Nancy L. S. Yue, Michael C. Jennings and Richard J. Puddephatt*
Department of Chemistry, University of Western Ontario, London, Canada N6A 5B7. E-mail: pudd@uwo.ca
First published on 23rd June 2006
The thiophene-based bis(N-methylamido-pyridine) ligand SC4H2-2,5-{C(O)N(Me)-4-C5H4N}2 reacts with silver(I) salts AgX to give 1 : 1 complexes, which are characterized in the solid state as the macrocyclic complexes [Ag2{SC4H2-2,5-(CONMe-4-C5H4N)2}2][X]2, which have the cis conformation of the C(
O)N(Me) group, when X = CF3CO2, NO3, or CF3SO3 but as the polymeric complex [Agn{SC4H2-2,5-(CONMe-4-C5H4N)2}n][X]n, with the unusual trans conformation of the C(
O)N(Me) group, when X = PF6. The bis(amido-pyridine) ligand SC4H2-2,5-{C(
O)NHCH2-3-C5H4N}2 reacts with silver(I) trifluoroacetate to give the polymeric complex [Agn{SC4H2-2,5-(CONHCH2-3-C5H4N)2}n][X]n, X = CF3CO2. The macrocyclic complexes contain transannular argentophilic secondary bonds. The polymers self assemble into sheet structures through interchain C
O⋯Ag and S⋯Ag bonds in [Agn{SC4H2-2,5-(CONMe-4-C5H4N)2}n][PF6]n and through Ag⋯Ag, C
O⋯Ag and Ag⋯O(trifluoroacetate)⋯HN secondary bonds in [Agn{SC4H2-2,5-(CONHCH2-3-C5H4N)2}n][CF3CO2]n.
In previous papers, it has been shown that flexible bidentate or tridentate ligands containing two N-methyl-amido-4-pyridine arms, 1 and 2 (Chart 1), can give either macrocyclic disilver(I) complexes, 3 and 4 (Chart 1), or a polymeric complex, 5 (Chart 1), in the solid state.5,7 The complexes with X = CH (Chart 1) formed only macrocyclic complexes 3 in which the ligands adopted the distorted cis,cis,syn conformation, and the cavity of the macrocycle could expand to include a guest anion or contract to form a transannular Ag⋯Ag secondary bond.6 When X = N (Chart 1), the complexes could crystallize either as macrocycles 4 or as a mixture of macrocycle 4 and polymer 5, and the extra pyridyl group could coordinate to an extra silver(I) ion or increase the dimensionality through intermolecular N⋯Ag bonding.5
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Chart 1 |
In this paper, the chemistry of the analogous ligand with a central thiophene group in place of the benzene or pyridine group of 1 or 2 (Chart 1) is described. The ligand 6 (Chart 2) can adopt either the cis,cis,syn conformation 6-A or the trans,trans,syn conformation 6-B in forming silver(I) complexes. The thiophene group of 6 has the potential to act as a weak ligand for silver(I). In general, thiophene is a weaker ligand than the central pyridine group present in ligand 2, but perhaps a stronger ligand than the central phenyl group (with the potential ability to form arene complexes) of ligand 1. Hence the thiophene groups could increase the dimensionality of the silver(I) compounds, whose primary structures are formed by bonding between silver(I) and the pyridyl arms of ligand 6. The ligand 7 contains both a central thiophene group and simple amide units, so it could give supramolecular chemistry through either hydrogen bond formation or secondary bonding using the thiophene donor.8 By studying this ligand, it was hoped to determine the relative importance of the two types of secondary bonding. Of course, all the complexes also have the potential to undergo supramolecular association through argentophilic bonding.9 The use of thiophene groups in supramolecular chemistry has been explored previously, and it is well known that electropolymerized thiophene derivatives can coordinate to silver(I).10,11
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Chart 2 |
N⋯Na | Ag⋯Aga | Θ1b | Θ2c | Θ3d | |
---|---|---|---|---|---|
