Open Access Article
D. Coomber
a,
O. Rusli
b,
H. Sharmaa,
H. E. Leeb,
J. D. Evans
c,
N. J. Rijs
b,
C. Hua
d and
F. Pfeffer
*a
aSchool of Life and Environmental Sciences, Centre for Sustainable Bioproducts, Deakin University, Waurn Ponds, VIC 3216, Australia. E-mail: fred.pfeffer@deakin.edu.au
bSchool of Chemistry, University of New South Wales, Sydney, NSW 2052, Australia
cSchool of Physics, Chemistry and Earth Sciences, Adelaide University, Adelaide, SA 5005, Australia
dSchool of Chemistry, The University of Melbourne, Parkville, VIC 3010, Australia
First published on 10th February 2026
An efficient, customisable approach for the assembly of covalent macrocycles and cages has been developed using the reaction of fused polynorbornane based bis-diols and commercially available boronic acids. The ability to customise the requisite bis-diol to various lengths and dihedral angles (here both 90° and 180°) and then combine with di or triboronic acids allows access to range of architectures. The resultant constructs were resistant to hydrolysis including 24-hour exposure to dilute solutions of either acetic or trifluoroacetic acid.
As boronic ester formation is a condensation reaction, many architectures are prone to complete disassembly in the presence of water or methanol (see Northrop12,13 or Akine14). A landmark approach for improving stability was recently described by Kirchner and Beuerle,15 whereby incorporating steric bulk (t-Bu groups) around the phenyl diboronic acid tecton 2 conferred stability to the final [12 + 8] ‘cube’ (Fig. 1). Notably, the cube was stable in (1
:
1) chloroform/methanol solution—even in the presence of acetic acid—with trifluoroacetic acid required for disassembly. The strategy, while effective, necessitated multistep synthesis of a custom boronic acid tecton. This effort was in addition to that required for synthesis of the tris-catechol tecton 1 (Fig. 1).
A surprisingly underexplored strategy for improving stability is variation of the diol component of the tecton—the vast majority of examples are based on catechol (see Northrop,12,13,16,17 Kobayashi,18 Akine,14 Mastalarz8,19 and Beuerle20,21). Indeed, outside of the library of cyclopentanediol examples from Iwasawa22,23 and the recent bicyclo[2.2.2]octane diol example from Yamada,24 few examples exist in which aliphatic diols are employed. Of considerable interest, simple aliphatic diols have been shown to form hydrolytically stable boronic esters,25 and Roy and Brown specifically identified exo-norbornane diols as forming thermodynamically stable boronic esters—more stable than both catechol based and cyclopentanediol based boronic esters.26,27† It is therefore surprising that the use of tectons based on norbornane diols in the assembly of robust architectures has yet to be explored.
It was envisaged that exo-norbornane diols could be incorporated as terminal units in a fused [n]polynorbornane scaffold (Fig. 1) and these tectons would ultimately generate highly stable boronic ester assemblies upon reaction with readily available boronic acids. The known, efficient, convergent methodology28–33 to access fused [n]polynorbornane frameworks of predictable, conformationally preorganised geometries made this an attractive proposition as related frameworks have been used in anion recognition34–36 as well as the assembly of metal organic cages37,38 and metal organic frameworks.39
Herein, the synthesis of two bis(norbornane diol) tectons and their self-assembly into macrocycles and molecular cages has been completed with absolute structures determined by single crystal X-ray diffraction (SC-XRD). Furthermore, the stability of the norbornane boronic ester assemblies to acid catalysed hydrolysis (both AcOH and TFA) has also been established.
