Wanqing
Li
a,
Xue
Chen
a,
Xipeng
Dong
a,
Zizhuo
Zhai
a,
Yu
Kang
b and
Pudun
Zhang
*ab
aCollege of Chemistry, Beijing University of Chemical Technology, No. 15 Beisanhuan East Road, Chaoyang, Beijing 100029, China. E-mail: zhangpd@mail.buct.edu.cn; Fax: +86 010 64417634; Tel: +86 010 64417634
bAnalysis and Test Center, Beijing University of Chemical Technology, Beijing 100029, China
First published on 4th June 2025
Labeling of proteins with carbon quantum dots (CQDs) has always been limited by their complex and cumbersome modifications, which leads to the poor reproducibility of results. In this paper, a one-step solvothermal synthesis approach was developed to prepare nitrogen and sulfur-codoped CQDs using citric acid and thiourea as precursors. Three components emitting blue, yellow and red fluorescence were isolated, and the isothiocyanate functional group was demonstrated to be attached to red emissive CQDs (R-CQDs) by Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy. Bovine serum albumin (BSA) was successfully labeled with R-CQDs at a mass ratio of 1
:
1 via a reaction of the isothiocyanate functional group and the lysine residue of BSA. The labeling of R-CQDs with BSA follows a pseudo-second order kinetic model with a rate constant of 0.0796 h−1 and a maximum labeling efficiency of 31.22%. A Förster resonance energy transfer effect was found between BSA and R-CQDs during labeling. The apparent dissociation constant of the R-CQD-labeled BSA and the Hill coefficient are 1.35 × 10−2 mg mL−1 and 1.05, respectively, while the binding constant and the number of binding sites are 3.98 × 102 and 1.35, respectively. This labeling method can also be used for quantification of proteins with a detection limit of 7.0 μg mL−1 and is promising to be applied in the integration of optical diagnosis and photothermal therapy due to the outstanding photothermal conversion efficiency (60.6%) of R-CQDs.
Since lysine residues are abundant in many proteins, ITC-modified fluorescein and rhodamine are among the most used fluorescent labeling reagents. Although such small molecule probes have the advantages of high fluorescence brightness, good specificity and easy operation, they are poor in water solubility and easy to photobleach, and most of them are toxic. Quantum dots (QDs) are a kind of inorganic semiconductor nanomaterial with tunable fluorescence, high quantum yield and excellent photostability. However, they are still poor in water solubility and are toxic due to the use of heavy metal cadmium.5 Carbon quantum dots (CQDs) are a new type of carbon-based nanomaterial and have received significant attention owing to the wide availability of raw materials, ease of synthesis, outstanding optical properties and good biocompatibility.6 Currently, CQDs have been utilized in various fields including detection,7–10 anti-counterfeiting,11 sensing,12–15 catalysis,16 fluorescence imaging,17,18 photothermal therapy,19,20 and photoelectric devices.21,22 In particular, CQDs are well suited for biomedical applications due to their small particle size, rich surface functional groups, excellent photostability, and low cytotoxicity.23–26
When being used for the analysis of proteins, CQDs have to be linked via a covalent binding or non-covalent adsorption strategy while the fluorescence cannot be quenched. The non-covalent adsorption strategy is governed by hydrogen bonding, electrostatic attraction or hydrophobic interaction.27 This strategy is simple and easy to operate, but such linkage is not secure because desorption might also occur over time, which leads to poor labeling efficiency and reproducibility.28,29 On the other hand, the covalent binding strategy is similar to that of small fluorescent molecule labeling, which requires functional groups with strong electrophilic active centers on the surface of CQDs to react with proteins. Unfortunately, most of the water soluble CQDs have amino, hydroxyl and carboxyl groups on the surface, which are nucleophilic but have no electrophilic center. Therefore, they cannot react nucleophilically with amino acid residues on proteins. In order to achieve covalent attachment to protein molecules, researchers tried to functionalize the surface of CQDs with electrophilic active centers, among which NHS28,30–32 and ITC33,34 are the two most often used compounds because their unparalleled labeling capabilities have been demonstrated by small molecule fluorescent probes. Despite achieving functionalized CQDs with the desired electrophilic groups, the entire procedure is multistep and cumbersome, and the modification yield varies depending on experimental conditions and CQD types, resulting in poor reproducibility of labeling.
