Capillary flow and mechanical buckling in a growing annular bacterial colony

Tieyan Si, Zidong Ma and Jay X. Tang

Soft Matter, 2018, 14, 301
DOI: 10.1039/C7SM01452J

Dynamic and mechanical evolution of an oil–water interface during bacterial biofilm formation

David P. Rivas, Nathan D. Hedgecock, Kathleen J. Stebe and Robert L. Leheny

Soft Matter, 2021, 17, 8195
DOI: 10.1039/D1SM00795E

Topographical alterations render bacterial biofilms susceptible to chemical and mechanical stress

Carolina Falcón García, Felix Stangl, Alexandra Götz, Weining Zhao, Stephan A. Sieber, Madeleine Opitz and Oliver Lieleg

Biomater. Sci., 2019, 7, 220
DOI: 10.1039/C8BM00987B

Interplay of physical mechanisms and biofilm processes: review of microfluidic methods

A. Karimi, D. Karig, A. Kumar and A. M. Ardekani

Lab Chip, 2015, 15, 23
DOI: 10.1039/C4LC01095G

Through thick and thin: a microfluidic approach for continuous measurements of biofilm viscosity and the effect of ionic strength

F. Paquet-Mercier, M. Parvinzadeh Gashti, J. Bellavance, S. M. Taghavi and J. Greener

Lab Chip, 2016, 16, 4710
DOI: 10.1039/C6LC01101B

Modulation of the mechanical properties of bacterial biofilms in response to environmental challenges

Marwa Tallawi, Madeleine Opitz and Oliver Lieleg

Biomater. Sci., 2017, 5, 887
DOI: 10.1039/C6BM00832A

Strength of bacterial adhesion on nanostructured surfaces quantified by substrate morphometry

Christian Spengler, Friederike Nolle, Johannes Mischo, Thomas Faidt, Samuel Grandthyll, Nicolas Thewes, Marcus Koch, Frank Müller, Markus Bischoff, Michael Andreas Klatt and Karin Jacobs

Nanoscale, 2019, 11, 19713
DOI: 10.1039/C9NR04375F

Selected metal ions protect Bacillus subtilis biofilms from erosion

S. Grumbein, M. Opitz and O. Lieleg

Metallomics, 2014, 6, 1441
DOI: 10.1039/C4MT00049H

Effect of collagen and EPS components on the viscoelasticity of Pseudomonas aeruginosa biofilms

Minhaz Ur Rahman, Derek F. Fleming, Indranil Sinha, Kendra P. Rumbaugh, Vernita D. Gordon and Gordon F. Christopher

Soft Matter, 2021, 17, 6225
DOI: 10.1039/D1SM00463H

Importance of the biofilm matrix for the erosion stability of Bacillus subtilis NCIB 3610 biofilms

M. Klotz, M. Kretschmer, A. Goetz, S. Ezendam, O. Lieleg and M. Opitz

RSC Adv., 2019, 9, 11521
DOI: 10.1039/C9RA01955C

Biofilm mechanics in an extremely acidic environment: microbiological significance

Virginia Souza-Egipsy, Juan F. Vega, Elena González-Toril and Ángeles Aguilera

Soft Matter, 2021, 17, 3672
DOI: 10.1039/D0SM01975E

Chelate chemistry governs ion-specific stiffening ofBacillus subtilisB-1 andAzotobacter vinelandiibiofilms

Martin Kretschmer and Oliver Lieleg

Biomater. Sci., 2020, 8, 1923
DOI: 10.1039/C9BM01763A

Spatial distribution of mechanical properties in Pseudomonas aeruginosa biofilms, and their potential impacts on biofilm deformation

Juan P. Pavissich, Mengfei Li and Robert Nerenberg

Biotech & Bioengineering, 2021, 118, 1545
DOI: 10.1002/bit.27671

Alginate exopolymer significantly modulates the viscoelastic properties and resilience of bacterial biofilms

Binu Kundukad, Scott A. Rice, Patrick S. Doyle and Staffan Kjelleberg

npj Biofilms Microbiomes, 2025, 11
DOI: 10.1038/s41522-025-00718-6

Mechanobiology as a tool for addressing the genotype-to-phenotype problem in microbiology

Merrill E. Asp, Minh-Tri Ho Thanh, Subarna Dutta, Jessica A. Comstock, Roy D. Welch and Alison E. Patteson

Biophysics Reviews, 2023, 4
DOI: 10.1063/5.0142121

Programmable and printable Bacillus subtilis biofilms as engineered living materials

Jiaofang Huang, Suying Liu, Chen Zhang, Xinyu Wang, Jiahua Pu, Fang Ba, Shuai Xue, Haifeng Ye, Tianxin Zhao, Ke Li, Yanyi Wang, Jicong Zhang, Lihua Wang, Chunhai Fan, Timothy K. Lu and Chao Zhong

