Anthony J.
Metrano
*a,
Lucas A.
Morrill
*a,
Gayathri
Bommakanti
a,
Robert
Casella
b,
Steve
Cook
b,
Randolph A.
Escobar
a,
Kathryn A.
Giblin
c,
Eric
Gosselin
a,
Tyler
Grebe
a,
Niresh
Hariparsad
a,
Rachel
Howells
c,
Gillian M.
Lamont
c,
Deanna A.
Mele
a,
Alexander
Pflug
d,
Theresa A.
Proia
a,
Hadi
Rezaei
a,
Magdalena
Richter
d,
Ryan
Richards
a,
Maryann
San Martin
a,
Marianne
Schimpl
d,
Alwin G.
Schuller
a,
Li
Sha
a,
James E.
Sheppeck
II
a,
Kun
Song
a,
Haoran
Tang
d,
David J.
Wagner
a,
Jianyan
Wang
b,
Allan
Wu
e,
Dedong
Wu
b,
Ye
Wu
a,
Kevin
Xu
a,
Minwei
Ye
a,
Jason D.
Shields
a and
Neil P.
Grimster
a
aOncology R&D, AstraZeneca, Waltham, MA 02451, USA. E-mail: anthony.metrano@astrazeneca.com; lucas.morrill@astrazeneca.com
bAdvanced Drug Delivery, Pharmaceutical Sciences, R&D, AstraZeneca, Waltham, MA 02451, USA
cOncology R&D, AstraZeneca, Cambridge CB2 0AA, UK
dDiscovery Sciences, R&D, AstraZeneca, Cambridge CB2 0AA, UK
eDiscovery Sciences, R&D, AstraZeneca, Waltham, MA 02451, USA
First published on 27th May 2025
Hematopoietic progenitor kinase 1 (HPK1) is a negative regulator of T-cell signaling. Inhibition of HPK1 with small molecules has been shown to reinvigorate the immune system toward fighting tumours in preclinical models, thus it holds promise as a therapeutic strategy in cancer immunotherapy. Herein we report a series of pyrazine carboxamide pyrazoles as selective inhibitors of HPK1. Key to our approach was the development of late-stage functionalisation chemistry which allowed for rapid SAR generation. Through these efforts, we discovered difluoroethyl pyrazole 16a, an in vivo tool which elicited the desired pharmacodynamic response in mice. Further, we describe the optimization of synthetic chemistry which could support preclinical studies of a member of this series of substituted pyrazoles.
Recently there have been numerous reports of tools validating this therapeutic approach in animal models, and several companies have progressed assets into the clinic.14–49 Notable examples of HPK1 inhibitors (1–4)19,37,48,49 from the literature are shown in Fig. 1a. The genesis of our medicinal chemistry program has been described recently.50 Two advanced compounds are shown in Fig. 1b. As previously noted, the utilization of the C3 methyl pyrazole (5 and 6) in the solvent channel of the HPK1 ATP binding site imparted significant selectivity gains against kinases within the MAPK family. In addition, the change to cyclopropyl at the 5-position of the pyrazine core improved the solubility of compound 6 compared to its methylamino analogue 5 (50 μM vs. 13 μM in simulated fed state intestinal fluid).
With compound 6 in hand, we recognized that compounds bearing both the methylated pyrazole and cyclopropyl group should be both selective and more soluble, thus addressing two of the key challenges in this series. Based on the X-ray co-crystal structure of 5 with HPK1 in Fig. 1b (inset), we hypothesized there was space for growth off N1 of the pyrazole. Building off that position would give us the chance to improve potency through interactions with Asp101, push on the p-loop of HPK1 to improve selectivity, and further tune physicochemical properties. Herein, we detail the development of synthetic chemistry that enabled the late-stage functionalization of intermediate 7, the evaluation of an advanced lead which was discovered through this chemistry manifold, and the route development which enabled the large-scale delivery of these methylated pyrazole HPK1 inhibitors (Fig. 1c).
Intermediate 7 was synthesized in six steps from commercially available pyrazine dichloride 10 (Scheme 2). Regioselective Suzuki–Miyaura cross-coupling of the C5-chloride delivered 11 in good yield. Sandmeyer fluorination followed by SNAr with SEM-protected aminopyrazole 12 (as a mixture of pyrazole regioisomers) provided 13, which was carried crude into another Suzuki–Miyaura cross-coupling with diethanolamine boronate ester (BDEA)5314 to deliver 15 in 58% yield over three steps. Lastly, aminolysis of the methyl ester followed by SEM cleavage in a two-step, one-pot procedure provided 7·HCl in 96% yield. This efficient route allowed us to rapidly generate gram quantities of 7 in five linear synthetic steps with an overall yield of 37%.
