Issue 6, 2023

High-level ab initio mapping of the multiple H-abstraction pathways of the OH + glycine reaction

Abstract

We perform a systematic search in the transition-state (TS) and product-channel complex (MIN) regions of the multi-channel OH + glycine → H2O + H2N–CH–COOH (CH)/HN–CH2–COOH (NH)/H2N–CH2–COO (COOH) reactions. Geometry optimizations reveal {7, 3, 3} CH-TS, {2, 2, 2} CH-MIN, {17, 10, 5} NH-TS, {35, 19, 19} NH-MIN, and {6, 5, 5} COOH-TS conformers at the {MP2/3-21G, MP2/aug-cc-pVDZ, CCSD(T)-F12b/aug-cc-pVDZ} levels of theory as well as 2 additional CH-TSs based on chemical intuition. The benchmark relative energies of the TS, MIN, and product conformers are obtained by considering basis set effects up to aug-cc-pVQZ using the explicitly-correlated CCSD(T)-F12b method, post-(T) correlation up to CCSDT(Q), core correlation, scalar relativistic effects, spin–orbit coupling, and zero-point energy corrections. All the CH [ΔEeH0) = −38.54(−38.61) kcal mol−1], NH [ΔEeH0) = −16.72(−17.98) kcal mol−1], and COOH [ΔEe = −4.98 kcal mol−1] reactions are exothermic and proceed via shallow, usually negative, classical(adiabatic) barriers of −0.37(−0.95), −1.91(−2.48), and 1.02(−0.57) kcal mol−1, respectively. In the entrance channel MRCI/aug-cc-pVTZ computations reveal several complexes with reactive(non-reactive) arrangements and binding energies of 1.0, 1.6, 3.3, (5.2 and 5.9) kcal mol−1, stabilized by CH⋯OH, NH⋯OH, COOH⋯OH, (OH⋯O[double bond, length as m-dash]C and OH⋯N) hydrogen bonds, respectively.

Graphical abstract: High-level ab initio mapping of the multiple H-abstraction pathways of the OH + glycine reaction

Supplementary files

Article information

Article type
Paper
Submitted
05 Jul 2022
Accepted
17 Jan 2023
First published
18 Jan 2023
This article is Open Access
Creative Commons BY-NC license

Phys. Chem. Chem. Phys., 2023,25, 5271-5281

High-level ab initio mapping of the multiple H-abstraction pathways of the OH + glycine reaction

B. Gruber and G. Czakó, Phys. Chem. Chem. Phys., 2023, 25, 5271 DOI: 10.1039/D2CP03049G

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