Nat Chem Biol, 2019, 15, 34
DOI: 10.1038/s41589-018-0169-2

Hydrodynamic deformation and removal of Staphylococcus epidermidis biofilms treated with urea, chlorhexidine, iron chloride, or DispersinB

Eric R. Brindle, David A. Miller and Philip S. Stewart

Biotech & Bioengineering, 2011, 108, 2968
DOI: 10.1002/bit.23245

In Vitro Studies on a Microfluidic Sensor with Embedded Obstacles Using New Antibacterial Synthetic Compounds (1-TDPPO) Mixed Prop-2-en-1-one with Difluoro Phenyl

Changhyun Roh, Jaewoong Lee, Mayank Kinger and Chankyu Kang

Sensors, 2017, 17, 803
DOI: 10.3390/s17040803

Effects of biofilm heterogeneity on the apparent mechanical properties obtained by shear rheometry

Mengfei Li, Yanina Nahum, Karel Matouš, Paul Stoodley and Robert Nerenberg

Biotech & Bioengineering, 2023, 120, 553
DOI: 10.1002/bit.28276

Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness

Guanghong Zeng, Brian S. Vad, Morten S. Dueholm, Gunna Christiansen, Martin Nilsson, Tim Tolker-Nielsen, Per H. Nielsen, Rikke L. Meyer and Daniel E. Otzen

Front. Microbiol., 2015, 6
DOI: 10.3389/fmicb.2015.01099

Pseudomonasbiofilms: possibilities of their control

Jan Masák, Alena Čejková, Olga Schreiberová and Tomáš Řezanka

FEMS Microbiol Ecol, 2014, 89, 1
DOI: 10.1111/1574-6941.12344

Spectrum of pathogens in acute cholangitis in patients with and without biliary endoprosthesis

Andreas Weber, Jochen Schneider, Stefan Wagenpfeil, Philipp Winkle, Julia Riedel, Nina Wantia, Susanne Feihl, Franziska Römmler, Dorothee M. Baur, Roland M. Schmid, Hana Algül and Wolfgang Huber

Journal of Infection, 2013, 67, 111
DOI: 10.1016/j.jinf.2013.04.008

A review of bacterial biofilm formation and growth: rheological characterization, techniques, and applications

Eunseo Jeon, Haneum Kim, Garim Kim and Doojin Lee

Korea-Aust. Rheol. J., 2023, 35, 267
DOI: 10.1007/s13367-023-00078-7

Bioinspired approaches to encapsulate and deliver bacterial live biotherapeutic products

Noah Y. Brittain and Joel A. Finbloom

Advanced Drug Delivery Reviews, 2025, 225, 115663
DOI: 10.1016/j.addr.2025.115663

Bacterial Materials: Applications of Natural and Modified Biofilms

Elif N. Hayta, Marvin J. Ertelt, Martin Kretschmer and Oliver Lieleg

Adv Materials Inter, 2021, 8
DOI: 10.1002/admi.202101024

Evolutionary adaptations of biofilms infecting cystic fibrosis lungs promote mechanical toughness by adjusting polysaccharide production

Kristin Kovach, Megan Davis-Fields, Yasuhiko Irie, Kanishk Jain, Shashvat Doorwar, Katherine Vuong, Numa Dhamani, Kishore Mohanty, Ahmed Touhami and Vernita D Gordon

npj Biofilms Microbiomes, 2017, 3
DOI: 10.1038/s41522-016-0007-9

Material properties of biofilms—a review of methods for understanding permeability and mechanics

Nicole Billings, Alona Birjiniuk, Tahoura S Samad, Patrick S Doyle and Katharina Ribbeck

Rep. Prog. Phys., 2015, 78, 036601
DOI: 10.1088/0034-4885/78/3/036601

Drinking water biofilm cohesiveness changes under chlorination or hydrodynamic stress

L. Mathieu, I. Bertrand, Y. Abe, E. Angel, J.C. Block, S. Skali-Lami and G. Francius

Water Research, 2014, 55, 175
DOI: 10.1016/j.watres.2014.01.054

Influence of Metal Cations on the Viscoelastic Properties of Escherichia coli Biofilms

Adrien Sarlet, Valentin Ruffine, Kerstin G. Blank and Cécile M. Bidan

ACS Omega, 2023, 8, 4667
DOI: 10.1021/acsomega.2c06438

In SilicoModeling of the Rheological Properties of Covalently Cross-Linked Collagen Triple Helices

David A. Head, Giuseppe Tronci, Stephen J. Russell and David J. Wood

ACS Biomater. Sci. Eng., 2016, 2, 1224
DOI: 10.1021/acsbiomaterials.6b00115

Biogels in Soils: Plant Mucilage as a Biofilm Matrix That Shapes the Rhizosphere Microbial Habitat