With 7 in hand and after some modest optimization, we identified mild, basic conditions that allowed us to diversify the pyrazole scaffold through four different reaction types (Fig. 2). Direct alkylation with primary and secondary alkyl (pseudo)-halides furnished over 60 analogues 16 with yields ranging from 17–90% and rr values ranging from 1:
1 to 3
:
1. Additionally, SNAr with 2-fluoropyridine delivered N1-arylated 17 in modest yield and rr, while 1,4-addition to α,β-unsaturated electrophiles was exploited to access two compounds 18, also in good yields and rrs. Lastly, we envisaged that epoxide opening could provide compounds with differentiated solubility properties owing to the pendent alcohol in products 19. As such, we utilized this late-stage approach to generate eight analogues in moderate to good yields and regioselectivities by reaction with both linear substituted and bicyclic epoxides. All these transformations were generally found to exhibit clean reaction profiles in which the pyrazole was selectively functionalized over other reactive sites, though in some cases, carboxamide functionalization was detected in low quantities. Moreover, pyrazole regioselectivity was confirmed in each reaction paradigm by 1H-1H ROESY experiments, in which the key nOes between the pyrazole aryl C–H and alkyl C–H signals on the nascent substituent were observed in the N1 regioisomer. The desired N1-regiosiomer was often found to be major, albeit modestly. Regioisomers were most commonly separated using SFC with a chiral stationary phase, though flash chromatography could be used to separate them in some instances.
This late-stage pyrazole functionalization was a highly efficient way to quickly generate 74 diverse analogues, allowing us to rapidly evaluate the SAR around pyrazole N1-substitution and test our design hypotheses. Alkylation provided the largest set of pyrazole compounds for biological testing, several of which are detailed in Table 1. As a reference, N1-methylated pyrazole 6 provided important improvements in solubility and selectivity compared to compound 5 (Fig. 1b). Selectivity, in particular, has been a challenge across a number of HPK1 programs, as inhibition of off-target kinases can have an antagonistic effect on T-cell signaling,54–56 thus cancelling out the effects of HPK1 inhibition. Methyl pyrazole 6 showed good potency both in a biochemical ADP-Glo assay measuring HPK1 inhibition and an assay in primary human T-cells measuring increases in IL-2 secretion. At the highest concentrations of the assay in primary human T-cells, 6 showed some decreases in IL-2 secretion. Additionally, despite significant improvements, 6 carried a risk for poor absorption at higher doses. Thus, we hoped our late-stage alkylation approach would reveal compounds with improved profiles. Indeed, N1-difluoroethyl pyrazole 16a, which was designed to push on the flexible p-loop of HPK1,22 improved selectivity versus LCK, maintained excellent potency, and improved stability in HLM. As a result, it was profiled further as an in vivo tool to understand pharmacokinetic/pharmaco-dynamic relationships.
Compound | R | HPK1 ADP-Glo IC50 (nM) | GLK ADP-Glo IC50 (nM) | LCK ADP-Glo IC50 (nM) | IL-2 EC50 (nM) | log![]() |
Aq. solubility (μM) | HLM (μl min−1 mg−1) |
---|---|---|---|---|---|---|---|---|
a The average of two runs: <3 nM and 5 nM. b The average of three runs: <3.0, 6.7, and 7.2 μL min−1 mg−1. | ||||||||
6 | Me | <3 | 91 | 5100 | 66 | 2.4 | 7.3 | <5.6b |
16a |
![]() |
<3 | 158 | 17![]() |
72 | 2.6 | 13 | <3.0 |
16b |
![]() |
<3 | 50 | 2200 | 101 | 2.1 | 51 | 13 |
16c |
![]() |
<4a | 321 | 13![]() |
139 | 1.9 | 31 | 248 |
16d |
![]() |
<3 | 137 | 3400 | 1980 | 1.3 | >1000 | 15 |
We also explored several other avenues to enhance solubility within the late-stage alkylation library. For example, oxetane 16b was envisioned to lower logD relative to 6 and 16a, while morpholine 16c was designed to test the effect of basic functionality. Pyrrolidinone 16d was intended to disrupt crystal packing. These strategies all worked with varying levels of success, the most impressive being the >100-fold solubility gain realized with pyrrolidinone 16d. Despite increases in solubility, 16b–d were notably less potent and therefore not explored further. Many other analogues were evaluated as part of the late-stage alkylation library, but unfortunately none were as compelling as those highlighted here.
While our most promising functionalized pyrazoles came from alkylation, we also accessed a wide range of chemical space through late-stage SNAr (17), conjugate addition (18), and epoxide opening reactions (19). Select analogues that we synthesized using those strategies are shown in Table 2. Pyridine 17 lost biochemical potency and was thus not tested in our T-cell assay. Nitrile 18—which was synthesized through conjugate addition after a failed attempt at direct alkylation with 3-bromopropionitrile—maintained potency and showed reasonable solubility at the expense of metabolic stability. Lastly, alcohols 19a–c displayed reasonable profiles but were neither as potent nor selective as our leads 6 or 16a.
