Aigars
Piruska
a,
Irena
Nikcevic
a,
Se Hwan
Lee
b,
Chong
Ahn
b,
William R.
Heineman
a,
Patrick A.
Limbach
a and
Carl J.
Seliskar
*a
aDepartment of Chemistry, University of Cincinnati, PO Box 210172, Cincinnati, OH 45221, USA. E-mail: carl.j.seliskar@uc.edu; Fax: +1 513 556 9239; Tel: +1 513 556 9213
bDepartment of Electrical and Computer Engineering and Computer Science, University of Cincinnati, PO Box 210030, Cincinnati, OH 45221, USA
First published on 1st November 2005
Plastic materials have the potential to substitute for glass substrates used in microfluidic and μTAS systems adding flexibility in materials' choices. Optical quality plastic materials with a low autofluorescence are crucial for optimal detection by fluorescence and laser induced fluorescence techniques. This paper summarizes a series of optical investigations on commercially available plastic chip materials (PMMA, COC, PC, PDMS) and chips made from those materials. Intrinsic optical constants of plastic materials—refractive index for bulk materials—determined by spectroscopic ellipsometry and transmission spectroscopy in the visible range are presented. The laser-induced autofluorescence of materials and chips was assessed at four laser wavelengths, namely, 403, 488, 532 and 633 nm. Considerable bleaching of the autofluorescence was observed under continuous laser illumination. Overall, the longer wavelength laser excitation sources yielded less autofluorescence. PDMS exhibited the least autofluorescence and was comparable to BoroFloat glass. In all cases, chips exhibited slightly higher autofluorescence than the raw plastic materials from which they had been made.
Only a few reports have been devoted to autofluorescence in plastic materials. Hawkins and Yager4 studied the autofluorescence of various plastic materials with broadband light source excitation. Continuous illumination led to a reduction of autofluorescence with complex kinetics over the period of hundreds of minutes. Even though autofluorescence can be reduced under these conditions, the slow autofluorescence reduction (bleaching) made it impractical to use as a chip pretreatment. These authors concluded that polycarbonate, poly(methylmethacrylate) (PMMA, Rohaglas) and polyolefine (Topas) were the materials with the lowest levels of autofluorescence. Soper and co-workers5,6 have shown that using dye-labeled analytes with laser excitation and time-resolved fluorescence in the near-infrared reduced the influence of autofluorescence on analytical measurements done on-chip. Laser excitations at 488, 680 and 780 nm were used and plastic materials exhibited a lower autofluorescence when excited at the two longer wavelengths. In this case, PMMA and polycarbonate samples exhibited autofluorescence levels comparable to glass.5
Our group is developing high throughput chip-based assays for trace determination and measurements of the physiochemical properties of drug candidates. Assays transferred from reusable glass chips to cheaper disposable plastic chips would eliminate lengthy cleaning steps between analyses and avoid potential cross contamination, thus increasing overall throughput of the process. Due to its excellent sensitivity, laser-induced fluorescence (LIF) is our main detection method for analyses. Even though LIF requires a fluorescent analyte and cannot directly be used as a universal detection method, there are well known dependable techniques for labeling biomolecules with high quantum yield fluorophores.
The purpose of this paper is to report an evaluation of the optical constants and the autofluorescence of several candidate plastic materials and the associated chips that we have made from them. The material autofluorescence under laser excitation at several wavelengths and powers was studied and the kinetics of the bleaching of this intensity have been quantitatively described. Plastic materials are compared to BoroFloat glass, a common substrate for chip fabrication with a low autofluorescence under LIF.
Transmission spectra of materials were recorded on a HP 8453 diode array spectrophotometer and refractive indices determined on a variable angle spectroscopic ellipsometer (J.A.Woollam, Inc.).
To examine how the autofluorescence changed with microscope objective-to-sample distance the following procedure was used. The sample was placed on the calibrated microscope stage and the positions of the bottom and top sample surfaces located. Then the objective was backed off from the sample (image plane closer to the objective than the sample bottom surface). The objective was then moved toward the sample in 250 µm steps and the autofluorescence signal recorded continuously.
The long term recovery of material autofluorescence was examined in the following way. A sample was aligned and illuminated for 10 min as described above. The same spot was then illuminated for an additional 10 min approximately 12 h later while recording the autofluorescence.
