Christer B. Aakeröy, Alicia M. Beatty and Destin S. Leinen
Department of Chemistry, Kansas
State University, Manhattan, KS 66506, USA. E-mail: aakeroy@ksu.edu
The syntheses and crystal structures of a family of oxime-substituted pyridine ligands [py-C(R)NOH, where R = H, Me, Ph, or NH2] are presented. The compounds are all prepared in good yields by allowing a suitably substituted pyridine to react with hydroxylamine. Their solid-state structures show that the dominating hydrogen bond, a head-to-tail O–H⋯N interaction between the oxime O–H moiety and the pyridine nitrogen atom, is present in each of the seven reported cases. This intermolecular interaction generates infinite chains that are crosslinked into 2D or 3D assemblies by weaker C–H⋯N or C–H⋯O hydrogen bonds.
The oxime functionality is well known in organic synthesis,5 analytical chemistry,6 and coordination chemistry,7–10 yet it has remained relatively unexplored as an intermolecular connector in crystal engineering.11 However, recent work has shown how oxime pyridine derivatives can be utilized in the assembly of a variety of coordination complexes into extended networks.12,13 By itself, the oxime moiety can, in the absence of other hydrogen bond donors/acceptors, generate several low-dimensional networks through hydrogen bonds. Adjacent moieties can form a head-to-head R22(6) motif (resulting in discrete dimers), or a catemeric motif that can lead to either discrete multi-molecular rings or infinite chains, Scheme 1.
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| Scheme 1 Possible hydrogen bond motifs with oxime functionalities. | ||
From a crystal engineering perspective, the oxime moiety could be particularly appealing since it is electronically and sterically ‘tunable’; R and R′ can be modified to include a wide range of electron donors/acceptors or ‘inert’ spacers, and these functional groups are accessible through well-known synthetic methods.14
If the oxime functionality is attached to a moiety that can act as coordinating site for a metal ion, then a potential ‘bridge’ between coordination complexes and supramolecular assembly has been constructed, Scheme 2.
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| Scheme 2 Generic oxime-substituted pyridine ligand for crystal engineering of coordination complexes. | ||
Previous data demonstrate that the oxime functionality does enable the assembly of silver(I) ions via the dimeric head-to-head interaction to infinite silver(I) chains that are further propagated into 2D sheets via C–H⋯O hydrogen bonds, Fig. 1.
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| Fig. 1 Infinite cationic sheet in di(3-acetyloximepyridine)silver(I) hexafluorophosphate. | ||
The counter-ions are positioned between the cationic layers, and participate in weaker hydrogen bonds to the layer above and below. Structures of this type demonstrate that supramolecular synthesis using the oxime functionality can provide predictable structural arrangements where coordination complexes are directed into ordered networks by relatively weak forces working in concert. As part of this process, it is necessary to (i) synthesize and characterize a range of new ligands and (ii) to determine their solid-state behavior and hydrogen bond patterns in the absence of metal-ions. In this paper we present the syntheses of five oxime-substituted pyridine ligands, and the crystal structures of seven such compounds.
°C. 1H
NMR: δH (400 MHz; DMSO-d6)
2.15(3H, s), 7.37–7.40(1H, dd), 7.97–7.99(1H, d), 8.52–8.53(1H,
d), 8.81(1H, s) and 11.45(1H, s). 13C NMR: δC
(200 MHz; DMSO-d6) 11.4, 123.4, 132.4, 132.8, 146.5,
149.3 and 151.0. Colorless, irregular prisms suitable for X-ray diffraction
were grown from a saturated solution of 3
in methylene chloride.
°C. 1H
NMR: δH (400 MHz; DMSO-d6)
2.13(3H, s), 7.57–7.58(2H, d), 8.54–8.56(2H, d) and 11.68(1H,
s). 13C NMR: δC (200 MHz; DMSO-d6)
11.0, 119.8, 143.8, 149.7 and 151.4. Colorless, irregular prisms suitable
for X-ray diffraction were grown from a saturated solution of 4 in methylene chloride.
°C. 1H NMR: δH
(400 MHz; DMSO-d6) 5.98(2H, s), 7.61–7.62(2H,
d), 8.54–8.55(2H, d) and 10.04(1H, s). 13C NMR: δC
(200 MHz; DMSO-d6) 119.5, 140.4, 148.7 and 149.5. Colorless
prisms suitable for X-ray diffraction were grown from a saturated solution
of 5 in absolute ethanol.
