Characterization of conformational states of the homodimeric enzyme fluoroacetate dehalogenase by 19F–13C two-dimensional NMR

Abstract

Tryptophan plays a critical role in proteins by contributing to stability, allostery, and catalysis. Using fluorine (¹⁹F) nuclear magnetic resonance (NMR), protein conformational dynamics and structure–activity relationships (SARs) can be studied via fluorotryptophan reporters. Tryptophan analogs such as 4-, 5-, 6-, or 7-fluorotryptophan can be routinely incorporated into proteins during heterologous expression by arresting endogenous tryptophan biosynthesis. Building upon the large ¹⁹F chemical shift dispersion associated with 5-fluorotryptophan, we introduce an approach to the incorporation of ¹³C-enriched 5-fluorotryptophan using a direct biosynthetic precursor, 5-fluoroanthranilic acid-(phenyl-¹³C₆). The homodimeric enzyme fluoroacetate dehalogenase (FAcD), a thermophilic alpha/beta hydrolase responsible for the hydrolysis of a C–F bond in fluoroacetate, was expressed and biosynthetically labeled with (phenyl-¹³C₆) 5-fluorotryptophan. The resulting two-dimensional ¹⁹F–¹³C (transverse relaxation optimized spectroscopy) TROSY heteronuclear correlation spectra provide complete resolution of all 9 tryptophan residues in the apo enzyme and FAcD saturated with the substrate analog bromoacetate. The (¹⁹F,¹³C) correlation spectra also reveal a multitude of minor resonances in the apo sample. The role of each tryptophan residue in allosteric communication was validated with computational rigidity transmission allostery analysis, which in this case explores the relative interprotomer communication between all possible tryptophan pairs.