Issue 6, 2017

A theoretical study of the potential energy surfaces for the double proton transfer reaction of model DNA base pairs

Abstract

The excited-state double proton transfer (ESDPT) mechanism in a model DNA base pair, 7-azaindole (7AI) dimer, has been debated over the years. Recently, Otero and coworkers concluded that the stepwise mechanism is not possible and the concerted mechanism dominates the dynamics (Chem. Sci., 2015, 6, 5762). In this work, the potential energy surfaces of the 7AI dimer in the ground state (S0) and the lowest energy excited singlet state (S1) were constructed. After vertical excitation to the S1 state, the single proton transfer can occur. The second proton transfer process in the stepwise mechanism is blocked by a high potential barrier (36.4 kcal mol−1), which is consistent with the result proposed by Otero and coworkers. However, the single proton transfer process is compatible with the concerted mechanism and we show that the single proton transfer process rather than the concerted mechanism dominates the dynamics. The concerted process is unfavorable in the S1 state compared with the barrierless single proton transfer process. In addition, the proton transfer process in the S0 state is revealed. The single proton transfer tautomer in the S1 state returns to the S0 state and transfers the second proton via a barrierless process. Finally, the double proton transfer tautomer in the S0 state can recover to the normal dimer through the reverse proton transfer reaction.

Graphical abstract: A theoretical study of the potential energy surfaces for the double proton transfer reaction of model DNA base pairs

Article information

Article type
Paper
Submitted
11 Nov 2016
Accepted
17 Jan 2017
First published
17 Jan 2017

Phys. Chem. Chem. Phys., 2017,19, 4802-4808

A theoretical study of the potential energy surfaces for the double proton transfer reaction of model DNA base pairs

C. Li, Y. Yang, D. Li and Y. Liu, Phys. Chem. Chem. Phys., 2017, 19, 4802 DOI: 10.1039/C6CP07716A

To request permission to reproduce material from this article, please go to the Copyright Clearance Center request page.

If you are an author contributing to an RSC publication, you do not need to request permission provided correct acknowledgement is given.

If you are the author of this article, you do not need to request permission to reproduce figures and diagrams provided correct acknowledgement is given. If you want to reproduce the whole article in a third-party publication (excluding your thesis/dissertation for which permission is not required) please go to the Copyright Clearance Center request page.

Read more about how to correctly acknowledge RSC content.

Social activity

Spotlight

Advertisements