Meisam Nazari, Samuel Bickel, Pascal Benard, Kyle Mason-Jones, Andrea Carminati and Michaela A. Dippold

Front. Plant Sci., 2022, 12
DOI: 10.3389/fpls.2021.798992

Kinneyia: A Flow-Induced Anisotropic Fossil Pattern from Ancient Microbial Mats

Stephan Herminghaus, Katherine Ruth Thomas, Saeedeh Aliaskarisohi, Hubertus Porada and Lucas Goehring

Front. Mater., 2016, 3
DOI: 10.3389/fmats.2016.00030

Critical shear stresses of Pseudomonas aeruginosa biofilms from dental unit waterlines studied using microfluidics and additional magnesium ions

Jesse Greener, William Y. Harvey, Cynthia Gagné-Thivierge, Sepideh Fakhari, Seyed Mohammad Taghavi, Jean Barbeau and Steve J. Charette

Physics of Fluids, 2022, 34
DOI: 10.1063/5.0076737

Biofilms and mechanics: a review of experimental techniques and findings

Vernita D Gordon, Megan Davis-Fields, Kristin Kovach and Christopher A Rodesney

J. Phys. D: Appl. Phys., 2017, 50, 223002
DOI: 10.1088/1361-6463/aa6b83

Testing of aerosolized ciprofloxacin nanocarriers on cystic fibrosis airway cells infected with P. aeruginosa biofilms

Jenny Juntke, Xabier Murgia, Nazende Günday Türeli, Akif Emre Türeli, Chelsea R. Thorn, Marc Schneider, Nicole Schneider-Daum, Cristiane de Souza Carvalho-Wodarz and Claus-Michael Lehr

Drug Deliv. and Transl. Res., 2021, 11, 1752
DOI: 10.1007/s13346-021-01002-8

Pseudomonas putida RSS biopassivation of mild steel for long term corrosion inhibition

M.S. Suma, Rubina Basheer, B.R. Sreelekshmy, V. Vipinlal, M. Ameen Sha, P. Jineesh, Athira Krishnan, S.R. Archana, Viswanathan S. Saji and S.M.A. Shibli

International Biodeterioration & Biodegradation, 2019, 137, 59
DOI: 10.1016/j.ibiod.2018.11.008

Nonlinear rheological characteristics of single species bacterial biofilms

Saikat Jana, Samuel G. V. Charlton, Lucy E. Eland, J. Grant Burgess, Anil Wipat, Thomas P. Curtis and Jinju Chen

npj Biofilms Microbiomes, 2020, 6
DOI: 10.1038/s41522-020-0126-1

Microbial Colonization of Pancreatic Duct Stents

Jochen Schneider, Philipp Schenk, Andreas Obermeier, Julia Fremd, Susanne Feihl, Stefanie Forkl, Nina Wantia, Franziska Römmler, Bruno Neu, Monther Bajbouj, Stefan von Delius, Roland M. Schmid, Hana Algül and Andreas Weber

Pancreas, 2015, 44, 786
DOI: 10.1097/MPA.0000000000000332

Role of Environmental and Antibiotic Stress on Staphylococcus epidermidis Biofilm Microstructure

Elizabeth J. Stewart, Ashley E. Satorius, John G. Younger and Michael J. Solomon

Langmuir, 2013, 29, 7017
DOI: 10.1021/la401322k

Nanoindentation ofPseudomonas aeruginosabacterial biofilm using atomic force microscopy

Mahmoud Baniasadi, Zhe Xu, Leah Gandee, Yingjie Du, Hongbing Lu, Philippe Zimmern and Majid Minary-Jolandan

Mater. Res. Express, 2014, 1, 045411
DOI: 10.1088/2053-1591/1/4/045411

The prevention and removal of biofilm formation ofStaphylococcus aureusstrains isolated from raw milk samples by citric acid treatments

Meltem Yesilcimen Akbas and Tugba Kokumer

Int J of Food Sci Tech, 2015, 50, 1666
DOI: 10.1111/ijfs.12823

From molecules to multispecies ecosystems: the roles of structure in bacterial biofilms

Vernita Gordon, Layla Bakhtiari and Kristin Kovach

Phys. Biol., 2019, 16, 041001
DOI: 10.1088/1478-3975/ab1384

Bacterial biofilm mechanical properties persist upon antibiotic treatment and survive cell death

K Zrelli, O Galy, P Latour-Lambert, L Kirwan, J M Ghigo, C Beloin and N Henry

New J. Phys., 2013, 15, 125026
DOI: 10.1088/1367-2630/15/12/125026

A study of the rheological properties of visco-elastic materials using fractional calculus

Simantini Majumdar, Somasri Hazra, Moutushi Dutta Choudhury, Suparna Dutta Sinha, Shantanu Das, Tapas Ranjan Middya, Sujata Tarafdar and Tapati Dutta