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Fig. 1 The transmission spectra taken at normal incidence of the plastic materials are shown. Top panel: (A) – 0.25 mm, (B) – 3.0 mm and (C) – 5.0 mm PMMA. Bottom panel: (D) – BoroFloat, (E) – COC, (F) – 0.25 mm and (G) – 2.0 mm PC, (H) – PDMS. |
Sample | λ/nm | ||||
---|---|---|---|---|---|
403 | 488 | 532 | 633 | ||
Materials | BoroFloat | 1.494 | 1.483 | 1.480 | 1.475 |
PMMA 0.25 | 1.621 | 1.599 | 1.592 | 1.581 | |
PMMA 3.0 | 1.495 | 1.490 | 1.488 | 1.486 | |
PMMA 5.0 | 1.506 | 1.496 | 1.493 | 1.488 | |
PC 0.25 | 1.620 | 1.598 | 1.591 | 1.580 | |
PC 2.0 | 1.627 | 1.602 | 1.594 | 1.582 | |
COC | 1.544 | 1.534 | 1.530 | 1.525 | |
PDMS | 1.428 | 1.418 | 1.415 | 1.410 | |
Chips | PMMA IM | 1.510 | 1.498 | 1.495 | 1.489 |
PC IM | 1.636 | 1.612 | 1.604 | 1.592 |
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Fig. 2 Autofluorescence of COC with 488 nm excitation at 1 (B), 3 (C) and 5 (D) mW laser power. BoroFloat autofluorescence at 1 mW (A) is shown for comparison. |
The comparison of the autofluorescence of several materials is shown in Fig. 3. The absolute response of the PMT for BoroFloat at each excitation wavelength is shown in the inset in Fig. 3. The autofluorescence intensity of all materials is indicated relative to the autofluorescence of BoroFloat at a particular excitation wavelength and represents the autofluorescence of the material after 60 s of continuous laser illumination (indicated by vertical line in Fig. 2). The presentation of autofluorescence intensity after 60 s of illumination was chosen for two reasons. First, this time period allowed the autofluorescence to approach steady state. Second, such an illumination period could be used to optically pre-treat the detection spot prior to an analysis.
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Fig. 3 Autofluorescence of plastic materials under 1 mW laser power after 60 s of illumination. Intensity is relative to BoroFloat under the same conditions. The absolute intensity of BoroFloat autofluorescence is shown in the inset. |
A few general conclusions follow from these measurements. First, the BoroFloat autofluorescence was slightly higher (∼3 times) at 403 nm than the essentially constant level at other laser excitation wavelengths. Second, for most plastic materials the autofluorescence tended to decrease as laser excitation wavelength increased. The most dramatic decrease was observed in going from 403 to 488 nm laser irradiation. Third, the lowest autofluorescence was exhibited by PDMS. At 633 nm excitation, it was comparable with BoroFloat; at other wavelengths 2 to 3 times higher than BoroFloat. Additionally, PDMS exhibited an essentially constant, invariant to illumination, glass-like autofluorescence. The rest of the materials had autofluorescence levels ∼3 to 5 times higher than BoroFloat, except for 403 nm excitation where the autofluorescence for any plastic material was significantly higher than BoroFloat. Even though the thin 0.25 mm PC was comparable to PMMA and COC materials, the thicker 2.0 mm PC material exhibited significantly higher autofluorescence (not shown in figure). The least difference was observed at 633 nm excitation where 2.0 mm PC autofluorescence exceeded BoroFloat by ∼40 times. The difference was even larger at shorter excitation wavelengths.
The results presented are typical of these plastic materials. In certain cases, considerable spot-to-spot variation of the autofluorescence was observed. To examine the nature of these variations we evaluated how optical alignment with the material influenced the measured autofluorescence. Autofluorescence was recorded varying the vertical positions of the microscope objective relative to the sample. Typical results are presented in Fig. 4. The two vertical lines in the figure represent the top (on the right) and bottom (left) surfaces of sample. The lowest autofluorescence was observed when excitation was focused into the bulk of the material. In this case the autofluorescence intensity was significantly diminished by material bleaching due to the high power density inside the material. The magnitudes of the intensity variations agreed well with the analyses of dynamic data. Thus, the vertical alignment was one of the important factors that affected the autofluorescence signal observed. The sample surface and bulk material defects and illumination history were other factors that influenced the measurement reproducibility.