°C. 1H
NMR: δH (400 MHz; DMSO-d6)
7.29–7.31(2H, d), 7.38(5H, s), 8.68–8.69(2H, d) and 11.67(1H,
s). 13C NMR: δC (200 MHz; DMSO-d6)
123.5, 126.6, 128.5, 129.2, 135.1, 141.2, 149.6 and 153.1. Colorless, rectangular
prisms suitable for X-ray diffraction were grown from a saturated solution
of 6 in methanol.
°C. 1H
NMR: δH (400 MHz; DMSO-d6)
7.37(5H, s), 7.46–7.50(1H, m), 7.69–7.72(1H, d), 8.47(1H, s),
8.58–8.60(1H, d) and 11.59(1H, s). 13C NMR: δC
(200 MHz; DMSO-d6) single isomer: 123.4, 126.8, 128.4,
129.1, 129.2, 135.9, 136.6, 149.1, 149.2, and 152.6; mixture of isomers: 123.4,
126.8, 128.3, 128.5, 128.7, 128.8, 129.1, 129.2, 129.7, 132.4, 132.5, 134.3,
135.9, 136.6, 147.6, 149.1, 149.3, 149.5, 152.7, and 153.0. Colorless prisms
suitable for X-ray diffraction were grown from a saturated solution of 7 in acetone.![]() | ||
| Fig. 2 Thermal ellipsoid plots of (a) 2-aldoximepyridine, 1; (b) 3-aldoximepyridine, 2; (c) 3-acetyloximepyridine, 3; (d) 4-acetyloximepyridine, 4; (e) 4-amidoximepyridine, 5; (f) 4-benzoyloximepyridine, 6; and (g) 3-benzoyloximepyridine, 7. Click images or compound numbers to access 3D representations. | ||
| Crystal data | 1 | 2 | 3 |
|---|---|---|---|
| a Click b006043g.txt for full crystallographic data (CCDC no. 1350/33). | |||
| Empirical formula | C6H6N2O | C6H6N2O | C7H8N2O |
| M | 122.13 | 122.13 | 136.15 |
| Crystal size/mm3 | 0.62 × 0.36 × 0.24 | 0.24 × 0.22 × 0.22 | 0.46 × 0.40 × 0.28 |
| Crystal system | Monoclinic | Orthorhombic | Monoclinic |
| Space group | P2(1)/c | Pna2(1) | C2/c |
| a/Å | 16.407(2) | 19.014(2) | 12.8175(9) |
| b/Å | 8.4341(7) | 3.8296(4) | 9.627(2) |
| c/Å | 9.0196(8) | 8.1179(8) | 11.420(1) |
| α/° | 90 | 90 | 90 |
| β/° | 105.758(7) | 90 | 91.918(6) |
| χ/° | 90 | 90 | 90 |
| V/Å3 | 1201.2(2) | 591.1(1) | 1408.4(3) |
| Z | 8 | 4 | 8 |
| μ(Mo-Kα)/mm−1 | 0.096 | 0.098 | 0.089 |
| T/K | 173(2) | 173(2) | 173(2) |
| Reflections collected | 2253 | 1103 | 1090 |
| Unique reflections | 2102 | 815 | 1039 |
| Observed reflections (I > 2σI) | 1399 | 639 | 893 |
| R/Rw2 (obs. data) | 0.0481/0.1091 | 0.0446/0.0900 | 0.0418/0.1085 |
| R/Rw2 (all data) | 0.0825/0.1248 | 0.0646/0.0982 | 0.0487/0.1135 |
| Crystal data | 4 | 5 | 6 |
|---|---|---|---|
| a Click b006043g.txt for full crystallographic data (CCDC no. 1350/33). | |||
| Empirical formula | C7H8N2O | C6H7N3O | C12H10N2O |
| M | 136.15 | 137.15 | 198.22 |
| Crystal size/mm3 | 0.42 × 0.38 × 0.34 | 0.65 × 0.54 × 0.36 | 0.40 × 0.20 × 0.20 |
| Crystal system | Monoclinic | Orthorhombic | Monoclinic |
| Space group | P2(1)/c | Pna2(1) | P2(1)/c |
| a/Å | 6.3502(7) | 12.5433(6) | 5.7943(6) |
| b/Å | 14.296(1) | 8.7821(9) | 17.615(2) |
| c/Å | 7.6172(7) | 5.7857(4) | 10.271(1) |
| α/° | 90 | 90 | 90 |
| β/° | 91.622(5) | 90 | 99.290(8) |
| χ/° | 90 | 90 | 90 |
| V/Å3 | 691.2(1) | 637.33(8) | 1034.6(2) |
| Z | 4 | 4 | 4 |
| μ(Mo-Kα)/mm−1 | 0.091 | 0.103 | 0.083 |
| T/K | 173(2) | 173(2) | 173(2) |
| Reflections collected | 1717 | 803 | 2004 |
| Unique reflections | 1584 | 803 | 1817 |
| Observed reflections (I > 2σI) | 1159 | 775 | 1251 |
| R/Rw2 (obs. data) | 0.0521/0.1312 | 0.0286/0.0779 | 0.0507/0.1027 |
| R/Rw2 (all data) | 0.0756/0.1454 | 0.0300/0.0786 | 0.0860/0.1169 |
| Crystal data | 7 |
|---|---|