Colloids and Surfaces A: Physicochemical and Engineering Aspects, 2017, 516, 181
DOI: 10.1016/j.colsurfa.2016.12.019

Elongational rheology of bacterial biofilmsin situ

S. Grumbein, M. Werb, M. Opitz and O. Lieleg

Journal of Rheology, 2016, 60, 1085
DOI: 10.1122/1.4958667

Combination treatment to improve mucociliary transport of Pseudomonas aeruginosa biofilms

Kaitlyn R. Rouillard, Christopher P. Esther, William J. Kissner, Lucas M. Plott, Dean W. Bowman, Matthew R. Markovetz, David B. Hill and Abdelwahab Omri

PLoS ONE, 2024, 19, e0294120
DOI: 10.1371/journal.pone.0294120

Assaying How Phagocytic Success Depends on the Elasticity of a Large Target Structure

Megan Davis-Fields, Layla A. Bakhtiari, Ziyang Lan, Kristin N. Kovach, Liyun Wang, Elizabeth M. Cosgriff-Hernandez and Vernita D. Gordon

Biophysical Journal, 2019, 117, 1496
DOI: 10.1016/j.bpj.2019.08.043

The EPS-I exopolysaccharide transforms Ralstonia wilt pathogen biofilms into viscoelastic fluids for rapid dissemination in planta

Matthew L. Cope-Arguello, Jiayu Li, Zachary Konkel, Nathalie Aoun, Tabitha Cowell, Nicholas Wagner, A. Li Han Chan, Lan Thanh Chu, Samantha Wang, Mariama D. Carter, Caitilyn Allen, Lindsay J. Caverly, Loan Bui, Kristen M. DeAngelis, Matthew J. Wargo, Tuan M. Tran, Jonathan M. Jacobs, Harishankar Manikantan and Tiffany M. Lowe-Power

Proc. Natl. Acad. Sci. U.S.A., 2026, 123
DOI: 10.1073/pnas.2512757123

Microhydrological Niches in Soils: How Mucilage and EPS Alter the Biophysical Properties of the Rhizosphere and Other Biological Hotspots

Pascal Benard, Mohsen Zarebanadkouki, Mathilde Brax, Robin Kaltenbach, Iwan Jerjen, Federica Marone, Estelle Couradeau, Vincent J.M.N.L. Felde, Anders Kaestner and Andrea Carminati

Vadose Zone Journal, 2019, 18, 1
DOI: 10.2136/vzj2018.12.0211

Biophysics of biofilm infection

Philip S. Stewart

Pathogens Disease, 2014, 70, 212
DOI: 10.1111/2049-632X.12118

Yielding behaviour of chemically treated Pseudomonas fluorescens biofilms

Samuel G.V. Charlton, Saikat Jana and Jinju Chen

Biofilm, 2024, 8, 100209
DOI: 10.1016/j.bioflm.2024.100209

Effects of dissolved oxygen accelerated P. aeruginosa on the corrosion mechanism of X70 steel in simulated marine environments

Riguang Zhu, Guiyuan Xie, Zu-an Qin, Xingying Tang, Jianjun Cai and Jianqiao Yang

Materials Chemistry and Physics, 2025, 334, 130478
DOI: 10.1016/j.matchemphys.2025.130478

Engineered microbial consortia: strategies and applications

Katherine E. Duncker, Zachary A. Holmes and Lingchong You

Microb Cell Fact, 2021, 20
DOI: 10.1186/s12934-021-01699-9

Biofilm formation under high shear stress increases resilience to chemical and mechanical challenges

L. C. Simões, I. B. Gomes, H. Sousa, A. Borges and M. Simões

Biofouling, 2022, 38, 1
DOI: 10.1080/08927014.2021.2006189

Co-assembling living material as an in vitro lung epithelial infection model

Yuanhao Wu, Manuel Romero, Shaun N. Robertson, Samuel Fenn, Leanne Fisher, Iona Willingham, Luisa Martinez Pomares, Cosimo Ligorio, Jordan Hill, Wenhuan Bu, Zuoxin Zhou, Ricky D. Wildman, Amir M. Ghaemmaghami, Hongchen Sun, Jiaming Sun, Miguel Cámara and Alvaro Mata

Matter, 2024, 7, 216
DOI: 10.1016/j.matt.2023.10.029

Effect of predation on the mechanical properties and detachment of MABR biofilms

B. Kim, P. Perez-Calleja, M. Li and R. Nerenberg

Water Research, 2020, 186, 116289
DOI: 10.1016/j.watres.2020.116289

The mechanical properties of microbial surfaces and biofilms

Glauber R. de S. Araújo, Nathan B. Viana, Fran Gómez, Bruno Pontes and Susana Frases

The Cell Surface, 2019, 5, 100028
DOI: 10.1016/j.tcsw.2019.100028

Weak acids as an alternative anti-microbial therapy

Binu Kundukad, Gayathri Udayakumar, Erin Grela, Dhamanpreet Kaur, Scott A. Rice, Staffan Kjelleberg and Patrick S. Doyle