For the shorter tecton featuring a 90° dihedral angle, synthesis was accomplished in only three steps from readily available materials (Scheme 1). The ruthenium catalysed Mitsudo reaction of norbornadiene 6 with dimethyl acetylenedicarboxylate (DMAD) afforded tetraester 7Me,40 and subsequent Diels–Alder cycloaddition with cyclopentadiene (CPD) gave diene 8Me. Upjohn dihydroxylation afforded the desired bis-diol 3Me in excellent 98% yield (60% overall/3 steps). The overall structure of the bis-diol was confirmed by SC-XRD and found to have a dihedral angle ∼95° (see SI for full details). An advantage of the approach was compatibility with Upjohn dihydroxylation. For related aliphatic bis-diol tectons synthesised by Iwasawa22 and Yamada,24 the Upjohn dihydroxylation of bis(cyclopentene) or bis(bicyclo[2.2.2]octene) scaffolds was not stereoselective and as such only modest yields (35% and 27% respectively) of the desired tectons were obtained. For the norbornane based scaffold 8Me the Upjohn dihydroxylation was completely stereoselective for exo-addition, and highly efficient (yields consistently >90%).
For tecton 4 featuring a 180° dihedral angle, the use of terminal endo-norbornane diol groups was envisaged (Fig. 1 and Scheme 1). First, the known endo-carbonate 11 was synthesised using a method adapted from Nencka et al.41 before Mitsudo reaction42 was used to access diester carbonate 12. Microwave mediated 1,3-dipolar ACE cycloaddition of the carbonate 12 with the known bis-epoxide 1329 furnished the fused [5]polynorbornane bis-carbonate framework 14. Following decarboxylation, the desired bis-diol tecton 4 was isolated in 66% yield (7% overall/6 steps).
The two methods highlight the versatility of the polynorbornane approach, employing multiple, stereoselective cycloadditions (Mitsudo, Diels–Alder and ACE) to access bis-diol frameworks of custom length and dihedral angle in an atom-economical manner. Indeed, the desired 90° tecton 3Me was synthesised on a 400 mg scale and the 180° tecton 4 up to 100 mg.
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| Scheme 2 Synthesis of [1 + 2] assemblies and [4 + 4] macrocycle. (i) EtOH, 130 °C, 5 min, μw. (ii) CHCl3, 100 °C, 12 h. | ||
Given the expected stability of the norbornane boronic ester linkage, an investigation into the dynamic nature of the reaction was conducted. A 1
:
2 mixture of both [1 + 2]F and free phenyl boronic acid 15H in (5
:
2) DMSO-d6:CDCl3 was prepared and monitored by 1H and 19F NMR spectroscopy (see SI for full details). Over 140 hours, resonances corresponding to the free fluorophenyl boronic acid 15F appeared, and resonances corresponding to the phenyl boronic acid 15H decreased. At equilibrium, the relative integrations of 15H
:
15F were approximately 1
:
1, suggesting little to no electronic effect on the lability of the boronic ester pair in this instance. Of interest, at no point were resonances corresponding to the free norbornane diol observed, indicating that the exchange of phenyl groups was likely proceeding through direct transesterification of the boronic esters. Given slow exchange occurred under mild conditions, the norbornane boronic esters appear to be suitably dynamic such that assembly processes are capable of error correction to form thermodynamic products.
It was envisaged that the physical properties of the assembly could be modulated by changing the methyl esters of the 90° tecton prior to reaction with the diboronic acid. To this end, the synthesis of analogues that contained benzyl esters (for enhanced crystallinity) and diethylene-glycol monomethyl ether (DEG) esters (for enhanced solubility) were pursued (Scheme 3). Hydrolysis of the methyl esters of tetraester 7Me and subsequent re-esterification (via acid chloride)43 with the appropriate alcohol gave the desired tetraesters 7Bn and 7DEG. The same sequence of twin-Diels–Alder cycloaddition and Upjohn dihydroxylation gave the desired ester modified bis-diols (see SI for details). Reaction of the tuned bis-diols 3Bn and 3DEG with benzene-1,4-diboronic acid 5 gave good yields of macrocyclic compounds (benzyl: 93%, DEG: 98%) that exhibited 1H NMR spectra similar (other than the esters) to those of the macrocycle formed using bis-diol 3Me (see SI for details).