Citric acid (CA) and thiourea (TU) are the common carbon, nitrogen (N) and sulfur (S) sources for the synthesis of N,S-codoped CQDs (N,S-CQDs) due to their wide availability and low cost. CA forms the core of CQDs through dehydration, cyclization, aromatization and carbonization at high temperature, while TU tends to form thiocyanate/isothiocyanate (–S–C
N/–N
C
S) functional groups by deamination. The ammonia produced by decomposition can enter the interior and surface of the core of CQDs to form N-doped CQDs, which are further conjugated with –S–C
N/–N
C
S groups to generate N,S-CQDs. Based on this knowledge, we prepared N,S-CQDs by a one-step solvothermal method and separated blue, yellow, and red emissive CQDs (B-CQDs, Y-CQDs and R-CQDs) by silica column chromatography, respectively. We found that the surfaces of both B-CQDs and Y-CQDs were functionalized with the –S–C
N group, while that of R-CQDs was functionalized with the –N
C
S group. Furthermore, the as-prepared R-CQDs were successfully labeled onto BSA without any modification, demonstrating that it is an effective fluorescent probe for protein labeling. Since the obtained R-CQDs also have an excellent photothermal effect, such labeling is promising to be applied in biomedical fields, including the integration of diagnosis and photothermal therapy of major diseases.
000) and the volume was fixed to 1.0 mL. The optimal R-CQDs concentration for labeling and the maximum amount of BSA that can be labeled were achieved by changing their respective concentrations.
It is shown from Fig. 1a–c that two absorption peaks at 260 nm and 350 nm appear in the UV spectra of the three CQDs, which are attributed to the π–π* transition of aromatic sp2 C
C and the n–π* transition of C
O and/or C
N, respectively. In addition to these two common peaks, Y-CQDs also display an absorption peak at 440 nm, while R-CQDs exhibit two absorption peaks at 515 nm and 545 nm. The appearance of long-wavelength absorption peaks is due to the formation of a larger aromatic conjugated structure and the doping of heteroatoms that can form the chromophores (e.g., C
O, C
N, C
S, etc.) or auxochromes (e.g., OH, NH2, SR, etc.) on surface of CQDs.37,38 Besides, it is also shown that both the fluorescence excitation and emission wavelengths are red-shifted from 370/445 nm (λex/λem) (B-CQDs) to 445/545 nm (Y-CQDs) and further to 550/605 nm (R-CQDs). Such a color change of the three N,S-CQDs solutions can also be visually observed under daylight and an ordinary flashlight with near-UV (365 nm), blue and green light, respectively, as shown in the insets of Fig. 1a–c. The high overlap of absorption and excitation peaks indicates the existence of surface state luminescence.39 In addition, the average lifetimes of 6.92 ns, 6.20 ns and 4.85 ns for the aqueous B-CQD, Y-CQD and R-CQD solutions are obtained from their respective fluorescence decay curves (Fig. 1d–f), in which the contributions of τ2 are much larger than that of τ1. Since τ1 and τ2 are caused by the non-radiation transition of the intrinsic state and the surface defects,40 respectively, the results also suggest a surface state luminescence mechanism. At their optimal excitation wavelengths, the absolute fluorescence QYs of B-CQDs, Y-CQDs, and R-CQDs are 12.3%, 8.5%, and 7.4%, respectively. Furthermore, the fluorescence stability of the three CQDs was evaluated in terms of their salt and pH tolerance as well as preservation and continuously long-time irradiation. The results (Fig. S4†) indicate that the three CQDs exhibit outstanding photostability, anti-bleaching and robust environmental resilience, which paves the way for their potential applications in a number of fields.
Nevertheless, considering the fact that R-CQDs have relatively low fluorescence QYs and the absorption curve shows an obvious increase in the range of 600–850 nm (Fig. S5†) with an extinction coefficient of 1.29 L g−1 cm−1 at 808 nm, it is rationally presumed that most of the absorbed energy in long wavelengths might be converted into thermal energy through non-radiative relaxation. Therefore, the photothermal effect of R-CQDs was also investigated using an approach similar to those presented in the literature.41,42 As shown in Fig. S6,† a rather high photothermal conversion efficiency (PCE) of 60.6 ± 0.7% (n = 3) was achieved for R-CQDs, validating the presumption. The excellent photothermal effect provides an opportunity for R-CQDs in biomedical applications. For instance, it is promising to be used in photothermal diagnosis and therapy of tumor via selectively labeling R-CQDs with proteins.