Biofilm, 2020, 2, 100019
DOI: 10.1016/j.bioflm.2020.100019

Beyond Microbial Inactivation: Unveiling the Potential of Detachment-Promoting Agents in Water Distribution System Biofilm Control

Fayzul Kabir, Md Ibnul Hasan and Srijan Aggarwal

ACS EST Water, 2024, 4, 2088
DOI: 10.1021/acsestwater.3c00734

Recent advances in studying single bacteria and biofilm mechanics

Catherine Even, Christian Marlière, Jean-Marc Ghigo, Jean-Marc Allain, Alba Marcellan and Eric Raspaud

Advances in Colloid and Interface Science, 2017, 247, 573
DOI: 10.1016/j.cis.2017.07.026

Biofilm mechanics: Implications in infection and survival

Erin S. Gloag, Stefania Fabbri, Daniel J. Wozniak and Paul Stoodley

Biofilm, 2020, 2, 100017
DOI: 10.1016/j.bioflm.2019.100017

Adaptive Interactions of Achromobacter spp. with Pseudomonas aeruginosa in Cystic Fibrosis Chronic Lung Co-Infection

Angela Sandri, Janus Anders Juul Haagensen, Laura Veschetti, Helle Krogh Johansen, Søren Molin, Giovanni Malerba, Caterina Signoretto, Marzia Boaretti and Maria M. Lleo

Pathogens, 2021, 10, 978
DOI: 10.3390/pathogens10080978

Single particle tracking reveals spatial and dynamic organization of theEscherichiacolibiofilm matrix

Alona Birjiniuk, Nicole Billings, Elizabeth Nance, Justin Hanes, Katharina Ribbeck and Patrick S Doyle

New J. Phys., 2014, 16, 085014
DOI: 10.1088/1367-2630/16/8/085014

The biofilm matrix: multitasking in a shared space

Hans-Curt Flemming, Eric D. van Hullebusch, Thomas R. Neu, Per H. Nielsen, Thomas Seviour, Paul Stoodley, Jost Wingender and Stefan Wuertz

Nat Rev Microbiol, 2023, 21, 70
DOI: 10.1038/s41579-022-00791-0

Quantitative 3D comparison of biofilm imaged by X‐ray micro‐tomography and two‐photon laser scanning microscopy

A.E. LARUE, P. SWIDER, P. DURU, D. DAVIAUD, M. QUINTARD and Y. DAVIT

Journal of Microscopy, 2018, 271, 302
DOI: 10.1111/jmi.12718

Combining Ivacaftor and Intensive Antibiotics Achieves Limited Clearance of Cystic Fibrosis Infections

Samantha L. Durfey, Sudhakar Pipavath, Anna Li, Anh T. Vo, Anina Ratjen, Suzanne Carter, Sarah J. Morgan, Matthew C. Radey, Brenda Grogan, Stephen J. Salipante, Michael J. Welsh, David A. Stoltz, Christopher H. Goss, Edward F. McKone, Pradeep K. Singh and Vaughn S. Cooper

mBio, 2021, 12
DOI: 10.1128/mbio.03148-21

Evaluating the Anti-biofilm Performance of Si and Resin Based Nanopillars

Satoka Matsumoto, Shigemitsu Tanaka, Toshihiro Nagao, Tomohiro Shimizu, Shoso Shingubara and Takeshi Ito

J. Photopol. Sci. Technol., 2024, 37, 379
DOI: 10.2494/photopolymer.37.379

Mechanical Comparison of Escherichia coli Biofilms with Altered Matrix Composition: A Study Combining Shear-Rheology and Microindentation

Macarena Siri, Adrien Sarlet, Ricardo Ziege, Laura Zorzetto, Carolina Sotelo Guzman, Shahrouz Amini, Regine Hengge, Kerstin G. Blank and Cécile M. Bidan

ACS Biomater. Sci. Eng., 2025, 11, 4523
DOI: 10.1021/acsbiomaterials.5c00261

Disruption and eradication ofP. aeruginosabiofilms using nitric oxide-releasing chitosan oligosaccharides

Katelyn P. Reighard, David B. Hill, Graham A. Dixon, Brittany V. Worley and Mark H. Schoenfisch

Biofouling, 2015, 31, 775
DOI: 10.1080/08927014.2015.1107548

Biofilm Adhesion to Surfaces is Modulated by Biofilm Wettability and Stiffness

Martin Kretschmer, Carina Anke Schüßler and Oliver Lieleg

Adv Materials Inter, 2021, 8
DOI: 10.1002/admi.202001658

Mechanical Resilience of Biofilms toward Environmental Perturbations Mediated by Extracellular Matrix

