Theoretical investigations of conformational aspects of polymorphism. Part 1: o-acetamidobenzamide

(Note: The full text of this document is currently only available in the PDF Version )

David Buttar, Michael H. Charlton, Robert Docherty and Jonathan Starbuck


Abstract

o-Acetamidobenzamide crystallises in two polymorphs designated α and β. In the α-polymorph an intramolecular hydrogen bond is present, which is not found in the conformation adopted in the β-polymorph. The geometries of the molecules found in the crystal structures have been studied in detail using molecular mechanics, semi empirical and ab initio quantum chemistry techniques. Conformational energy differences have been evaluated, and gas phase potential energy surfaces generated to explore the conformational freedom of o-acetamidobenzamide.

It has been found that both observed solid state conformations occur close to, but not actually at, minima on the calculated gas phase potential energy surfaces. Conformational energy differences of 8–10 kcal mol–1 have been found between the conformers found in the crystals, depending on the method used for the calculation. Based on lattice energy calculations for both polymorphs it would appear that the less stable conformation is not compensated for by an equivalent stabilisation of the crystal lattice. The total (intra- and inter-molecular) energy difference between polymorphs is greater than that conventionally accepted.

The difficulties of using theoretical tools in conformational studies and the implications of our findings for ab initio crystal structure prediction are discussed.