a Distance between pyridyl nitrogen atoms or between silver(I) centers in Å.b Θ1 = Dihedral angle SCCO, a measure of the twist from the syn-planar conformation of the thiophene with respect to carbonyl group of the amide unit.c Θ2 = Dihedral angle CCNC(py or CH2py), twist of the amide unit from the cis-planar conformation.d Θ3 = Dihedral angle C(carbonyl)NCC(py or CH2py), twist of the pyridyl or pyridylmethyl group with respect to the amide unit. | |||||
6·2HCl·4H2O | 5.65 | 47 | 23 | 30 | |
8a | 4.06 | 3.33 | 147, 144 | 30, 26 | 33, 38 |
3.66 | 3.06 | 135, 142 | 30, 33 | 42, 38 | |
8b | 3.58 | 3.14 | 142, 132 | 32, 23 | 34, 47 |
3.50 | 3.04 | 149, 142 | 30, 28 | 45, 40 | |
8c | 3.88 | 3.42 | 146, 140 | 28, 32 | 42,39 |
4.10 | 3.60 | 146, 134 | 36, 25 | 38, 33 | |
8d | 15.53 | 19.78 | 31, 41 | 168, 165 | 5, 22 |
7 | 13.1 | 18, 7 | 178, 170 | 85, 78 | |
9 | 14.1 | 18.2 | 23, 12 | 175, 180 | 96, 88 |
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Fig. 1 A view of the structure of the protonated ligand C4H2S(CONMe-4-C5H4N)2, 6, in 6·2HCl·4H2O. The water molecules which are not hydrogen bonded to either 6 or the Cl− ions are not shown. Symmetry equivalent: A, x, 1.5 − y, z. |
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Scheme 1 |
The structure of the trifluoroacetate derivative 8a, is shown in Fig. 2, with conformational data listed in Table 1. The complex exists as the disilver(I) macrocycle in an extended chair conformation. There are two independent, similar molecules, each of which contains an inversion centre, and only one is shown in Fig. 2. Each silver atom is bound to two pyridyl nitrogen atoms and, more weakly, to two asymmetrically bridging κ1-µ2-trifluoroacetate ions, which are situated above and below the macrocycle (Fig. 2). There is also a transannular argentophilic interaction [molecule 1, Ag(1)⋯Ag(1A) = 3.3266(6); molecule 2, Ag(2)⋯Ag(2B) = 3.0604(7) Å]. The macrocycles are arranged in chains but the intermolecular silver⋯silver distance of Ag(1)⋯Ag(2B) = 3.55 Å is too long to represent a significant bonding interaction.9 Compared to the protonated ligand, the thiophene group is rotated with respect to the amide unit so that the sulfur is directed towards the pyridyl groups, and this allows a shorter N⋯N separation between the pyridine donor atoms (Table 1, Fig. 1 and 2).
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Fig. 2 A view of the structure of the trifluoroacetate complex [Ag2(CF3CO2)2{C4H2S(CONMe-4-C5H4N)2}2], 8a. Selected bond parameters: Ag(1)–N(11) 2.195(2); Ag(1)–N(31) 2.182(2); Ag(1)–O(81) 2.522(2); Ag(1)–O(81A) 2.655(3); Ag(1)–Ag(1A) 3.3265(6) Å; N(31)–Ag(1)–N(11) 160.4(1); N(31)–Ag(1)–O(81) 104.9(1); N(11)–Ag(1)–O(81) 89.6(1)°. Symmetry equivalents: A, −x, 2 − y, −2 − z. For the independent molecule, corresponding parameters are: Ag(2)–N(21) 2.145(2); Ag(2)–N(41) 2.160(3); Ag(2)–O(71) 2.500(3); Ag(2)–O(71A) 2.677(3); Ag(2)–Ag(2A) 3.0604(7) Å; N(21)–Ag(2)–N(41) 163.1(1); N(21)–Ag(2)–O(71) 106.6(1); N(41)–Ag(2)–O(71) 86.4(1)°. |
The structure of the nitrate derivative 8b is similar to that of 8a and is shown in Fig. 3, with conformational parameters listed in Table 1. There are two independent molecules with similar structures (Fig. 3, Table 1) and they are arranged in chains with the intermolecular distance Ag(1)⋯Ag(2B) = 3.48 Å, which may represent a weak argentophilic bond.9 The nitrate ions lie above and below each macrocycle, but are only weakly bonded as κ2-µ2-nitrate [molecule 1, Ag(1)–O(71) = 2.79, Ag(1)–O(72A) = 2.77 Å; molecule 2, Ag(2)–O(63) = 2.66, Ag(2)–O(61A) = 2.68 Å] and are omitted from Fig. 3, for clarity. Short Ag⋯Ag distances with weakly bridging nitrate have been observed previously.9
