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Issue 18, 2005
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The electronic spectrum of protonated adenine: Theory and experiment

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Abstract

In this work we present the results of a combined experimental and theoretical study concerned with the question how a proton changes the electronic spectrum and dynamics of adenine. In the experimental part, isolated adenine ions have been formed by electro-spray ionisation, stored, mass-selected and cooled in a Paul trap and dissociated by resonant photoexcitation with ns UV laser pulses. The S0–S1 spectrum of protonated adenine recorded by fragment ion detection lies in a similar energy range as the first ππ* transition of neutral 9H-adenine. It shows a flat onset with a broad substructure, indicating a large S0–S1 geometry shift and an ultra-short lifetime. In the theoretical part, relative energies of the ground and the excited states of the most important tautomers have been calculated by means of a combined density functional theory and multi-reference configuration interaction approach. Protonation at the nitrogen in position 1 of the neutral 9H-adenine tautomer yields the most stable protonated adenine species, 1H-9H-A+. The 3H-7H-A+ and the 3H-9H-A+ tautomers, formed by protonation of 7H- and 9H-adenine in 3-position, are higher in energy by 162 cm−1 and 688 cm−1, respectively. Other tautomers lie at considerably higher energies. Calculated vertical absorption spectra are reported for all investigated tautomers whereas geometry optimisations of excited states have been carried out only for the most interesting ones. The S1 state energies and geometries are found to depend on the protonation site. The theoretical data match best with the experimental onset of the spectrum for the 1H-9H-A+ tautomer although we cannot definitely exclude contributions to the experimental spectrum from the 3H-7H-A+ tautomer at higher energies. The vertical S0 → S1 excitation energy is similar to the one in neutral 9H-adenine. As for the neutral adenine, we find a conical intersection of the S1 of protonated adenine with the ground state in an out-of-plane coordinate but at lower energies and accessible without barrier.

Graphical abstract: The electronic spectrum of protonated adenine: Theory and experiment

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Publication details

The article was received on 02 Jun 2005, accepted on 20 Jul 2005 and first published on 11 Aug 2005


Article type: Paper
DOI: 10.1039/B507422C
Phys. Chem. Chem. Phys., 2005,7, 3306-3316

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    The electronic spectrum of protonated adenine: Theory and experiment

    C. Marian, D. Nolting and R. Weinkauf, Phys. Chem. Chem. Phys., 2005, 7, 3306
    DOI: 10.1039/B507422C

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