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Fig. 4 The autofluorescence of COC as a function of distance normal to the surface of the material. ● represents experimentally determined points, the dashed line is provided to guide the eye. The positions of the back and front surfaces of the material are indicated. The horizontal axis indicates the image plane relative to the bottom surface (sample surface closest to objective). The COC physical thickness (nominally 1 mm) is larger than the apparent thickness (∼0.5 mm) because of the difference in the refractive index between air and the plastic material. The apparent thickness is 1/n times the physical thickness, where n is the refractive index of the material. |
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Fig. 5 The relative autofluorescence of plastic chips under 1 mW of laser power after 60 s of illumination (intensity relative to BoroFloat). |
Overall, the autofluorescence of chips exhibited trends similar to the associated materials. The shorter the laser excitation wavelength, the higher the autofluorescence of chips observed. The only exception was the PMMA injection molded chip that showed a significant increase in autofluorescence when excited at 633 nm. This behavior was unexpected and the cause of this behavior remains unclear to us.
The vertical alignment of the focus point of the laser (discussed in more detail for materials previously) led to significant variation in the autofluorescence measurements. The standard deviation of the autofluorescence signal was determined for all chips at 488 nm excitation and typically was from 10 to 20%. The autofluorescence intensity at 488 nm shown in Fig. 5 is the average of 5 measurements; the associated error bars represent standard deviations for these measurements.
The important thing to note is the difference in autofluorescence intensities between Fig. 3 and 5. In general, all plastic chips studied had higher autofluorescence levels than the associated materials. For most of the materials, autofluorescence was 3 to 5 times higher than BoroFloat. On the other hand chips exhibited approximately 5 to 10 times higher autofluorescence levels than BoroFloat. The PMMA chips showed the lowest autofluorescence levels followed by COC and then PC chips. Due to its physical properties PDMS is not an appropriate material for our applications and no attempt was made to characterize a PDMS chip. Nonetheless, superior chip autofluorescence levels might be anticipated based on our PDMS material studies.
For all samples (materials and chips) studied three different decay components were sufficient to characterize the dynamics of the autofluorescence bleaching. The BoroFloat and PDMS materials exhibited the lowest autofluorescence variations and could be fitted with fewer exponential decay terms. Since our main interest was in the properties of fabricated chips, we have chosen to present the data for chips, PDMS, and the reference glass BoroFloat. Even though the mechanical properties of PDMS are not appropriate for our needs, its excellent autofluorescence properties are worth noting. Additionally, the chip dynamic data are a good representation of the autofluorescence dynamics of the materials, the main difference being that materials have relatively lower magnitudes of the fitting terms. Table 2 summarizes the fit parameters for all chips and selected materials along with the associated correlation coefficients and χ2 values to indicate the goodness of the fits.
Sample | 403 nm | 488 nm | 532 nm | 633 nm | ||||
---|---|---|---|---|---|---|---|---|
a χ 2; b R 2; c A 0; d A 1; e A 2; f A 3; g T 1; h T 2; i T 3, this pattern is used throughout the table. | ||||||||
BoroFloat | 3.1 × 10−5a | 0.635b | 4.9 × 10−7 | 0.441 | 7.1 × 10−7 | 0.759 | 6.0 × 10−7 | 0.395 |
0.124c | 0.024 | 0.032 | 0.028 | |||||
0.038d | 5.6g | 0.003 | 9.2 | 0.006 | 11.6 | 0.003 | 15.1 | |
—e | —h | — | — | — | — | — | — | |
—f | —i | — | — | — | — | — | — | |
PDMS | 6.9 × 10−5 | 0.941 | 7.7 × 10−7 | 0.896 | 1.1 × 10−6 | 0.865 | 5.5 × 10−7 | 0.334 |
0.308 | 0.036 | 0.043 | 0.025 | |||||
0.182 | 2.0 | — | — | — | — | — | — | |
0.122 | 22 | 0.011 | 11 | — | — | — | — | |
0.073 | 319 | 0.008 | 170 | 0.011 | 129 | 0.002 | 127 | |
COC IM chip | 9.3 × 10−4 | 0.996 | 7.2 × 10−6 | 0.997 | 6.9 × 10−6 | 0.998 | 2.1 × 10−6 | 0.989 |
1.176 | 0.164 | 0.199 | 0.071 | |||||
3.397 | 1.1 | 0.211 | 2.1 | 0.172 | 2.4 | 0.025 | 2.6 | |