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Fig. 3 A view of the structure of the nitrate complex [Ag2(NO3)2{C4H2S(CONMe-4-C5H4N)2}2], 8b, showing the chains of macrocycles. Selected bond parameters: Ag(1)–N(1) 2.132(6); Ag(1)–N(23A) 2.150(6); Ag(1)–Ag(1A) 3.140(1) Å; N(1)–Ag(1)–N(23A) 167.6(2)°. For the independent molecule, corresponding parameters are: Ag(2A)–N(53B) 2.145(6); Ag(2A)–N(31A) 2.152(5); Ag(2A)–Ag(2B) 3.038(1) Å; N(53B)–Ag(2A)–N(31A) 166.3(2)°. Symmetry equivalents: A, −x, 1 − y, −2 − z; B, −x, 2 − y, −2 − z. |
The structure of the triflate derivative is shown in Fig. 4, with conformational parameters in Table 1. The overall structure is similar to those of 8a (Fig. 2) and 8b (Fig. 3), but the transannular silver⋯silver distances in the two independent molecules [Ag(1)⋯Ag(1A) = 3.42 Å, Ag(2)⋯Ag(2A) = 3.60 Å] are longer than in the trifluoroacetate or nitrate derivative and can, at best, represent only very weak bonding interactions.9 The closest intermolecular distance Ag(1)⋯Ag(2) = 3.70 Å. In the molecule containing Ag(2), the κ1-µ2-triflate ions bridge weakly between the silver(I) ions [Ag(2)–O(61) 2.597(8); Ag(2)–O(61A) = 2.73(1) Å] in a similar way as the trifluoroacetate ions in 8a (Fig. 2) but, in the molecule containing Ag(1), the κ2-µ2-triflate ions bridge weakly between the silver(I) ions [Ag(1)–O(71) = 2.75(1); Ag(1)–O(72A) = 2.79(1) Å] in a similar way as the nitrate ions in 8b, indicating that there is very little difference in energy between these bridging modes.
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Fig. 4 A view of the structure of the triflate complex [Ag2(CF3SO3)2{C4H2S(CONMe-4-C5H4N)2}2], 8c. Selected bond parameters: Ag(2)–N(31) 2.162(7); Ag(2)–N(53A) 2.172(7); Ag(2)–O(61) 2.597(8) Å; N(31)–Ag(2)–N(53A) 166.3(3); N(31)–Ag(2)–O(61) 92.3(3); N(53A)–Ag(2)–O(61) 93.3(3)°. Symmetry equivalent: A, 1 − x, 3 − y, 1 − z. For the independent molecule, corresponding parameters are: Ag(1)–N(1) 2.160(6); Ag(1)–N(23A) 2.181(7) Å; N(1)–Ag(1)–N(23A) 166.5(3)°. |
The structure of the hexafluorophosphate derivative 8d is shown in Fig. 5 and conformational parameters are listed in Table 1. The primary structure in this case is a polymer, formed by bridging of the ligands between silver(I) atoms in a linear fashion. The hexafluorophosphate anion is not coordinated [shortest contact Ag⋯F(42A) = 2.96 Å]. Interestingly, the N-methylamide –N(Me)C(O)-group of the ligand 6 exists in the unusual extended trans,trans,syn conformation (Chart 2, Table 1). In general, the N-methylamide group tends to exist in the cis conformation, that leads to a folded conformation of the molecule, while the opposite trans conformation, which leads to the more linear structure, is most commonly observed for the –NHC(
O)-group.12 Although the interconversion of the cis and trans N-methylamide group in solution has been observed, this appears to be the first solid state structure of a complex containing the trans N-methylamide group.12 Two further differences between 8d and the macrocyclic complexes 8a–8c are that the carbonyl groups are roughly syn to the thiophene sulfur atom, and that the pyridyl groups are much closer to co-planarity with the amide units (Table 1). The polymer chains of 8d undergo further self-assembly in the solid state in the following way (Fig. 5). The silver atoms of one linear polymer chain are weakly coordinated to the sulfur atoms of the thiophene groups of a second polymer chain [Ag⋯S(22) = 3.32 Å], and vice-versa, to give a double stranded polymer chain. Then, further coordination of silver(I) atoms to the carbonyl atoms of a second pair of polymer chains [Ag⋯O(27) = 3.10 Å] occurs to form a supramolecular sheet structure (Fig. 5).
