A hitchhiker's guide to G-quadruplex ligands

David Monchaud and Marie-Paule Teulade-Fichou

Org. Biomol. Chem., 2008, 6, 627
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Binding modes of a core-extended metalloporphyrin to human telomeric DNA G-quadruplexes

Jenifer Rubio-Magnieto, Florent Di Meo, Mamadou Lo, Cécile Delcourt, Sébastien Clément, Patrick Norman, Sébastien Richeter, Mathieu Linares and Mathieu Surin

Org. Biomol. Chem., 2015, 13, 2453
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Tetramethylpyridiniumporphyrazines—a new class of G-quadruplex inducing and stabilising ligands

Diana P. N. Gonçalves, Raphaël Rodriguez, Shankar Balasubramanian and Jeremy K. M. Sanders

Chem. Commun., 2006, 4685
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Cationic corrole derivatives: a new family of G-quadruplex inducing and stabilizing ligands

Boqiao Fu, Jing Huang, Lige Ren, Xiaocheng Weng, Yangyang Zhou, Yuhao Du, Xiaojun Wu, Xiang Zhou and Guangfu Yang

Chem. Commun., 2007, 3264
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Steric effects direct the binding of porphyrins to tetramolecular quadruplex DNA

Robert McGuire Jr. and David R. McMillin

Chem. Commun., 2009, 7393
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Theoretical insights into the effect of size and substitution patterns of azobenzene derivatives on the DNA G-quadruplex

Kiana Gholamjani Moghaddam, Goran Giudetti, Wouter Sipma and Shirin Faraji

Phys. Chem. Chem. Phys., 2020, 22, 26944
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Targeting telomeric G-quadruplexes with the ruthenium(ii) complexes [Ru(bpy)2(ptpn)]2+ and [Ru(phen)2(ptpn)]2+

Xiang Chen, Jing-Heng Wu, Ying-Wei Lai, Rong Zhao, Hui Chao and Liang-Nian Ji

Dalton Trans., 2013, 42, 4386
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Selective G-quadruplex stabilizers: Schiff-base metal complexes with anticancer activity

Alessio Terenzi, Riccardo Bonsignore, Angelo Spinello, Carla Gentile, Annamaria Martorana, Cosimo Ducani, Björn Högberg, Anna Maria Almerico, Antonino Lauria and Giampaolo Barone

RSC Adv., 2014, 4, 33245
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N-fused porphyrin with pyridinium side-arms: a new class of aromatic ligand with DNA-binding ability

Yoshiya Ikawa, Satoshi Touden and Hiroyuki Furuta

Org. Biomol. Chem., 2011, 9, 8068
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Cationic Porphyrin Induced a Telomeric DNA to G‐Quadruplex Form in Water

Takashi Murashima, Daichi Sakiyama, Daisuke Miyoshi, Masanori Kuriyama, Takashi Yamada, Toshifumi Miyazawa, Naoki Sugimoto and Viktor Brabec

Bioinorganic Chemistry and Applications, 2008, 2008
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A water soluble tri-cationic porphyrin–EDTA conjugate induces apoptosis in human neuroendocrine tumor cell lines

Gert Schwach, Patchanita Thamyongkit, Lorenz Michael Reith, Bernhard Svejda, Günther Knör, Roswitha Pfragner and Wolfgang Schoefberger

Bioorganic Chemistry, 2012, 40, 108
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“One Ring to Bind Them All”—Part I: The Efficiency of the Macrocyclic Scaffold for G‐Quadruplex DNA Recognition

David Monchaud, Anton Granzhan, Nicolas Saettel, Aurore Guédin, Jean-Louis Mergny, Marie-Paule Teulade-Fichou and R. Eritja

Journal of Nucleic Acids, 2010, 2010
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Effects of Metal Coordination Geometry on Stabilization of Human Telomeric Quadruplex DNA by Square-Planar and Square-Pyramidal Metal Complexes

Anna Arola-Arnal, Jordi Benet-Buchholz, Stephen Neidle and Ramón Vilar

Inorg. Chem., 2008, 47, 11910
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DNA Minicircles Connected via G‐Quadruplex Interaction Modules

Diana P. N. Gonçalves, Thorsten L. Schmidt, Martin B. Koeppel and Alexander Heckel

Small, 2010, 6, 1347
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Short LNA-modified oligonucleotide probes as efficient disruptors of DNA G-quadruplexes

Souroprobho Chowdhury, Jiayi Wang, Sabrina Pia Nuccio, Hanbin Mao and Marco Di Antonio

Nucleic Acids Research, 2022, 50, 7247
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Effect of Loop Orientation on Quadruplex−TMPyP4 Interaction

