Protein inclusion in lipid membranes: A theory based on the hypernetted chain integral equation

Abstract

A theory for describing the structure of the hydrocarbon chains around a protein inclusion embedded in a lipid bilayer is developed on the basis of the hypernetted chain integral equation formalism for liquids. The exact lateral density–density response function of the hydrocarbon core, which is extracted from a molecular dynamics simulation of a pure lipid bilayer, is used as input to the theory. Numerical calculations show that the average lipid order is perturbed over a distance of 25 to 30 Å around a hard repulsive cylinder of 5 Å radius representing an α-helical polyleucine protein inclusion. The lipid-mediated protein–protein interaction is calculated and is shown to be non-monotonic, being repulsive at an intermediate range but attractive at short range. It is found that the lipid matrix contributes a free energy well of 8 k_BT to the association of two cylindrical inclusions.

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