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Fig. 5 Views of the structure of the hexafluorophosphate derivative [Ag{C4H2S(CONMe-4-C5H4N)2}]n[PF6]n, 8d: above, the cationic building block unit; below, part of the supramolecular sheet structure. Selected bond parameters: Ag–N(11) 2.131(4); Ag–N(33A) 2.140(4) Å; N(11)–Ag–N(33A) 168.6(2)°. Symmetry equivalents: A, 0.5 − x, −0.5 − y, 1.5 − z; D, −x, 1 − y, 1 − z. |
From the above, it is clear that the solid state structures are anion dependent, and it was of interest to know if this is also true for the structures in solution.6 The complexes are sparingly soluble in non-polar solvents, but complexes 8a–8c are sufficiently soluble in methanol to give satisfactory 1H NMR spectra and ESI mass spectra. The 1H NMR spectra, obtained in solution in CD3OD, are similar to the spectrum of the free ligand 6, with only modest coordination shifts observed. There was no evidence for the presence of isomeric mixtures, but the data are inconclusive because rapid exchange might give coalescence of signals. Satisfactory low temperature NMR spectra could not be obtained because the solubility was too low.
The ESI-MS of the complexes 8a–8c, obtained in dilute solution in methanol, showed the highest mass peak envelope centered at m/z = 1033, 982, and 1071, corresponding to the ions [62 + 107Ag2 + X]+, with X = CF3CO2, NO3 and CF3SO3, respectively, consistent with the presence of macrocycles in solution. The ESI-MS of complex 8d, obtained using a dilute solution in acetonitrile at low temperature, contained an envelope of peaks at m/z = 1065 corresponding to [62 + 107Ag2 + X]+, where X = PF6, but also contained higher mass peaks centred at m/z = 1671 and 2276 corresponding to [63 + 107Ag3 + X2]+ and [64 + 107Ag4 + X3]+, indicating the presence of at least some trimer and tetramer along with the macrocyclic dimer in solution. The ESI-MS of 8a–8c obtained under similar conditions failed to show peaks in these regions, the highest mass peaks being assigned to dimers as described above.
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Fig. 6 The sheet structure of the ligand C4H2S(CONHCH2-3-C5H4N)2, 7. Hydrogen bonding distances N(18)⋯N(32A) 3.022(6); N(28)⋯O(20B) 2.953(5) Å. Symmetry equivalents: A, x, y + 1, z + 1; B, x − 1, y − 1, z; C, x + 1, y + 1, z; E, x, y − 1, z − 1. |
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Scheme 2 |
The structure of complex 9 is shown in Fig. 7, with conformational parameters in Table 1.
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Fig. 7 The structure of the polymeric complex [Ag(CF3CO2){C4H2S(CONHCH2-3-C5H4N)2}n, 9: above, part of the double stranded polymer formed by Ag⋯Ag interactions (trifluoroacetate groups are omitted for clarity); below, the sheet structure formed through further supramolecular association involving C![]() |
In complex 9, the conformation of the ligand is similar to that of the free ligand 7, except for differences in rotation of the pyridylmethyl groups (Table 1, Fig. 6 and 7). This conformation is naturally suited to form the observed polymeric complex 9, with the intrachain separation Ag⋯Ag = 18.2 Å. The polymers undergo supramolecular association to form a sheet structure, by a combination of secondary bonding interactions. First, pairs of polymer chains associate through Ag⋯Ag interactions to form a double stranded polymer [Ag⋯Ag = 3.176(2) Å, Fig. 7, top]. Next, the double stranded polymers associate through forming weak coordinate bonds and hydrogen bonds to neighboring chains. Thus, each ligand forms two CO⋯HN hydrogen bonds (one as donor and one as acceptor), and also an Ag⋯O⋯HN hydrogen bond involving a trifluoroacetate anion, which, through a single oxygen atom O(41), coordinates to a silver atom in one chain [Ag⋯O(41) 2.63(1) Å] and forms a hydrogen bond to an NH group of a ligand in a neighboring chain [N(28)⋯O(41) = 2.77(1) Å, Fig. 7, bottom). There are no secondary bonding interactions of the type (thiophene)S⋯Ag.