Amit Arora and Souvik Maiti

J. Phys. Chem. B, 2008, 112, 8151
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Inhibition of Dicing of Guanosine‐Rich shRNAs by Quadruplex‐Binding Compounds

Anja Henn, Astrid Joachimi, Diana P. N. Gonçalves, David Monchaud, Marie‐Paule Teulade‐Fichou, Jeremy K. M. Sanders and Jörg S. Hartig

ChemBioChem, 2008, 9, 2722
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Thermodynamics-Hydration Relationships within Loops That Affect G-Quadruplexes under Molecular Crowding Conditions

Takeshi Fujimoto, Shu-ichi Nakano, Naoki Sugimoto and Daisuke Miyoshi

J. Phys. Chem. B, 2013, 117, 963
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Facile synthesis of ortho-pyridyl-substituted corroles and molecular structures of analogous porphyrins

Irena Saltsman, Mark Botoshansky and Zeev Gross

Tetrahedron Letters, 2008, 49, 4163
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Investigation of the Scope of a New Route to ABCD-Bilanes and ABCD-Porphyrins

Dilek Kiper Dogutan and Jonathan S. Lindsey

J. Org. Chem., 2008, 73, 6728
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BRACO19 analog dimers with improved inhibition of telomerase and hPot 1

Yuan-Te Fu, Brian R. Keppler, Joana Soares and Michael B. Jarstfer

Bioorganic & Medicinal Chemistry, 2009, 17, 2030
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Induction of G-quadruplex DNA structure by Zn(II) 5,10,15,20-tetrakis(N-methyl-4-pyridyl)porphyrin

Amlan J. Bhattacharjee, Karan Ahluwalia, Scott Taylor, Ou Jin, John M. Nicoludis, Robert Buscaglia, J. Brad Chaires, David J.P. Kornfilt, David G.S. Marquardt and Liliya A. Yatsunyk

Biochimie, 2011, 93, 1297
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Synthesis of bisquinoline–pyrrole oligoamide as G-quadruplex binding ligand

Chi Wi Ong, Meng-Chi Liu, Kun-Da Lee, Keng Wei Chang, Ya-Ting Yang, Hung-Wei Tung and Keith R. Fox

Tetrahedron, 2012, 68, 5453
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Surface plasmon resonance for probing quadruplex folding and interactions with proteins and small molecules

James E. Redman

Methods, 2007, 43, 302
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Design and synthesis of new series of dipyrromethane-coumarin and porphyrin-coumarin derivatives: Excellent anticancer agents

Megharaja Holiyachi, Samundeeswari L. Shastri, Bahubali M. Chougala, Nirmala S. Naik, Varsha Pawar, Lokesh A. Shastri, Shrinivas D. Joshi and Vinay A. Sunagar

Journal of Molecular Structure, 2021, 1237, 130424
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The effect of pyridyl substituents on the thermodynamics of porphyrin binding to G-quadruplex DNA

Gerald B. Rowland, Kerry Barnett, Jesse I. DuPont, Gopalakrishna Akurathi, Vu H. Le and Edwin A. Lewis

Bioorganic & Medicinal Chemistry, 2013, 21, 7515
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Microwave synthesis of cationic ABAB di-imidazolyl fluorinated porphyrins and manganese complexes

Daniela S.S. Teixeira, Rafael T. Aroso, Joseany M. S. Almeida, Christopher M.A. Brett, Mário J.F. Calvete, Sara M.A. Pinto and Mariette M. Pereira

J. Porphyrins Phthalocyanines, 2023, 27, 614
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Survey of the year 2006 commercial optical biosensor literature

Rebecca L. Rich and David G. Myszka

J of Molecular Recognition, 2007, 20, 300
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Cationic N-confused porphyrin derivative as a better molecule scaffold for G-quadruplex recognition

Yuhao Du, Dan Zhang, Wei Chen, Ming Zhang, Yangyang Zhou and Xiang Zhou

Bioorganic & Medicinal Chemistry, 2010, 18, 1111
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Dinuclear Ruthenium(II) Complexes That Induce and Stabilise G‐Quadruplex DNA

Li Xu, Xiang Chen, Jingheng Wu, Jinquan Wang, Liangnian Ji and Hui Chao

Chemistry A European J, 2015, 21, 4008
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Influence of the SPR Experimental Conditions on the G-Quadruplex DNA Recognition by Porphyrin Derivatives

E. Prado, L. Bonnat, H. Bonnet, T. Lavergne, A. Van der Heyden, G. Pratviel, J. Dejeu and E. Defrancq

Langmuir, 2018, 34, 13057
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Photoinduced antibacterial activity of two dicationic 5,15-diarylporphyrins