References

  1. W. C. McCrone, Physics and Chemistry in the Organic State, ed. D. Fox, M. M. Labes and A. Weissberger, Interscience, New York, 1965, vol. 2, p. 726 Search PubMed.
  2. F. H. Allen, O. Kennard and R. Taylor, Acc. Chem. Res., 1983, 16, 146 CrossRef CAS.
  3. G. R. Desiraju and J. A. R. P. Sarma, NATO ASI Summer School, Halifax, Nova Scotia, 1996(proceedings to be published).
  4. O. August, The Times, July 08, 1996 Search PubMed.
  5. O. Okada and M. L. Klein, J. Chem. Soc., Faraday Trans., 1996, 92, 2463 RSC.
  6. J. D. Dunitz, Pure Appl. Chem., 1991, 63, 177 CrossRef CAS.
  7. H. R. Karfunkel and R. J. Gdanitz, J. Comput. Chem., 1992, 13, 1771 CrossRef CAS.
  8. J. R. Holden, Z. Du and L. Ammon, J. Comput. Chem., 1993, 14, 422 CrossRef CAS.
  9. A. Gavezzotti, J. Am. Chem. Soc., 1991, 113, 4622 CrossRef CAS.
  10. R. Docherty and W. Jones, Organic Molecular Solids, Properties and Applications, ed. W. Jones, CRC Press, New York, 1997 Search PubMed.
  11. K. D. M. Harris, M. Tremayne, P. Lightfoot and P. G. Bruce, J. Am. Chem. Soc., 1994, 116, 3543 CrossRef CAS.
  12. R. B. Hammond, K. J. Roberts, R. Docherty, M. Edmondson and R. Gairns, J. Chem. Soc., Perkin Trans. 2, 1996, 1527 RSC.
  13. I. Weissbuch, L. Leiserowitz and M. Lahav, Adv. Mater., 1994, 6, 952 CrossRef CAS.
  14. R. J. Davey, N. Blagden, G. D. Potts and R. Docherty, J. Am. Chem. Soc., 1997, 119, 1767 CrossRef CAS.
  15. J. Bernstein and A. T. Hagler, J. Am. Chem. Soc., 1978, 100, 673 CrossRef CAS.
  16. J. J. Wolff, Angew. Chem., Int. Ed. Engl., 1996, 35, 2195 CrossRef CAS.
  17. G. R. Desiraju, Crystal Engineering—The Design Of Organic Solids, Elsevier, Amsterdam, 1989 Search PubMed.
  18. A. I. Kitaigorodski, Molecular Crystals and Molecules, Academic Press, New York, 1973 Search PubMed.
  19. Y. K. Kang, J. Phys. Chem., 1996, 100, 11 589 CrossRef CAS.
  20. W. R. Rocha and W. B. De Almeida, J. Comput. Chem., 1997, 18, 254 CrossRef CAS.
  21. K. Gundertofte, T. Liljefors, P. O. Norrby and I. Pettersson, J. Comput. Chem., 1996, 17, 429 CrossRef CAS.
  22. J. Llano and L. A. Montero, J. Comput. Chem., 1996, 17, 1371 CrossRef CAS.
  23. MOPAC93, QCPE program 455. Quantum Chemistry Program Exchange (QCPE), Creative Arts Building 181, Indiana University, Bloomington, Indiana 47405.
  24. M. J. S. Dewar, E. G. Zoebisch, E. F. Healy and J. J. P. Stewart, J. Am. Chem. Soc., 1985, 107, 3902 CrossRef.
  25. J. J. P. Stewart, J. Comput. Chem., 1989, 10, 209 CrossRef CAS.
  26. A. Banerjee, N. Adams, J. Simons and R. Shepard, J. Phys. Chem., 1985, 89, 52 CrossRef CAS.
  27. GAMESS-UK is a package of ab initio programs written by M. F. Guest, J. H. van Lethe, J. Kendrick, K. Schoffel, P. Sherwood and R. J. Harrison, with contributions from R. D. Amos, R. J. Buenker, M. Dupuis, N. C. Handy, I. H. Hiller, P. J. Knowles, V. Bonacic-Koutecky, W. von Niessen, V. R. Saunders, A. Stone. The package is derived from the original GAMESS code due to M. Dupuis, D. Spangler and J. Wendoloski, NRCC Software Catalogue, Vol. 1, Program No. QG01 (GAMESS), 1980.
  28. S. L. Mayo, B. D. Olafson and W. A. Goddard III, J. Phys. Chem., 1990, 94, 8897 CrossRef CAS.
  29. SYBYL Molecular Modelling Software, Tripos Inc., 1699S. Hanley Rd., St. Louis, MO, USA.
  30. M. Clark, R. D. Cramer and N. Van Opdenbosch, J. Comput. Chem., 1989, 10, 982 CrossRef CAS.
  31. CERIUS Molecular Modelling Software, MSI/Biosym Inc., Cambridge, UK.
  32. K. Gundertofte, T. Liljefors, P. O. Norrby and I. Pettersson, J. Comput. Chem., 1996, 17, 429 CrossRef CAS.
  33. W. H. F. Smith and P. Wessel, Geophysics, 1990, 55, 293 Search PubMed.
  34. F. A. Momany, L. M. Carruthers, R. F. McGuire and H. A. Scherega, J. Phys. Chem., 1974, 78, 1595 CrossRef CAS.
  35. (a) R. Docherty, K. J. Roberts and G. Clydesdale, J. Crystal Growth, 1996, 166, 78 CrossRef CAS; (b) HABIT95, QCPE program 670. Quantum Chemistry Program Exchange (QCPE), Creative Arts Building 181, Indiana University, Bloomington, Indiana 47405.
  36. L. A. Errede, M. C. Etter, R. C. Williams and S. M. Darnauer, J. Chem. Soc., Perkin Trans. 2, 1981, 233 RSC.
  37. A. Gavezotti and G. Filippini, J. Am. Chem. Soc., 1995, 117, 12 299 CrossRef CAS.
  38. R. M. Stephenson and S. Malanowski, Handbook of The Thermodynamics of Organic Compounds, Elsevier, New York, 1987 Search PubMed; T. Gomez, L. Alfonso and R. Sabbah, Thermochim. Acta, 1982, 58, 311 Search PubMed.
  39. C. C. F. Blake and R. W. H. Small, Acta Crystallogr., Sect. B, 1972, 28, 2201 CrossRef CAS.
  40. M. H. Charlton, R. Docherty and M. G. Hutchings, J. Chem. Soc., Perkin Trans. 2, 1995, 2203 RSC.
  41. AMSOL5.4, QCPE program 606. Quantum Chemistry Program Exchange (QCPE), Creative Arts Buiding 181, Indiana University, Bloomington, Indiana 47405.
  42. D. A. Liotard, G. D. Hawkins, G. C. Lynch, C. J. Cramer and D. G. Truhlar, J. Comput. Chem., 1995, 16, 422 CrossRef CAS.
  43. D. J. Giesen, C. J. Cramer and D. G. Truhlar, J. Phys. Chem., 1995, 99, 7137 CrossRef CAS.
  44. F. H. Allen, S. E. Harris and R. Taylor, J. Comput.-Aided Mol. Des., 1996, 10, 247 Search PubMed.
  45. R. Payne, R. Roberts, R. Rowe and R. Docherty, J. Comput. Chem., 1998, 19, 1 CrossRef CAS.
Click here to see how this site uses Cookies. View our privacy policy here.