Given that difluoroethyl pyrazole 16a showed good potency and selectivity with very little diminished IL-2 secretion at high concentrations in our T-cell assay (Fig. 3)—as well as good physicochemical properties—we intended to profile it further in a variety of safety and pharmacokinetic experiments. As such, more material was required. While late-stage alkylation of 7 was highly effective to deliver the initial quantities of this lead compound, we deemed that it would not be suitable for delivering larger batches, owing in large part to the need to separate the N1- and N2-alkylated pyrazole regioisomers by preparative SFC in the final step. For the next batch of 16a, we opted for the route shown in Scheme 3, beginning with the alkylation of nitropyrazole 20 on 5 g scale.51 Difluoroethyl 21 was isolated in 55% yield following regioisomer separation by chiral SFC. Hydrogenation of 21 furnished aminopyrazole 22, which was used directly in an SNAr reaction with fluoropyrazine 23, which was prepared from intermediate 11 using a Sandmeyer fluorination as shown in Scheme 2, to deliver 24 in 91% yield. Suzuki–Miyaura cross coupling with BDEA ester 14 provided 25, which was converted to carboxamide 16a in 66% yield over two steps.
Strategically, performing the alkylation and SFC separation early in the sequence was more efficient and less wasteful of our pyrazine- and azabenzimidazole-based intermediates, and it allowed us to rapidly deliver multi-gram quantities of 16a for additional profiling. However, preparative SFC was still required to efficiently separate the N1- and N2-pyrazole regioisomers. Moreover, we discovered through our work on related compounds50 that alkylated nitropyrazoles, like 21, are potentially explosive and therefore pose safety risks. To mitigate these key issues with an eye toward future larger-scale deliveries of 16a, we envisioned an alternate strategy involving a bespoke pyrazole synthesis. We hypothesized this could proceed via condensation of a hydrazine with an α,β-unsaturated β-keto ester that would be highly regioselective and therefore preclude the need for SFC (Scheme 4).57 We were able to demonstrate the reaction between 26 and difluoroethyl hydrazine 27 to deliver 28 in 62% yield and >20:
1 rr following ester saponification. Aminopyrazole 22 could then be accessed through a Curtius rearrangement/deprotection sequence that was exemplified for another lead compound in this series. Although we never exemplified this sequence to deliver large quantities of 16a, our previous publication50 shows that the approach is indeed viable for related N1-alkylated pyrazoles with high levels of regioselectivity on large scale.
Table 3 presents an overview of the safety and pharmacokinetic data acquired for 16a. The compound showed no liabilities in CYP reversible and time-dependent inhibition experiments and was also found to be clean in a series of ion channel inhibition assays. Furthermore, 16a had low intrinsic clearance in both human and rat hepatocytes. It was found to have high intrinsic permeability and a moderate efflux ratio, as assessed in separate Caco-2 assays. In vivo pharmacokinetic experiments were performed in rat and mouse. At low doses, reasonable absorption was observed in both species. Moderate clearance was observed, which was well-predicted by in vitro parameters, indicating that metabolism is primarily hepatic.
CYP panel IC50: 1A2, 2C9, 2C19, 2D6, 3A4 (μM) | >30 all |
CYP panel TDI: 1A2, 2C9, 2C19, 2D6, 3A4 (% inhibition) | <20 all |
Cardio panel IC50: hERG, NaV1.5, IKs, Ito Kv4.3 (μM) | >20 all |
Human Heps CLint [(μL min−1)/(106 cells)] | <1.0 |
Rat Heps CLint [(μL min−1)/(106 cells)] | 4.5 |
Human plasma protein binding (% free) | 7.2 |
Caco2 Papp (10−6 cm s−1) | 82 |
Caco2 efflux ratio | 14 |
Mouse PK: oral bioavailability (%)/CL (mL min−1 kg−1)/Vss (L kg−1)/t1/2 (h) | 14/23/0.80/2.6 |
Rat PK: oral bioavailability (%)/CL (mL min−1 kg−1)/Vss (L kg−1)/t1/2 (h) | 60/20/1.2/2.0 |
The feasibility of using 16a as a tool for in vivo PK/PD experiments was assessed through single dose pharmacokinetic experiments in mice. As shown in Fig. 4, 16a had favorable exposure at 30 mg kg−1. As such, the compound was taken forward into a single dose PK/PD study. Mice were given a single oral dose of 30 mg kg−1, and pSLP76 levels were measured at 2, 6, 16, and 24 hours. Maximal pSLP76 inhibition was observed 6 hours following oral dosing with sustained inhibition through the 24-hour time point. Having displayed a strong in vivo pharmacodynamic response, 16a was thus found to have the potential to serve as a tool for studying the effects of selective HPK1 inhibition.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5md00309a |
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