Complex | Intramolecular Ag⋯Ag | Intermolecular Ag⋯Ag |
---|---|---|
8a | 3.33 | 3.55 |
3.06 | ||
8b | 3.14 | 3.48 |
3.04 | ||
8c | 3.42 | 3.70 |
3.60 | ||
9 | 3.18 |
The preferred trans stereochemistry of the amide unit in ligand 7 (Fig. 6) naturally gives a greater tendency to polymer formation with silver(I), when compared to ligand 6. Only one complex crystallized well, but the trifluoroacetate complex 9 was indeed a polymer and not a macrocycle. Complex 9 is of interest because of the many potential forms of secondary bonding that could be formed. The structure (Fig. 7) reveals the presence of Ag⋯Ag argentophilic bonds, CO⋯HN and CF3C(
O)O⋯HN hydrogen bonds, and CF3C(
O)O⋯Ag secondary coordinate bonds, but no secondary bonding interactions of the type (thiophene)S⋯Ag. From the structural data alone, it is not clear what the relative strengths of the individual secondary bonding interactions are, and it is presumed that the polymer chains are arranged so as to give the maximum combined secondary bonding interactions. The outcome is different in the packing of the polymer chains of 8d [Ag⋯S, but no Ag⋯Ag] and 9 [Ag⋯Ag, but no Ag⋯S].
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Chart 3 |
Similarly were prepared: [Ag2(µ-6)2][NO3]2, 8b, using [AgNO3] (0.014 g; 0.085 mmol). Yield: 0.036 g (41%). NMR in CD3OD: δ(1H) = 8.62 [d, 8H, JHH = 7 Hz, H2’], 7.82 [d, 8H, JH–H = 7 Hz, H3’], 7.31 [s, 4H, H3], 3.64 [s, 12H, CH3]. Anal. Calcd for C36H32Ag2N10O10S2·3CH2Cl2: C, 36.05; H, 2.95; N, 10.78%. Found: C, 35.64; H, 2.69; N, 11.67%. Colourless plates of 8b·CH2Cl2 were grown by slow diffusion of a concentrated solution of 6 in CH2Cl2 into a solution of AgNO3 in MeOH/thf. [Ag2(µ-6)2][CF3SO3]2, 8c from [AgO3SCF3] (0.022 g; 0.085 mmol). Yield: 0.042 g (40%). NMR in CD3OD: δ(1H) = 8.57 [d, 8H, H2’, JHH = 5 Hz], 7.63 [dd, 8H, JHH = 2 Hz, 5 Hz, H3’], 7.10 [s, 4H, H3], 3.56 [s, 12H, CH3]. Anal. Calcd for C38H32Ag2F6N8O10S4: C: 37.45; H: 2.65; N: 9.19%. Found: C: 36.94; H: 2.47; N: 8.87%. Colourless block crystals of 8c·acetone were grown by slow diffusion from a concentrated solution of 6 in CH2Cl2 into a solution of [AgO3SCF3] in acetone.
6·2HCl·4H2O: There is a plane of symmetry passing through the centre of the molecule and containing the oxygen atoms of the water molecules.
