Abinitio quantum mechanical calculations of p Kas of isolated molecules and molecules undergoing chemical reactions: p Ka of acetic acid during α-proton abstraction

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Mikael Peräkylä


Abstract

Aqueous-phase proton affinities (PA(aq)) were calculated for 14 carboxylic acids, 15 amines, and 16 alcohols using abinitio quantum mechanically calculated gas phase proton affinities (PA(gas), MP2/6-31+G**//HF/6-31+G**) and relative solvation energies of the acid and its conjugate base (ΔΔGsolv, IPCM-HF/6-31+G**) calculated with the isodensity surface-polarised continuum model (PA(aq)=PA(gas)+ΔΔGsolv). After empirical linear scaling the correlation coefficients (r2) between the calculated and experimental pKas were 0.94–0.98 for the three groups of molecules. Carboxylic acids, amines and alcohols have different correlation equations indicating systematic errors in the calculated energies for molecules with different acidic groups. The linear equation for carboxylic acids was used to estimate the change in the pKa of the carboxyl group of acetic acid from the calculated 4.8 (pKa(exp)=4.6) of the reactant, acetic acid, to 13.3 of the product, enolate of carboxylic acid, during α-proton abstraction by methoxide. It was shown that the calculated PA(aq) values can be used to estimate pKas of isolated molecules and molecules undergoing chemical reactions.


References

  1. R. P. Bell, The Proton in Chemistry, Chapman and Hall, London, 1973 Search PubMed.
  2. T. H. Lowry and K. S. Richardson, Mechanism and Theory in Organic Chemistry, Harper & Row, New York, 1987 Search PubMed.
  3. W. L. Jorgensen and J. M. Briggs, J. Am. Chem. Soc., 1989, 111, 4190 CrossRef CAS.
  4. A.-S. Yang, M. R. Gunner, R. Sampogna, K. Sharp and B. Honig, Proteins: Struct. Funct., Genet, 1993, 15, 252 CAS.
  5. C. Lim, D. Bashford and M. Karplus, J. Phys. Chem., 1991, 95, 5610 CrossRef CAS.
  6. A. Warshel, Biochemistry, 1981, 20, 3167 CrossRef CAS.
  7. M. J. Potter, M. K. Gilson and J. A. McCammon, J. Am. Chem. Soc., 1994, 116, 10298 CrossRef CAS.
  8. E. Rajasekaran, B. Jayaram and B. Honig, J. Am. Chem. Soc., 1994, 116, 8238 CrossRef CAS.
  9. M. Peräkylä, J. Org. Chem., 1996, 61, 7420 CrossRef CAS.
  10. W. L. Jorgensen, J. M. Briggs and J. Gao, J. Am. Chem. Soc., 1987, 109, 6857 CrossRef CAS.
  11. J. Gao and J. J. Pavelites, J. Am. Chem. Soc., 1992, 114, 1912 CrossRef CAS.
  12. B. Yang, J. Wright, M. E. Eldefrawi, S. Pou and A. D. MacKerell, Jr., J. Am. Chem. Soc., 1994, 116, 8722 CrossRef CAS.
  13. D. J. Tannor, B. Marten, R. Murphy, R. A. Friesner, D. Sitkoff, A. Nicholls, M. Ringnalda, W. A. Goddard and B. Honig, J. Am. Chem. Soc., 1994, 116, 11875 CrossRef CAS.
  14. B. Marten, K. Kim, C. Cortis, R. A. Friesner, R. B. Murphy, M. N. Ringnald, D. Sitkoff and B. Honig, J. Phys. Chem., 1996, 100, 11775 CrossRef CAS.
  15. B. N. Dominy and C. L. Brooks, J. Phys. Chem. B, 1999, 103, 3765 CrossRef CAS.
  16. D. Qiu, P. S. Shenkin, F. P. Hollinger and W. C. Still, J. Phys. Chem. A, 1997, 101, 3005 CrossRef CAS.
  17. V. Dillet, J. Dyson and D. Bashford, Biochemistry, 1998, 37, 10298 CrossRef CAS.
  18. M. Peräkylä, J. Am. Chem. Soc., 1998, 120, 12895 CrossRef.
  19. M. J. Frisch, G. W. Trucks, H. B. Schlegel, P. M. W. Gill, B. G. Johnson, M. A. Robb, J. R. Cheeseman, T. A. Keith, G. A. Peterson, J. A. Montgomery, K. Rachavachari, M. A. Al-Laham, V. G. Zakrzewski, J. V. Ortiz, J. B. Foresman, J. Cioslowski, B. B. Stefanov, A. Nanayakkara, M. Challacombe, C. Y. Peng, P. Y. Ayala, W. Chen, M. W. Wong, J. L. Andres, E. S. Replogle, R. Gomperts, R. L. Martin, D. J. Fox, J. S. Binkley, D. J. Defrees, J. Baker, J. J. P. Stewart, M. Head-Gordon, C. Gonzales and J. A. Pople, Gaussian 94 (Revision D.3.), Gaussian Inc. Pittsburgh, PA, 1995.
  20. J. Tomasi and M. Persico, Chem. Rev., 1994, 94, 2027 CrossRef CAS.
  21. K. B. Wiberg, P. R. Rablen, D. J. Rush and T. A. Keith, J. Am. Chem. Soc., 1995, 117, 4261 CrossRef CAS.
  22. C. Gonzales and H. B. Schlegel, J. Phys. Chem., 1990, 94, 5523 CrossRef CAS.
  23. K. Fukui, Acc. Chem. Res., 1981, 14, 363 CrossRef CAS.
  24. W. J. Hehre, L. Radom, P. von Ragué Schleyer and J. A. Pople, Ab Initio Molecular Orbital Theory, Wiley, New York, 1986 Search PubMed.
  25. S. L. Dixon and P. C. Jurs, J. Comput. Chem., 1993, 14, 1460 CAS.
  26. C. F. Bernasconi, Adv. Phys. Org. Chem., 1992, 27, 119 CAS.
  27. J. A. Gerlt and P. G. Gassman, J. Am. Chem. Soc., 1992, 114, 5928 CrossRef CAS.
  28. W. W. Cleland and M. M. Kreevoy, Science (Washington, D.C.), 1994, 264, 1887 Search PubMed.
  29. J. A. Gerlt and P. G. Gassman, Biochemistry, 1993, 32, 11943 CrossRef CAS.
  30. A. Bagno, V. Lucchini and G. Scorrano, J. Phys. Chem., 1991, 95, 345 CrossRef CAS.
  31. A. Levi, G. Modena and G. Scorrano, J. Am. Chem. Soc., 1974, 96, 6585 CrossRef CAS.
  32. J. P. Guthrie, Can. J. Chem., 1987, 65, 1951 CAS.
  33. M. Peräkylä, J. Phys. Chem., 1996, 100, 3441 CrossRef.
  34. M. Peräkylä, Chem. Commun., 1996, 361 RSC.
  35. M. Peräkylä, J. Chem. Soc., Perkin Trans. 2, 1997, 2185 RSC.
  36. A. J. Mulholland and W. G. Richards, Proteins: Struct., Funct. Genet., 1997, 27, 9 CrossRef CAS.
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