Pleasingly, the benzyl substituted boronic ester assembly [4 + 4]Bn was amenable to crystallisation (see SI for full details) and high-quality cubic crystals were obtained by slow evaporation of a solution of [4 + 4]Bn in DMSO/DCM/acetone. The crystal structure was solved in the body centred cubic space group I23. The large unit cell (a = b = c = 33.945 Å) and rapid desolvation (deterioration of the crystal) led to difficulty obtaining resolution beyond ∼0.8 Å. Nevertheless, the X-ray structure was solved as the target, confirming that the synthesis was indeed proceeding to the expected [4 + 4] macrocycle. Interestingly, the macrocycle [4 + 4]Bn appears as a rectangle in the crystal structure, seemingly as a result of crystal packing effects, with the shorter side of one rectangle fitting into the face (parallel to the longer side) of a second macrocycle (i.e. green macrocycles fitting into red macrocycles in Fig. 2A).
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| Fig. 2 (A) SC-XRD structure of macrocycle [4 + 4]Bn, a portion of the unit cell is highlighted to emphasise the packing arrangement. (B) nESI-HRMS spectrum of macrocycle [4 + 4]DEG. | ||
Due to its enhanced solubility, the DEG substituted macrocycle [4 + 4]DEG was more readily analysed by nanoelectrospray ionisation high resolution mass spectrometry (nESI-HRMS). The most abundant ion (m/z 1386.5925) was in excellent agreement with both the predicted isotope pattern (Fig. 2B) and mass-to-charge of the triply sodiated [4 + 4] macrocycle (predicted m/z 1386.5922), confirming the selective synthesis of the [4 + 4] macrocycle. Other than the desired [4 + 4] macrocycles, no significant signals corresponding to other macrocycles or intermediates were present within the mass spectrum (Fig. 2B).
Thus, the assembly of bis-diol 3Me (and its analogues) with benzene-1,4-diboronic acid exclusively and efficiently forms the desired [4 + 4] macrocycle, as confirmed by both crystallography and mass spectrometry.
To evaluate the overall structure of the architectures, single crystal XRD studies were conducted. Crystals of macrocycle [2 + 2]BiPh were grown from slow diffusion of pentane into a solution of the macrocycle in chloroform. The packing arrangement involved macrocyclic units associating through offset π–π stacking44 (see SI for details). The crystal structure presented a remarkable arrangement, with the macrocycles forming extended, potentially porous, channels through the crystal lattice. Macrocycle [2 + 2]Py was thought to be suitable for inclusion of electron poor aromatic species and when a solution of 3,6-dinitro-1,8-naphthalimide was mixed with the macrocycle a vivid colour change was observed (Scheme 4, see SI for details).
:
2) gave a white powder in low yield (25%). Analysis of the isolated material by 1H NMR spectroscopy revealed a remarkable spectrum, with four ester environments (δ = 3.61, 3.77, 3.78, and 3.87 ppm) rather than the two expected for a C3 symmetric species, and a noticeable “doubling” of several additional resonances assigned to the framework. The material was amenable to analysis by ESI-HRMS, and the mass obtained was in excellent agreement with the proposed [3 + 2] cage (see SI for details). While suitable single crystals could not be grown for structural analysis, AM1 molecular modelling (see SI for full details) provided insight into the possible structural arrangement and the poor yield. The likely cause of the desymmetrisation appeared to be steric interactions between the methyl ester substituents on either side of the cage aperture (Fig. 3B), leading to a twisting of the entire norbornane scaffold to minimise steric interactions. The twisting leads to a scenario where esters on one side of the framework sit slightly inside the central cavity (endohedral) and the esters of the other side are oriented exohedrally. The two environments give rise to the observed doubling of signals.
An extended cage compound [3 + 2]TZ was efficiently accessed from reaction of 180° tecton 4 with triazine triphenyl triboronic acid (96%). Of interest 1H NMR analysis of the extended cage provided a 1H NMR spectrum with resonances in line with the expected C3 and σV symmetric cage—again suggesting that steric issues were responsible for the lesser symmetry of cage [3 + 2]Ph. A 1H diffusion spectrum of [3 + 2]TZ was obtained and a diffusion coefficient of 3.16 × 10−10 m2 s−1 was derived. Using the Stokes–Einstein equation, the spherical radius of cage [3 + 2]TZ was calculated as 11.42 ± 0.12 Å, in excellent agreement with the expected size of the [3 + 2] molecular cage (see SI for full details).