The TEM images (Fig. 1g–i) demonstrate that the three individual N,S-CQDs are quasi-spherical particles with average diameters of 2.84 nm (B-CQDs), 3.60 nm (Y-CQDs) and 5.13 nm (R-CQDs), respectively. The gradual increase of the particle size from B-CQDs to Y-CQDs and further to R-CQDs indicates that the quantum confinement effect also contributes to the luminescence of the as-prepared N,S-CQDs in addition to the surface state. Besides, a broad peak at 27.2° is observed in the XRD patterns of the three CQDs (Fig. S7†), which is attributed to the diffraction of the (002) plane of the graphitic structures of CQDs.38 Due to the dispersion of the smaller particle size, B-CQDs display a broader and weaker diffraction peak than Y- and R-CQDs.
The FTIR spectra (Fig. 2) suggest similar chemical structures of the three CQDs. In particular, there exist hydroxyl (3420 cm−1), amino (3210 cm−1), alkyl (2976 and 2850 cm−1), thiocyanoate/isothiocyanate (2062/2074 cm−1), imide (1770 and 1705 cm−1), and aryl (1618 and 775–730 cm−1) groups on the three CQDs. Nevertheless, some differences in the chemical structures are still found amongst them. (1) The strong absorption band at 2062 cm−1 of B-CQDs and Y-CQDs is mainly caused by the –S–C
N group, while the relatively weak band at 2074 cm−1 of R-CQDs is attributed to the –N
C
S group. However, the elemental analysis result (Table S1†) shows that the amounts of sulfur (S) gradually increase from B-CQDs to Y-CQDs and further to R-CQDs, indicating that considerable amounts of S are converted into other S-containing functional groups as carbonization proceeds. (2) The band intensities of the imide group (1770 and 1705 cm−1) also decrease from B-CQDs to Y-CQDs and further to R-CQDs, though it is not very obvious. The imide group can be cleaved into an amide group (1662 cm−1 in the FTIR spectrum of Y-CQDs) and further carbonized into pyrrolic or pyridinic structures (1620 cm−1 in the FTIR spectrum of R-CQDs). Such a result is also illustrated by the increase of the C–N bending vibration band (δC–N) intensity at 1352 cm−1.
The XPS survey scans (Fig. 3a) display the presence of C (285 eV), N (400 eV), O (532 eV), and S (164 eV) elements on the three CQDs. The high-resolution C 1s spectra (Fig. 3b) show three Gaussian peaks at 284.4 eV, 285.6 eV and 288.0 eV, corresponding to the C–C/C
C (sp2 C), C–O/C–N (sp3 C) and C
O/C
N groups, respectively. It is noticed that the contents of the C
O/C
N bonds of Y-CQDs and R-CQDs are larger than that of B-CQDs, indicating that more heteroatom-doped carbon cores were formed. Similarly, three N species, including pyridinic N (398.8 eV), pyrrolic N/amino N (399.6 eV) and graphitic N (401.2 eV) are identified from the high-resolution N 1s spectra (Fig. 3c) and the content of graphitic N gradually increases from B-CQDs to Y-CQDs and further to R-CQDs. The increase in the content of graphitic N narrows the HOMO–LUMO gap and therefore favors the redshift of emission.43,44 Likewise, the high-resolution O 1s spectra (Fig. 3d) signify the presence of C
O (531.2 eV) and C–O (533 eV) groups, respectively, and the increase of the C
O group also leads to a redshift of emission.43 In addition, three peaks located at 162.8–163.3 eV, 164.2–165.4 eV and168.2–169.4 eV are observed in the high-resolution S 2p spectra (Fig. 3e). The former two peaks correspond to the S 2p3/2 and S 2p1/2 states of the C–S bond, respectively, which might be caused by the thiophene or thiazole structure, while the latter corresponds to the –N
C
S group, which was demonstrated by FTIR. The identification of the –N
C
S and –S–C
N groups can be confirmed by using fluorescein isothiocyanate (FITC) and KSCN, as shown in Fig. S8.† The possible formation mechanism of the thiocyanate or isothiocyanate group on the N,S-CQDs are given as Note S10 in the ESI.†
![]() | ||
| Fig. 3 (a) XPS survey scans of B-CQDs (left column), Y-CQDs (middle column) and R-CQDs (right column). (b–e) High-resolution C 1s, N 1s, O 1s and S 2p XPS spectra of B-CQDs, Y-CQDs and R-CQDs. | ||
C
S functional groups on the surface of R-CQDs based on FTIR and XPS results, which suggest that R-CQDs can be directly used for protein labeling without any additional modification according to a nucleophilic reaction mechanism (Note S11 in the ESI†). For this reason, BSA and R-CQDs were treated according to the procedure given in section 2.4. The UV spectrum of the resulting product contains the spectral features of both BSA and R-CQDs (Fig. 4a), confirming that R-CQDs had been successfully labeled onto BSA.