Qiuting Zhang, Danh Nguyen, Jung‐Shen B. Tai, XJ Xu, Japinder Nijjer, Xin Huang, Ying Li and Jing Yan

Adv Funct Materials, 2022, 32
DOI: 10.1002/adfm.202110699

Synergistic combination of malic acid with sodium hypochlorite impairs biofilm of Cronobacter sakazakii

Rajni Chauhan, Savita Kumari, Gunjan Goel and Wamik Azmi

LWT, 2022, 155, 112902
DOI: 10.1016/j.lwt.2021.112902

A novel method for rheological characterization of biofouling layers developing in Membrane Bioreactors (MBR)

S.I. Patsios, T.B. Goudoulas, E.G. Kastrinakis, S.G. Nychas and A.J. Karabelas

Journal of Membrane Science, 2015, 482, 13
DOI: 10.1016/j.memsci.2015.02.016

Multicomponent model of deformation and detachment of a biofilm under fluid flow

Giordano Tierra, Juan P. Pavissich, Robert Nerenberg, Zhiliang Xu and Mark S. Alber

J. R. Soc. Interface., 2015, 12, 20150045
DOI: 10.1098/rsif.2015.0045

Pseudomonas aeruginosa: new insights into pathogenesis and host defenses

Shaan L. Gellatly and Robert E.W. Hancock

Pathogens Disease, 2013, 67, 159
DOI: 10.1111/2049-632X.12033

Extracellular polymeric substances- the real target in eradicating pseudomonad biofilms

Srinithi Muthuraman, Jon Palmer and Steve Flint

Food Bioscience, 2025, 71, 107330
DOI: 10.1016/j.fbio.2025.107330

Direct Comparison of Physical Properties of Bacillus subtilis NCIB 3610 and B-1 Biofilms

Sara Kesel, Stefan Grumbein, Ina Gümperlein, Marwa Tallawi, Anna-Kristina Marel, Oliver Lieleg, Madeleine Opitz and J. L. Schottel

Appl Environ Microbiol, 2016, 82, 2424
DOI: 10.1128/AEM.03957-15

Bacterial biomechanics—From individual behaviors to biofilm and the gut flora

Takuji Ishikawa, Toshihiro Omori and Kenji Kikuchi

APL Bioengineering, 2020, 4
DOI: 10.1063/5.0026953

Soft Robotic Concepts in Catheter Design: an On‐Demand Fouling‐Release Urinary Catheter

Vrad Levering, Qiming Wang, Phanindhar Shivapooja, Xuanhe Zhao and Gabriel P. López

Adv Healthcare Materials, 2014, 3, 1588
DOI: 10.1002/adhm.201400035

Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms

Yun Shen, Pin Chieh Huang, Conghui Huang, Peng Sun, Guillermo L. Monroy, Wenjing Wu, Jie Lin, Rosa M. Espinosa-Marzal, Stephen A. Boppart, Wen-Tso Liu and Thanh H. Nguyen

npj Biofilms Microbiomes, 2018, 4
DOI: 10.1038/s41522-018-0058-1

Anti-Biofilm Performance of Resin Nanopillars Inspired from Cicada Wing Surface for Staphylococcus spp.

Satoka Matsumoto, Hiroaki Tatsuoka, Miki Yoshii, Toshihiro Nagao, Tomohiro Shimizu, Shoso Shingubara, Shigemitsu Tanaka and Takeshi Ito

Biomimetics, 2024, 9, 739
DOI: 10.3390/biomimetics9120739

Mycobacterium abscessus biofilms have viscoelastic properties which may contribute to their recalcitrance in chronic pulmonary infections

Erin S. Gloag, Daniel J. Wozniak, Paul Stoodley and Luanne Hall-Stoodley

Sci Rep, 2021, 11
DOI: 10.1038/s41598-021-84525-x

An experimental and computational study of the hydrodynamics of high-velocity water microdrops for interproximal tooth cleaning

A. Rmaile, D. Carugo, L. Capretto, J.A. Wharton, P.J. Thurner, M. Aspiras, M. Ward, M. De Jager and P. Stoodley

Journal of the Mechanical Behavior of Biomedical Materials, 2015, 46, 148
DOI: 10.1016/j.jmbbm.2015.02.010

Quantitative Analysis of Amyloid-Integrated Biofilms Formed by Uropathogenic Escherichia coli at the Air-Liquid Interface

Cynthia Wu, Ji Youn Lim, Gerald G. Fuller and Lynette Cegelski

Biophysical Journal, 2012, 103, 464
DOI: 10.1016/j.bpj.2012.06.049

Molecular Determinants of Mechanical Properties of V. cholerae Biofilms at the Air-Liquid Interface

Emily C. Hollenbeck, Jiunn C.N. Fong, Ji Youn Lim, Fitnat H. Yildiz, Gerald G. Fuller and Lynette Cegelski

