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Automated Calculation of Thermal Rate Coefficients using Ring Polymer Molecular Dynamics and Machine-Learning Interatomic Potentials with Active Learning

Abstract

We propose a methodology for fully automated calculation of thermal rate coefficients of gas phase chemical reactions, which is based on combining the ring polymer molecular dynamics (RPMD) with the machine-learning interatomic potentials actively learning on-the-fly. Based on the original computational procedure implemented in the RPMDrate code, our methodology gradually and automatically constructs the potential energy surfaces (PESs) from scratch with the data set points being selected and accumulated during the RPMDrate simulation. Such an approach ensures that our final machine-learning model provides reliable description of the PES which avoids artifacts during exploration of the phase space by RPMD trajectories. We tested our methodology on two representative thermally activated chemical reactions studied recently by RPMDrate at temperatures within the interval of 300--1000~K. The corresponding PESs were generated by fitting to only a few thousands automatically generated structures (less than 5000) while the RPMD rate coefficients retained the deviation from the reference values within the typical convergence error of RPMDrate. In future, we plan to apply our methodology to chemical reactions which proceed via complex-formation thus providing a completely general tool for calculating RPMD thermal rate coefficients for any polyatomic gas phase chemical reaction.

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Publication details

The article was received on 26 Sep 2018, accepted on 08 Nov 2018 and first published on 09 Nov 2018


Article type: Paper
DOI: 10.1039/C8CP06037A
Citation: Phys. Chem. Chem. Phys., 2018, Accepted Manuscript
  • Open access: Creative Commons BY-NC license
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    Automated Calculation of Thermal Rate Coefficients using Ring Polymer Molecular Dynamics and Machine-Learning Interatomic Potentials with Active Learning

    I. S. Novikov, Y. Suleimanov and A. V. Shapeev, Phys. Chem. Chem. Phys., 2018, Accepted Manuscript , DOI: 10.1039/C8CP06037A

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