Viviana T. Orlandi, Enrico Caruso, Gianluca Tettamanti, Stefano Banfi and Paola Barbieri

Journal of Photochemistry and Photobiology B: Biology, 2013, 127, 123
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A platinum–quinacridine hybrid as a G-quadruplex ligand

Hélène Bertrand, Sophie Bombard, David Monchaud and Marie-Paule Teulade-Fichou

J Biol Inorg Chem, 2007, 12, 1003
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Studies on synthesis, characterization, and G-quadruplex binding of Ru(II) complexes containing two dppz ligands

Jing Sun, Yan An, Li Zhang, Huo-Yan Chen, Yan Han, Yu-Jia Wang, Zong-Wan Mao and Liang-Nian Ji

Journal of Inorganic Biochemistry, 2011, 105, 149
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Retraction: Human telomeric G‐quadruplex: targeting with small molecules

Amit Arora, Niti Kumar, Tani Agarwal and Souvik Maiti

The FEBS Journal, 2010, 277, 1345
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Interaction of human telomeric DNA with N- methyl mesoporphyrin IX

John M. Nicoludis, Steven P. Barrett, Jean-Louis Mergny and Liliya A. Yatsunyk

Nucleic Acids Research, 2012, 40, 5432
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Photoresponsive Formation of an Intermolecular Minimal G‐Quadruplex Motif

Julie Thevarpadam, Irene Bessi, Oliver Binas, Diana P. N. Gonçalves, Chavdar Slavov, Hendrik R. A. Jonker, Christian Richter, Josef Wachtveitl, Harald Schwalbe and Alexander Heckel

Angewandte Chemie, 2016, 128, 2788
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Alkaline earth cations binding mode tailors excited-state charge transfer properties of guanine quadruplex: A TDDFT study

Branislav Milovanović, Milena Petković and Mihajlo Etinski

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2022, 267, 120584
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TripDesign: A DNA Triplex Design Approach Based on Interaction Forces

Lijun Sun, Ben Cao, Yuan Liu, Peijun Shi, Yanfen Zheng, Bin Wang and Qiang Zhang

J. Phys. Chem. B, 2022, 126, 8708
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Artificial Intelligence in Aptamer–Target Binding Prediction

Zihao Chen, Long Hu, Bao-Ting Zhang, Aiping Lu, Yaofeng Wang, Yuanyuan Yu and Ge Zhang

IJMS, 2021, 22, 3605
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Study of the interaction between the G-quadruplex-forming thrombin-binding aptamer and the porphyrin 5,10,15,20-tetrakis-(N-methyl-4-pyridyl)-21,23H-porphyrin tetratosylate

Miquel del Toro, Raimundo Gargallo, Ramon Eritja and Joaquim Jaumot

Analytical Biochemistry, 2008, 379, 8
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Stability and Molecular Recognition of Quadruplexes with Different Loop Length in the Absence and Presence of Molecular Crowding Agents

Amit Arora and Souvik Maiti

J. Phys. Chem. B, 2009, 113, 8784
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Synthesis, Structural Characterization, and Quadruplex DNA Binding Studies of Platinum(II)-Terpyridine Complexes

Kogularamanan Suntharalingam, Andrew J. P. White and Ramon Vilar

Inorg. Chem., 2009, 48, 9427
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Rational or Statistical Routes from 1-Acyldipyrromethanes to meso-Substituted Porphyrins. Distinct Patterns, Multiple Pyridyl Substituents, and Amphipathic Architectures

Dilek Kiper Dogutan, Marcin Ptaszek and Jonathan S. Lindsey

J. Org. Chem., 2008, 73, 6187
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G-quadruplex vs. duplex-DNA binding of nickel(II) and zinc(II) Schiff base complexes

Riccardo Bonsignore, Alessio Terenzi, Angelo Spinello, Annamaria Martorana, Antonino Lauria, Anna Maria Almerico, Bernhard K. Keppler and Giampaolo Barone

Journal of Inorganic Biochemistry, 2016, 161, 115
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Nano‐Supramolecular Assemblies Constructed from Water‐Soluble Bis(calix[5]arenes) with Porphyrins and Their Photoinduced Electron Transfer Properties

Dong‐Sheng Guo, Kun Chen, Hong‐Qing Zhang and Yu Liu

Chemistry An Asian Journal, 2009, 4, 436
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Photoresponsive Formation of an Intermolecular Minimal G‐Quadruplex Motif

Julie Thevarpadam, Irene Bessi, Oliver Binas, Diana P. N. Gonçalves, Chavdar Slavov, Hendrik R. A. Jonker, Christian Richter, Josef Wachtveitl, Harald Schwalbe and Alexander Heckel

Angew Chem Int Ed, 2016, 55, 2738
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