Biophysical Journal, 2014, 107, 2245
DOI: 10.1016/j.bpj.2014.10.015

Use of organic acids for prevention and removal of Bacillus subtilis biofilms on food contact surfaces

Meltem Yesilcimen Akbas and Seyda Cag

Food sci. technol. int., 2016, 22, 587
DOI: 10.1177/1082013216633545

Viscoelasticity of biofilms and their recalcitrance to mechanical and chemical challenges

Brandon W. Peterson, Yan He, Yijin Ren, Aidan Zerdoum, Matthew R. Libera, Prashant K. Sharma, Arie-Jan van Winkelhoff, Danielle Neut, Paul Stoodley, Henny C. van der Mei and Henk J. Busscher

FEMS Microbiology Reviews, 2015, 39, 234
DOI: 10.1093/femsre/fuu008

Nonlinear viscoelasticity of filamentous fungal biofilms of Neurospora discreta

N.M. Aiswarya, Shamas Tabraiz, Himani Taneja, Asma Ahmed and R. Aravinda Narayanan

Biofilm, 2024, 8, 100227
DOI: 10.1016/j.bioflm.2024.100227

Effect of organic acids on biofilm formation and quorum signaling of pathogens from fresh fruits and vegetables

Balagopal Amrutha, Kothandapani Sundar and Prathapkumar Halady Shetty

Microbial Pathogenesis, 2017, 111, 156
DOI: 10.1016/j.micpath.2017.08.042

Molecular Architecture and Assembly Principles of Vibrio cholerae Biofilms

Veysel Berk, Jiunn C. N. Fong, Graham T. Dempsey, Omer N. Develioglu, Xiaowei Zhuang, Jan Liphardt, Fitnat H. Yildiz and Steven Chu

Science, 2012, 337, 236
DOI: 10.1126/science.1222981

Rheological variability of Pseudomonas aeruginosa biofilms

Lingjuan Qi and Gordon F. Christopher

Rheol Acta, 2021, 60, 219
DOI: 10.1007/s00397-021-01260-w

Experimental challenges in determining the rheological properties of bacterial biofilms

Steffen Geisel, Eleonora Secchi and Jan Vermant

Interface Focus., 2022, 12
DOI: 10.1098/rsfs.2022.0032

Mechanistic action of weak acid drugs on biofilms

Binu Kundukad, Megan Schussman, Kaiyuan Yang, Thomas Seviour, Liang Yang, Scott A. Rice, Staffan Kjelleberg and Patrick S. Doyle

Sci Rep, 2017, 7
DOI: 10.1038/s41598-017-05178-3

Formation of Kinneyia via shear-induced instabilities in microbial mats

Katherine Thomas, Stephan Herminghaus, Hubertus Porada and Lucas Goehring

Phil. Trans. R. Soc. A., 2013, 371, 20120362
DOI: 10.1098/rsta.2012.0362

Regulating, Measuring, and Modeling the Viscoelasticity of Bacterial Biofilms

Samuel G. V. Charlton, Michael A. White, Saikat Jana, Lucy E. Eland, Pahala Gedara Jayathilake, J. Grant Burgess, Jinju Chen, Anil Wipat, Thomas P. Curtis and George O’Toole

J Bacteriol, 2019, 201
DOI: 10.1128/JB.00101-19

Plant growth‐promoting rhizobacteria mediate soil hydro‐physical properties: An investigation with Bacillus subtilis and its mutants

Fatema Kaniz, Wenjuan Zheng, Harsh Bais and Yan Jin

Vadose Zone Journal, 2023, 22
DOI: 10.1002/vzj2.20274

Not gently down the stream: flow induces amyloid bonding in environmental and pathological fungal biofilms

Peter N. Lipke and Marcio Rodrigues

mBio, 2025, 16
DOI: 10.1128/mbio.00203-25

Microstructure and Mechanical Properties of In Situ Streptococcus mutans Biofilms

Michael S. Waters, Santanu Kundu, Nancy J. Lin and Sheng Lin-Gibson

ACS Appl. Mater. Interfaces, 2014, 6, 327
DOI: 10.1021/am404344h

Microrheology for biomaterial design

Katherine Joyner, Sydney Yang and Gregg A. Duncan

APL Bioengineering, 2020, 4
DOI: 10.1063/5.0013707

Specific Disruption of Established Pseudomonas aeruginosa Biofilms Using Polymer-Attacking Enzymes

Kristin N. Kovach, Derek Fleming, Marilyn J. Wells, Kendra P. Rumbaugh and Vernita Diane Gordon

Langmuir, 2020, 36, 1585
DOI: 10.1021/acs.langmuir.9b02188

Sustainable treatment scheme for in-situ remediation of contaminated drains using engineered natural systems

