | — | — |
Calculated frequencies/cm−1 | ||||
---|---|---|---|---|
Polyacene rings | Polynaphtyrydine rings | |||
N | Type | Calc. | Type | Calc. |
4 | b1u | 255 | au | 24.19 |
5 | b1u | 206 | au | 14.71 |
6 | b1u | 147 | au | 12.06 |
7 | b1u | 110 | au | 6.51 |
8 | b1u | 81 | au | 5.89 |
9 | b1u | 69 | au | 6.75 |
10 | b1u | 48 | au | 7.81 |
An accurate determination of the frequency values for larger systems, especially for the polynaphthyridine strips, posed certain problems. Due to a symmetry, lower than for the rings, as well as to the large number of atoms and the fact that considered values are rather small, we do not expect the results for the largest systems to be reliable, and hence they were excluded from further consideration, see Table 5 and Table 6 for details.
We have also checked that the ω(L−2) relation is correct for two higher vibrational modes, corresponding to the n = 3 and n = 4, where n is given by eqn (5). Results are given in Fig. 7 and 9. The calculated ratios of slope coefficients: 1:
2.32
:
4.21, are comparable to the theoretical values of 1
:
2.82
:
5.42 obtained from eqn (5). We found that for n = 3, the benzene ‘strip’, and for n = 4 also the naphthalene strip had to be excluded from further consideration. With a larger number of nodes those molecules were found to be too ‘short’ to reproduce the higher-order distortions in a reliable manner. Similar trends were observed for naphthyridine series.
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Fig. 6 Extrapolation scheme based on the polyacene case. The extrapolated value E∞Ring, at 1/r→ 0, corresponds to the energy of a monomer in the ring of an infinite radius, N→∞. |
The main conclusion from Fig. 7, 8 and 9 is that, as function of system size, the considered vibrational frequencies indeed behave as predicted by the classical model, i.e. they are proportional to the length parameter r or L to the power of −2. The small deviations occurring for higher n values, could be related to the mentioned ‘length problem’ or the harmonic approximation. This is the first observation, to our knowledge, that a molecular sequence behaves in this respect as a series of elastic bodies.
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Fig. 7 The ω versus L−2 dependence for polyacene and polynaphthyridine strips. The frequency ω corresponds to the lowest ‘butterfly’ deformation of the strip, see Fig. 3F. |
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Fig. 8 The ω versus r−2 dependence for polyacene and polynaphthyridine rings. The frequency ω corresponds to the out-of-plane deformation, shown in Fig. 3G. |
There is a difference of a [C2H4] block between the corresponding polyacene ring and strip, hence the different number of atoms makes this kind of direct comparison impossible.
For the naphthyridines, the rings are indeed just bent strips with the same general formula, (Au2C8N2H4)n, but an extra complexation energy would still arise.
Therefore an alternative reference for the energy of a flat, infinite polymer was obtained by letting the ring radius approach infinity, first verifying the r−1 behavior of the deformation energy, see Fig. 6. The extrapolated energy value E∞Ring, is the energy per monomer in a ring of infinite diameter.
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Fig. 9 Calculated out-of-plane vibrational frequencies for the polyacene strips, for the three lowest n values, as a function of L−2. Here, n is defined in eqn (5). |
The energy of bending the strips into rings is then defined by:
![]() | (9) |
Bending energy | ||
---|---|---|
N | Polyacene ring | Polynaphthyridine ring |
4 | 240.9 | 86.5 |
5 | 190.2 | 55.4 |
6 | 119.3 | 38.5 |
7 | 90.6 | 28.2 |
8 | 56.0 | 21.6 |
9 | 50.7 | 17.0 |
10 | 28.6 | 13.7 |
11 | 30.8 | — |
12 | 14.5 | — |
A further consistency check between the calculated vibrational frequencies and bonding energies was performed using eqn (7). This relation combines the energetic properties, ω and E′Ring(N), with the physical parameters, M and r. The computationally calculated results are consistent with theoretically expected values, see the caption of Fig. 10. The linear dependence provides further support to the model and shows that the polyacene and polynaphthyridine rings behave in a similar fashion.
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Fig. 10 The consistency check according to eqn (7). The two sets of data correspond to polyacene, +, and polynaphthyridine,●, structures. The fitted slopes of the two lines are 14.32 and 13.64 for the two systems, respectively. These can be compared to the slope of 72/5 = 14.4, predicted by eqn (7). |
Based on eqn (3), we now can also define deformation energy as:
![]() | (10) |
System | πEI/kJ mol−1Å | c/kJ mol−1 |
---|---|---|
PA | 2152 | 4889 |
PAN | 1555 | 1386 |
PA/PAN | 1.38 | 3.51 |
The corresponding pre-coefficients for our proposed polyauronaphthyridine systems are not drastically smaller than those for the experimentally known polyacene systems. Therefore the proposed systems with “gold as intermolecular glue” may also be sufficiently stable for experimental synthesis and further study.
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