| a Click b006043g.txt for full crystallographic data (CCDC no. 1350/33). | |
| Empirical formula | C12H10N2O |
| M | 198.22 |
| Crystal size/mm3 | 0.50 × 0.25 × 0.06 |
| Crystal system | Monoclinic |
| Space group | P2(1)/n |
| a/Å | 5.649(1) |
| b/Å | 12.737(2) |
| c/Å | 14.507(2) |
| α/° | 90 |
| β/° | 96.33(1) |
| χ/° | 90 |
| V/Å3 | 1037.4(3) |
| Z | 4 |
| μ(Mo-Kα)/mm−1 | 0.083 |
| T/K | 173(2) |
| Reflections collected | 2614 |
| Unique reflections | 2382 |
| Observed reflections (I > 2σI) | 1084 |
| R/Rw2 (obs. data) | 0.0820/0.1795 |
| R/Rw2 (all data) | 0.1842/0.2279 |
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| Fig. 3 Infinite chain of 2-aldoximepyridine, 1. Click image or fig3.mol to access 3D representation. | ||
In the crystal structure of 2, infinite 1D chains are assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O7–N1 = 2.717(3) Å]. Adjacent chains are related by a glide plane, and the two chains are linked through a C–H⋯O [C2–O7 = 3.450(3) Å] hydrogen bond to form a 1D ribbon, Fig. 4. The ribbons are arranged in a herringbone motif and are hydrogen bonded to neighboring ribbons via C–H⋯N [C5–N7 = 3.659(4) Å] interactions to produce an overall 3D hydrogen bonded structure. All the oxime moieties within a ribbon point in the same direction, and all the ribbons, in turn, are aligned in a parallel fashion.
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| Fig. 4 Infinite ribbon of 3-aldoximepyridine, 2. Click image or fig4.mol to access 3D representation. | ||
In the structure of 3, the molecules form infinite 1D chains assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O7–N1 = 2.720(2) Å], Fig. 5. Additional C–H⋯N [C4–N7 = 3.481(2) Å] and C–H⋯O [C5–O7 = 3.246(2) Å] hydrogen bonds cross-link the 1D chains to produce a 3D hydrogen bonded infinite architecture.
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| Fig. 5 Infinite 1D chain of 3-acetyloximepyridine, 3. Click image or fig5.mol to access 3D representation. | ||
The crystal structure of 4 contains infinite 1D molecular chains assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O7–N1 = 2.711(2) Å]. The molecules comprising the chains are related by a 21 screw axis. Neighboring chains run anti-parallel to each other, Fig. 6. The chains are cross-linked via C–H⋯O hydrogen bonds [C6–O7 = 3.360(2) Å] resulting in 2D sheets. These sheets, which lie in the ac plane, stack to produce a lamellar structure. There are no hydrogen bond interactions between sheets.
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| Fig. 6 Infinite sheets of 4-acetyloximepyridine, 4. Click image or fig6.mol to access 3D representation. | ||
The crystal structure of 5 also contains infinite 1D chains assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O7–N1 = 2.745(2) Å]. The chains are cross-linked via C–H⋯N hydrogen bonds [C2–N8 = 3.682(2) Å] involving a pyridine C–H and the nitrogen atom of the amino group attached to the oxime functionality. This interaction results in the formation of infinite 2D sheets, Fig. 7. The sheets have a corrugated appearance and stack together. The 2D sheets are propagated into a 3D structure by additional N–H⋯N hydrogen bonds between the amino N–H and the oxime nitrogen atom [N8–N7 = 3.090(2) Å]. The overall structure is a 3D hydrogen bonded architecture.