Compound | 6·2HCl·4H2O | 7 | 9.0.5acetone |
---|---|---|---|
Formula | C18H26Cl2N4O6S | C18H16N4O2S | C21.5H19AgF3N4O4.5S |
FW | 497.39 | 352.41 | 602.34 |
Temp./K | 150(2) | 150(2) | 150(2) |
λ/Å | 0.71073 | 0.71073 | 0.71073 |
Cryst. syst. | Orthorhombic | Triclinic | Triclinic |
Space gp. cell dimens. | Pnma | P-1 | P-1 |
a/Å | 8.3269(2) | 6.077(1) | 7.706(1) |
b/Å | 14.7324(5) | 7.346(1) | 12.748(2) |
c/Å | 19.1904(5) | 9.783(2) | 14.185(2) |
α/° | 90 | 102.253(8) | 112.983(7) |
β/° | 90 | 91.961(9) | 104.112(6) |
γ/° | 90 | 109.728(8) | 94.866(8) |
V/Å3 | 2354.2(1) | 399.1(1) | 1218.6(3) |
Z | 4 | 1 | 2 |
d(calc)/Mg m−3 | 1.403 | 1.466 | 1.642 |
Abs. Coeff./mm−1 | 0.405 | 0.224 | 0.973 |
F(000) | 1040 | 184 | 604 |
Ind. Refl. | 2162 | 1870 | 3492 |
Abs. Corr. | Integration | Integration | Integration |
Data/restr./param. | 2162/10/164 | 1870/3/227 | 3492/0/335 |
Goof | 1.109 | 1.136 | 1.078 |
R1 [I > 2σ(I)] | 0.087 | 0.043 | 0.064 |
wR2 [I > 2σ(I)] | 0.259 | 0.106 | 0.136 |
Compound | 8a·CH2Cl2 | 8b·CH2Cl2 | 8c·acetone | 8d·2CH2Cl2 |
---|---|---|---|---|
Formula | C41H34Ag2Cl2F6N8O8S2 | C37H34Ag2Cl2N10O10S2 | C41H38Ag2F6N8O11S4 | C20H20AgCl4F6N4O2PS |
FW | 1231.52 | 1129.50 | 1276.77 | 775.10 |
Temp./K | 150(2) | 150(2) | 150(2) | 150(2) |
λ/Å | 0.71073 | 0.71073 | 0.71073 | 0.71073 |
Cryst. syst. | Triclinic | Triclinic | Triclinic | Monoclinic |
Space gp. cell dimens. | P-1 | P-1 | P-1 | P21/n |
a/Å | 11.6130(5) | 11.644(1) | 13.4354(5) | 11.5598(3) |
b/Å | 14.0366(5) | 12.935(2) | 13.9401(7) | 19.7777(5) |
c/Å | 16.2974(6) | 15.592(2) | 16.2085(9) | 12.8335(3) |
α/° | 65.287(2) | 68.512(6) | 108.136(2) | 90 |
β/° | 81.037(2) | 76.221(7) | 97.541(3) | 109.256(2) |
γ/° | 72.264(2) | 73.795(6) | 117.121(2) | 90 |
V/Å3 | 2297.3(1) | 2074.0(4) | 2430.1(2) | 2769.9(1) |
Z | 2 | 2 | 2 | 4 |
d(calc)/Mg m−3 | 1.780 | 1.809 | 1.745 | 1.859 |
Abs. Coeff./mm−1 | 1.146 | 1.245 | 1.067 | 1.315 |
F(000) | 1228 | 1132 | 1280 | 1536 |
Ind. Refl. | 10374 | 7138 | 8518 | 4883 |
Abs. Corr. | Integration | Integration | Integration | Integration |
Data/restr./param. | 10374/0/623 | 7138/0/568 | 8518/0/649 | 4883/0/352 |
Goof | 1.060 | 0.958 | 1.037 | 1.073 |
wR1 [I > 2σ(I)] | 0.041 | 0.062 | 0.076 | 0.049 |
wR2 [I > 2σ(I)] | 0.090 | 0.150 | 0.205 | 0.134 |
7: The molecule is chiral in space group P-1 and the correct choice was confirmed by the absolute structure parameter.
8a·CH2Cl2, 8b·CH2Cl2 and 8c·acetone: There are two independent macrocycles, each of which contain a centre of symmetry.
8d·2CH2Cl2: No unusual features were observed.
9·0.5acetone: The crystal was twinned and the twinning was treated using the program ROTAX.
CCDC reference numbers 604509–604515.
For crystallographic data in CIF or other electronic format see DOI: 10.1039/b605340h
This journal is © The Royal Society of Chemistry 2006 |