Issue 48, 2025

Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

Abstract

In pursuit of an efficient solvation approach for the halogen bonded complex between molecular iodine and tetramethylthiourea that reliably reproduces experimental trends, we investigated a range of solvent models, from implicit representations to periodic metadynamics simulations alongside micro-solvation and ONIOM-based methods as robust alternatives. Implicit solvent models fail to describe halogen-bonded complexes in high-polar solvents but provide surprisingly accurate estimates of binding free energies in all low to moderately polar solvents. For accurate and reliable modeling, especially in polar media, explicit solvent representations are essential. Periodic metadynamics simulations typically provide enhanced accuracy in calculating free energy differences, particularly for systems with complex solvation behavior. However, they are computationally demanding and restricted to generalized gradient approximation functionals (GGA). To overcome this limitation and improve accuracy, we employed the machine learning perturbation theory technique, enabling the estimation of free energies at levels of theory beyond the GGA.

Graphical abstract: Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

Supplementary files

Article information

Article type
Edge Article
Submitted
19 Aug 2025
Accepted
24 Oct 2025
First published
27 Oct 2025
This article is Open Access

All publication charges for this article have been paid for by the Royal Society of Chemistry
Creative Commons BY-NC license

Chem. Sci., 2025,16, 23129-23138

Solvation strategies for free-energy calculations in a halogen-bonded complex: implicit, explicit, and machine learning approaches

J. Vacek, D. Vrška, D. Manna, R. Lo and P. Hobza, Chem. Sci., 2025, 16, 23129 DOI: 10.1039/D5SC06336A

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