Single crystals of cage [3 + 2]TZ were grown from slow diffusion of hexane into a solution of [3 + 2]TZ in chloroform. The needle crystals were amenable to analysis by SC-XRD. The overall packing of the cage along the ac plane relies on weak van der Waals forces between the windows of each cage (Fig. 3D), while along the b axis the triazine components of the cages stacked cofacially.
:
MeOD (1
:
1) with acetic acid (final AcOH conc. 2.92 mM) and analysed using both 1H NMR spectroscopy and nESI-HRMS. Over a 24-hour period no change in the sample was observed by 1H NMR spectroscopy, and key resonances (Ar–H singlet δ = 7.75 ppm and CHOB δ = 5.21 ppm) remained present, indicating that the macrocycle was intact (Fig. 4B). Similarly, after 24 hours, analysis by nESI-HRMS clearly showed the presence of the intact macrocycle ([4 + 4]DEG (Fig. 4C, m/z 1023.47)).
Repeating the experiment with trifluoroacetic acid, a solution of the macrocycle [4 + 4]DEG was prepared in (1
:
1) CDCl3
:
MeOD with trifluoroacetic acid (final TFA conc. 2.18 mM). After 24 hours, a very small resonance was noted in the 1H NMR spectrum at δ = 7.70 ppm that may suggest a degree of hydrolysis to a free boronic acid, however, the diagnostic CHOH resonance (δ = 4.41 ppm) that would confirm disassembly was not apparent. Reassuringly, the key resonances of the macrocycle (phenyl singlet δ = 7.75 ppm and CHOB δ = 5.21 ppm) remained consistent, giving a strong indication that the macrocycle was intact. Analysis by means of nESI-HRMS was significantly complicated by the use of trifluoroacetic acid45 and addition of sodium chloride was required to reduce analyte ion pairing and obtain a signal. As such, a significantly noisier spectrum was obtained that included multiple protonated/sodiated/hydrated species. Despite this, a signal coresponding to the [[4 + 4]DEG + 4H]4+ ion was detected (m/z 1023.47) with the characteristic isotope pattern of the boronic ester assembly, giving further confirmation that the macrocycle was at least partially intact. Similarly an additional signal could be assigned to [[4 + 4]DEG + 3H + Na]4+ ion (Fig. 4, m/z 1029.20). Again, no signals corresponding to the expected hydrolysis products were noted (see SI for full details).
Similarly, using solely 1H NMR spectroscopy, the hydrolytic stability of [1 + 2]Ph, [4 + 4]Me, [2 + 2]BiPh and [3 + 2]TZ cage were evaluated in the presence of both AcOH and TFA (in 35% to 50% MeOD/CDCl3 subject to solubility, see SI for full details) and in each case no signals corresponding to hydrolysis products were observed after 24 hours. In comparison to the sterically protected [12 + 8] cage reported by Beuerle (Fig. 1),15 the results here indicate that the norbornane boronic ester linkage also possesses remarkable hydrolytic stability without the need to functionalise the boronic acid component. Indeed, the stability to MeOH/TFA place this class of compounds as amongst the most hydrolytically stable boronic ester assemblies that have been reported.
Supplementary information (SI): characterisation details (1H, 13C NMR spectra, crystallographic parameters) and full experimental procedures for the synthesis of all compounds are available in the supporting information. Additional hydrolysis experiments and X-ray crystallographic details are also available in the supporting information. See DOI: https://doi.org/10.1039/d5sc08385k.
Footnote |
| † The stability of boronic esters is based on many factors that include (i) the surrounding steric environment (ii) the ring size of the boronic ester, and (iii) electron density at the boron atom, a property influenced by both the nature of the aryl group (for phenylboronic acids) and also the electron donating propensity of the diol component.46 While boronic esters derived from bicyclo[2.2.2]octane diols have not been explicitly tested for hydrolytic stability, they may also prove to be highly robust. |
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