![]() | ||
| Fig. 4 (a) UV-vis absorption spectra of R-CQDs, BSA and R-CQDs@BSA. (b) Fluorescence spectra of BSAs after adding increasing concentrations of R-CQDs under excitation at 280 nm. (c) Fluorescence spectra of R-CQDs after adding increasing concentrations of BSAs under excitation at 550 nm. (d) Fluorescence decay curves of BSA and R-CQDs@ BSA. (e) Plot of the ratio of the fluorescence intensity (F*) of BSA at 340 nm to the one of initial BSA versus the concentration of added R-CQDs according to the Hill equation (Note S13 in the ESI†). (f) FTIR spectra of R-CQDs, BSA and R-CQDs@BSA. | ||
It is well known that BSA has an intrinsic fluorescence at 340 nm, which is susceptible to the molecules around BSA. Therefore, the interaction between BSA and R-CQDs has to be investigated before establishing the labeling method. By fixing the concentration of one and increasing the concentration of the other, a series of fluorescence emission spectra are obtained under excitation at 280 nm and 550 nm, respectively, and the influence of each on the fluorescence intensity of the other can therefore be studied. As depicted in Fig. 4b, when varied concentrations of R-CQDs were added in BSA solutions (maintaining the concentration of BSA at 0.1 mg mL−1), the intrinsic fluorescence intensity of BSA at 340 nm shows a significant decreasing trend. On the other hand, when varied concentrations of BSA were added to R-CQD solutions (maintaining the concentration of R-CQDs at 0.1 mg mL−1), the fluorescence intensity of R-CQDs displays an increasing trend with a slight redshift of the emission center (Fig. 4c). It is noticed that the addition of R-CQDs resulted in a decrease in the intrinsic fluorescence of BSA until it was completely quenched, but in turn, the fluorescence of R-CQDs was enhanced due to adding BSA. These interesting phenomena indicate that Förster resonance energy transfer (FRET) might occur between BSA and R-CQDs during labeling, which can be substantiated by the significant spectral overlap (Fig. S9†) between the emission spectrum of BSA (donor) and the absorption spectrum of R-CQDs (acceptor).45 In addition, the decrease of the average fluorescence lifetime of BSA from 5.55 ns to 4.56 ns before and after labeling of R-CQDs (Fig. 4d) also confirms the FRET effect. Furthermore, the dependence of the fluorescent signal of BSA on the R-CQD concentration was investigated using the Hill model (see Note S13 in the ESI† for details),45–49 and the ratio of the fluorescence intensity (F*) of BSA at 340 nm to that of initial BSA versus the concentration of added R-CQDs is shown in Fig. 4e. The apparent dissociation constant
and the Hill coefficient (h) are 1.35 × 10−2 mg mL−1 and 1.05, respectively, indicating a weak positive cooperativity of interaction between R-CQDs and BSA. The reaction between BSA and the –N
C
S group of R-CQDs can also be validated by FTIR. As shown in Fig. 4f, the absorption band of the –N
C
S group (2074 cm−1) disappears after labeling and instead a C
S characteristic band appears at 1360 cm−1. Note that the bands less than 1250 cm−1 in the spectrum of R-CQDs@BSA are caused by the phosphate used for elution. The FTIR results demonstrate that the interaction between BSA and R-CQDs is not a simple adsorption but forming a new chemical group (substituted thiocarbamide). Apart from these, a binding equilibrium constant of BSA with R-CQDs (K = 3.98 × 102) and the number of binding sites (1.35) can also be determined by quenching the fluorescence of BSA,49 which is discussed in detail in Note S14 and Fig. S10 (ESI†). This result is in good agreement with that calculated from the Hill model for the dissociation coefficient (KD). The developed R-CQDs in this work not only exhibit similar specificity and stability to the conventional multi-step functionalized CQDs, but also possess higher labeling efficiency and reproducibility. Moreover, the specificity of labeling can be significantly enhanced by linking R-CQDs to a special antibody, and then utilizing the specific interaction between the antibody and the antigen.
