Issue 44, 2013

On the role of guests in enforcing the mechanism of action of gated baskets

Abstract

We designed and prepared a spacious and gated basket of type 2 (V = 318 Å3) in ten synthetic steps. With the assistance of 1H NMR spectroscopy, we found that the pyridine gates at the rim of 2 form a seam of N–H⋯N hydrogen bonds, thereby adopting right- (P) and left-handed (M) helical arrangements. The recognition characteristics of the smaller basket 1 (V = 226 Å3) and the larger 2 for various solvents as guests were quantified by 1H NMR spectroscopy in CD2Cl2 (61 Å3), CDCl3 (75 Å3), CFCl3 (81 Å3) and CCl4 (89 Å3); the apparent guest binding equilibria Ka were found to be inversely proportional to the affinity of bulk solvents KS for populating each host. The rate of the P/M racemization (krac, s−1) was, for both 1 and 2, studied in all four solvents using dynamic NMR spectroscopy. From these experiments, two isokinetic relationships (ΔSP/Mvs. ΔHP/M) were identified with each one corresponding to a different mechanism of P/M racemization. A computational study (B3LYP/6-31+G**//PM6) of 1 and 2 in the gas phase indicates two competing racemization pathways: (a) RM1–2 describes a pivoting of a single gate followed by the rotation of the remaining two gates, while (b) RM3 depicts simultaneous (geared) rotation of all three gates. The racemization of the larger basket 2, in all four solvents (packing coefficient, PC = 0.19–0.28), conformed to one isokinetic relationship, which also coincided with the operation of the smaller basket 1 in CD2Cl2 (PC = 0.27). However, in CDCl3, CFCl3 and CCl4 (PC = 0.33–0.39), the mode of action of 1 appears to correlate with a different isokinetic relationship. Thus, we propose that the population of the basket's inner space (PC) determines the mechanism of P/M racemization. When PC < 0.3, the mechanism of operation is RM1–2, whereas, a greater packing, represented when PC > 0.3, enforces the geared RM3 mechanistic alternative.

Graphical abstract: On the role of guests in enforcing the mechanism of action of gated baskets

Supplementary files

Article information

Article type
Paper
Submitted
07 Jul 2013
Accepted
03 Sep 2013
First published
04 Sep 2013

Org. Biomol. Chem., 2013,11, 7667-7675

On the role of guests in enforcing the mechanism of action of gated baskets

Y. Ruan, B. Wang, J. M. Erb, S. Chen, C. M. Hadad and J. D. Badjić, Org. Biomol. Chem., 2013, 11, 7667 DOI: 10.1039/C3OB41511B

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements