A conformationally flexible bis-pyridyl-bis-amide ligand, namely N,N′-bis-(3-pyridyl)isophthalamide (L1), has been exploited to synthesize metalla-macro-tricyclic cryptands by reacting it with various Cu(II) salts having different counteranions. Out of the five coordination compounds, namely [{Cu(μ-L1)2(H2O)2}·SO4·2H2O·X] (1a), [{Cu(μ-L1)(H2O)4}·SO4·3H2O]∝ (1b), [{Cu(μ-L1)2(H2O)2}·SiF6·CH3OH·4H2O]∝ (2), [{Cu(μ-L1)2(μ-Cl)}·ClO4]∝ (3) and [{Cu(μ-L1)2(H2O)}·(NO3)2·2H2O·X]∝ (4a) (X = disordered solvents), compounds such as 1a, 2 and 3 are metallacryptands, of which 3 is the first example of a polymeric metalla-macro-tricyclic cryptand. The effect of the conformation-dependent ligating topology and hydrogen bonding backbone of ligand L1, and counteranions on the formation of metallacryptands is discussed. Interestingly, an important anion, namely SO42−, has been separated by concomitantly crystallizing 1a and 1b from a complex mixture of anions, such as SO42−, NO3− and ClO4−, by following an in situ crystallization technique. Magnetic interactions in 3 have been investigated as a typical example. Weak antiferromagnetic coupling is observed in 3, as expected given the topology of the networks.