![]() | (1) |
Consequently, the true absorbance of labeled BSA
can be calculated by
![]() | (2) |
![]() | (3) |
represents the absorbance of BSA at its initial concentration.
In order to achieve an optimal labeling, the reaction time, the concentration of R-CQDs, and the maximum concentration of labeled BSA were investigated. It is shown in Fig. 5a that labeling was already finished within two hours. Fig. S12† also displays that the fluorescence intensity of the labeled BSA reaches the maximum after two hours, further evidencing the results of UV absorption. The inset of Fig. 5a shows an excellent linearity between t/LEt and t (R2 = 0.9907), suggesting that the labeling of BSA with R-CQDs follows the pseudo-second-order kinetic model
![]() | (4) |
:
1 when labeling reached the maximum. It is noticed that a good linearity is found when the BSA concentration is less than 4.0 mg mL−1, suggesting that R-CQDs can be applied for quantification of proteins. To validate this, 1.0 mg mL−1 of R-CQDs was used to label a series of BSA solutions with varied concentrations, and then the fluorescence spectrum of each R-CQDs@BSA was recorded (Fig. 6a). An excellent linearity between the fluorescence intensity and the BSA concentration is achieved (Fig. 6b) with a limit of detection (LOD) of 7.0 μg mL−1. Similarly, human serum albumin (HSA) was also successfully labeled with R-CQDs using this developed approach, and a good linearity can also be obtained (Fig. S13a–c†).
![]() | ||
| Fig. 6 (a) Fluorescence spectra of BSA with varied concentrations (0.05–4.0 mg mL−1) labeled with 1.0 mg mL−1 of R-CQDs. (b) Relationship between the fluorescence intensity and the BSA concentration. | ||
In addition, in order to investigate the influence of light on LE, labeling was implemented under the same conditions (2 h, 1.0 mg mL−1) under daylight, dark and UV irradiation at 365 nm, respectively. The results (Fig. S14†) show that both the LE and fluorescence intensity of R-CQDs@BSA remain virtually unchanged, indicating that light has no influence on labeling.
C
S group) was attached to the surface of R-CQDs, while the thiocyanate functional groups (–S–C
N) were attached to the surfaces of both B-CQDs and Y-CQDs. To the best of our knowledge, this work is the first reported one in which the reactive functional groups were linked to CQDs without additional complex reactions. Based on this feature, R-CQDs were successfully applied to label BSA by reacting the –N
C
S group of R-CQDs with the primary NH2 group of the lysine residue of BSA. Such labeling led to an increase in the fluorescence intensity of R-CQDs and a decrease in that of BSA due to a FRET between BSA and R-CQDs. The apparent dissociation constant
and the Hill coefficient are 1.35 × 10−2 mg mL−1 and 1.05, respectively, while the binding constant (K) and the number of binding sites are 3.98 × 102 and 1.35, respectively. In addition, the labeling of R-CQDs with BSA follows a pseudo-second order kinetic model with a rate constant (k) of 0.0796 h−1 and a maximum labeling efficiency of 31.22%. By adopting this labeling method, the R-CQDs can also be applied for quantification of proteins and an excellent linearity between the fluorescence intensity and the BSA concentration is achieved with an LOD of 7.0 μg mL−1. Since the R-CQDs also displayed a significant photothermal effect with a PCE of up to 60.6% under 808 nm irradiation, the developed labeling technique has the potential to realize an integration of optical diagnosis and photothermal therapy. Compared with the existing CQD labeling methods, our work demonstrates a significant importance in the biochemical field, and it is promising that the as-prepared R-CQDs can be translated into clinical application. However, before it is put into practical use, two potential challenges have to be addressed. First, the lack of long-term cytotoxicity data severely hinders its clinical translation. All the reported cytotoxicity results at present are short-term and cannot provide enough support. Second, the CQDs’ in vivo accumulation and the resulting impact on healthy tissues and cells remain unknown.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5nr01242b |
| This journal is © The Royal Society of Chemistry 2025 |