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| Fig. 7 Infinite 2D sheet in 4-amidoximepyridine, 5. Click image or fig7.mol to access 3D representation. | ||
In 6, the molecules form infinite 1D chains assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O7–N1 = 2.749(2) Å]. Molecules within each chain are related by a 21 screw axis. Neighboring chains run parallelly, and are cross-linked by C–H⋯O hydrogen bonds [C6–O7 = 3.278(3) Å] to generate infinite 2D sheets, Fig. 8. The phenyl rings protrude above and below the corrugated 2D sheets and interdigitate as a result of close-packing; however, there are no short aryl–aryl contacts or hydrogen bonding interactions between sheets.
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| Fig. 8 Infinite 2D sheet in 4-benzoyloximepyridine, 6. Click image or fig8.mol to access 3D representation. | ||
Finally, in 7, the molecules form infinite 1D chains assembled through a head-to-tail O–H⋯N hydrogen bond involving the oxime O–H and the pyridine nitrogen atom [O(7)–N(1) = 2.737(4) Å]. The molecules within each chain are related by a 21 screw axis. The chains are cross-linked by C–H⋯N hydrogen bonds involving a phenyl C–H and the oxime nitrogen atom [C(24)–N(7) = 3.509(6) Å] to form infinite corrugated sheets, Fig. 9. The chains comprising each sheet run in an anti-parallel fashion. The corrugated sheets stack in a tongue-and-groove manner as a result of close packing; however, there are no hydrogen bonds between sheets.
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| Fig. 9 Infinite 2D sheet in 3-benzoyloximepyridine, 7. Click image or fig9.mol to access 3D representation. | ||
The crystal structures for 1–7 show that all the molecules have the antiperiplanar
conformation, with C
N–O–H torsion angles in the range of
166–180°. This conformation is more stable than the synplanar
conformation and is also required for hydrogen bond formation. In addition,
all molecules, except 6, display
a configuration where the oxime O–H is trans to the pyridyl
ring.
The dominating intermolecular interaction in all structures is a head-to-tail hydrogen bond from the oxime moiety to the pyridine nitrogen atom. Regardless of the R substituent of the oxime functionality (–H, –CH3, –NH2, or Ph), this interaction prevails and generates infinite 1D molecular chains in 1–7. A search of the CSD16 found other pyridineoxime derivatives17 where the same head-to-tail hydrogen bond is present in each case. More recently, two other oxime-substituted pyridines were also reported to display the very same interaction.18 This supports the conclusion that the pyridine nitrogen atom is a better hydrogen bond acceptor than the oxime nitrogen atom in these molecules.
While changing the nature of the R substituent does not affect the principle structural motif (i.e. chain formation) in 1–7, it does play a role in determining the structural outcome. This secondary influence may be attributed more to steric, rather than electronic, factors. For example, 3-aldoximepyridine crystallizes in the orthorhombic space group Pna21, while 3-acetyloximepyridine crystallizes in the monoclinic space group C2/c.
We have shown that pyridineoximes form infinite 1D chains in the solid-state assembled via a head-to-tail O–H⋯N hydrogen bond between the oxime O–H and the pyridine nitrogen atom. Although many options for assembly are possible (Scheme 1), the primary motif (i.e. chain formation) remains intact and dominates the crystal structures of 1–7. The O–H⋯N interaction not only reaffirms the notion of the best hydrogen bond donor pairing with the best acceptor,19 but also demonstrates the ability of a stronger hydrogen bond to dictate the structural outcome over weaker C–H⋯A interactions.
We have previously demonstrated the utility of the pyridineoximes as ‘building blocks’ ideally suited for the supramolecular synthesis of inorganic–organic hybrid materials due to the consistency in their primary hydrogen bond interactions (i.e. dimer formation). This work opens avenues into the organic solid-state, as the persistence of the O–H⋯N hydrogen bond provides for the controlled and predictable assembly of compounds displaying both oxime and pyridyl moieties.
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