Mohammed Iqbal Thayyil and Ligy Philip

Chemosphere, 2024, 361, 142469
DOI: 10.1016/j.chemosphere.2024.142469

Biofilm aggregates and the host airway-microbial interface

Luanne Hall-Stoodley and Karen S. McCoy

Front. Cell. Infect. Microbiol., 2022, 12
DOI: 10.3389/fcimb.2022.969326

Advances in the microrheology of complex fluids

Thomas Andrew Waigh

Rep. Prog. Phys., 2016, 79, 074601
DOI: 10.1088/0034-4885/79/7/074601

Altering the viscoelastic properties of mucus-grown Pseudomonas aeruginosa biofilms affects antibiotic susceptibility

Kaitlyn R. Rouillard, Matthew R. Markovetz, William J. Kissner, William L. Boone, Lucas M. Plott and David B. Hill

Biofilm, 2023, 5, 100104
DOI: 10.1016/j.bioflm.2023.100104

Biofilm Properties and Their Implications for Cleaning Processes in the Food Industry – A Review

Caroline Bachlechner, Elena Zand, Vincent Eisenrauch, Marc Mauermann, Henry Jäger and Felix Schottroff

Journal of Food Protection, 2026, 89, 100695
DOI: 10.1016/j.jfp.2025.100695

Antioxidants of Fruit Extracts as Antimicrobial Agents against Pathogenic Bacteria

Sureeporn Suriyaprom, Pascale Mosoni, Sabine Leroy, Thida Kaewkod, Mickaël Desvaux and Yingmanee Tragoolpua

Antioxidants, 2022, 11, 602
DOI: 10.3390/antiox11030602

Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling

Jing Yan, Alexis Moreau, Sepideh Khodaparast, Antonio Perazzo, Jie Feng, Chenyi Fei, Sheng Mao, Sampriti Mukherjee, Andrej Košmrlj, Ned S. Wingreen, Bonnie L. Bassler and Howard A. Stone

Advanced Materials, 2018, 30
DOI: 10.1002/adma.201804153

Self-locomotive, antimicrobial microrobot (SLAM) swarm for enhanced biofilm elimination

Yu-Heng Deng, Tomas Ricciardulli, Jungeun Won, Matthew A. Wade, Simon A. Rogers, Stephen A. Boppart, David W. Flaherty and Hyunjoon Kong

Biomaterials, 2022, 287, 121610
DOI: 10.1016/j.biomaterials.2022.121610

Modelling and analysis of a gene-regulatory feed-forward loop with basal expression of the second regulator

Louisa Roselius, Dirk Langemann, Johannes Müller, Burkhard A. Hense, Stefan Filges, Dieter Jahn and Richard Münch

Journal of Theoretical Biology, 2014, 363, 290
DOI: 10.1016/j.jtbi.2014.08.043

High-throughput assays show the timescale for phagocytic success depends on the target toughness

Layla A. Bakhtiari, Marilyn J. Wells and Vernita D. Gordon

Biophysics Reviews, 2021, 2
DOI: 10.1063/5.0057071

Metal ions weaken the hydrophobicity and antibiotic resistance of Bacillus subtilis NCIB 3610 biofilms

Carolina Falcón García, Martin Kretschmer, Carlos N. Lozano-Andrade, Markus Schönleitner, Anna Dragoŝ, Ákos T. Kovács and Oliver Lieleg

npj Biofilms Microbiomes, 2020, 6
DOI: 10.1038/s41522-019-0111-8

Visualization of Microbiological Processes Underlying Stress Relaxation inPseudomonas aeruginosaBiofilms

Brandon W. Peterson, Henk J. Busscher, Prashant K. Sharma and Henny C. van der Mei

Microsc Microanal, 2014, 20, 912
DOI: 10.1017/S1431927614000361

Disruption of Putrescine Biosynthesis in Shewanella oneidensis Enhances Biofilm Cohesiveness and Performance in Cr(VI) Immobilization

Yuanzhao Ding, Ni Peng, Yonghua Du, Lianghui Ji and Bin Cao

Appl Environ Microbiol, 2014, 80, 1498
DOI: 10.1128/AEM.03461-13

Effect of Nonphosphorus Corrosion Inhibitors on Biofilm Pore Structure and Mechanical Properties

Conghui Huang, Peter P. Sun, Jungeun Won, Yin Wang, Stephen A. Boppart and Thanh H. Nguyen

Environ. Sci. Technol., 2020, 54, 14716
DOI: 10.1021/acs.est.0c04645

A microfluidic method and custom model for continuous, non-intrusive biofilm viscosity measurements under different nutrient conditions

J. Greener, M. Parvinzadeh Gashti, A. Eslami, M. P. Zarabadi and S. M. Taghavi

Biomicrofluidics, 2016, 10
DOI: 10.1063/1.4968522

The role of surface adhesion on the macroscopic wrinkling of biofilms

Steffen Geisel, Eleonora Secchi and Jan Vermant

eLife, 2022, 11
DOI: 10.7554/eLife.76027