1.850 | 15 | 0.146 | 24 | 0.148 | 27 | 0.035 | 23 | |
1.209 | 178 | 0.106 | 233 | 0.146 | 242 | 0.039 | 222 | |
PMMA IM chip | 1.8 × 10−4 | 0.990 | 3.8 × 10−6 | 0.995 | 5.2 × 10−6 | 0.997 | 2.6 × 10−5 | 0.998 |
0.481 | 0.088 | 0.156 | 0.510 | |||||
1.336 | 0.7 | 0.168 | 1.5 | 0.166 | 2.2 | 0.276 | 0.9 | |
0.593 | 11 | 0.106 | 17 | 0.127 | 23 | 0.206 | 24 | |
0.318 | 153 | 0.061 | 172 | 0.101 | 229 | 0.361 | 307 | |
PMMA HE chip | 6.7 × 10−4 | 0.998 | 3.4 × 10−6 | 0.991 | 3.2 × 10−6 | 0.995 | 1.8 × 10−6 | 0.971 |
1.439 | 0.119 | 0.125 | 0.063 | |||||
1.706 | 1.7 | 0.084 | 2.0 | 0.073 | 2.9 | 0.019 | 7.3 | |
1.281 | 25 | 0.061 | 21 | 0.066 | 28 | 0.016 | 69 | |
1.546 | 214 | 0.048 | 206 | 0.062 | 236 | 0.020 | 515 | |
PC IM chip | 2.0 × 10−3 | 0.998 | 1.5 × 10−5 | 0.998 | 1.9 × 10−5 | 0.999 | 1.1 × 10−5 | 0.993 |
2.511 | 0.277 | 0.698 | 0.286 | |||||
5.185 | 1.3 | 0.321 | 2.2 | 0.191 | 4.3 | 0.035 | 3.2 | |
3.083 | 17 | 0.234 | 22 | 0.222 | 39 | 0.067 | 34 | |
2.234 | 205 | 0.179 | 212 | 0.345 | 333 | 0.125 | 279 |
It was pointed out earlier that BoroFloat exhibited essentially constant autofluorescence; this is reflected in the fitting parameters. The autofluorescence of BoroFloat could be described by just a single exponential decay term with short lifetime. More importantly, the magnitude is quite small in comparison with other values of the constant term A0. PDMS was the best of the studied plastic materials showing a somewhat similar behavior to BoroFloat. At the two longest wavelengths PDMS has only a single decay term with a low magnitude, but somewhat longer lifetime. For the two shortest wavelengths the results are more typical of the rest of the materials. More exponential decay terms were required and their magnitudes are comparable with the constant term A0.
The correlation coefficients for the fits deviated considerably from 1 for BoroFloat, PDMS and several other materials at longer wavelengths. In all these cases, changes of the autofluorescence were relatively small and, as a result, the magnitude of the constant term A0 dominated the other Ai terms. The changes in the recorded signal were comparable to the noise in the autofluorescence signal, thus yielding poor correlation coefficients despite reasonable fits to the data.
The autofluorescence dynamics of all chips are similar. The fitted decay time constants fall into three broad categories: short (0 to 6 s), medium (10 to 40 s), and long (120 to 500 s) times. A pattern was observed for autofluorescence at different excitation wavelengths. The shorter the excitation wavelength the larger in magnitude were all three decay terms. At 403 nm the total magnitude of the decay terms for any of the chips exceeded by several times the constant term A0. On the other hand, at longer wavelengths this ratio was reduced. Finally at 633 nm the sum of the decay terms was almost equal to the constant term.
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Fig. 6 Typical data for autofluorescence recovery over time; PC IM chip illuminated at 488 nm, 1 mW. The curve on the left represents the autofluorescence on initial illumination; the curve on the right, the one recorded after 12 hours of no laser illumination. |
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Fig. 7 Autofluorescence recovery for plastic microchips. All measurements were performed with 488 nm laser at 1 mW power. For definition of recovery, see text. |
Although our immediate interest has been to examine the possibility of quickly laser bleaching the autofluorescence of plastic chips before making analytical measurements, one might speculate as to the origin of the autofluorescence. It seems plausible that the autofluorescence arises from additives and impurities within the plastic materials themselves and, on fabrication, chip processing could introduce more of these. The finding that the autofluorescence bleaches to a steady-state value and recovers somewhat in time suggests that photolytic products of the bleaching might partially recombine restoring some of the initial autofluorescence. However, we hasten to add that one might offer other equally plausible explanations for this interesting and practically important behavior. Given the future of plastic materials in chip fabrication, it would be worthwhile to explore the origin of this behavior with the goal of further reducing the autofluorescence of freshly made chips.
This journal is © The Royal Society of Chemistry 2005 |