Sukanta
Das
and
Vaibhav S.
Prabhudesai
*
Tata Institute of Fundamental Research, Colaba, Mumbai 400005, India. E-mail: vaibhav@tifr.res.in
First published on 4th January 2024
Dissociative electron attachment (DEA) shows functional group-dependent site selectivity in H− ion channels. In this context, thiol functional groups have yet to be studied in great detail, although they carry importance in radiation damage studies where low-energy secondary electrons are known to induce damage through the DEA process. In this context, we report detailed measurements of absolute cross-sections and momentum images of various anion fragments formed in the DEA process in simple aliphatic thiols. We also compare the observed dynamics with that reported earlier in hydrogen sulphide, the precursor molecule for this functional group, and with that in aliphatic alcohols. Our findings show substantial resemblance in the underlying dynamics in these compounds and point to a possible generalisation of these features in the DEA to thiols. In addition, we identify various pathways that contribute to the S− and SH− channels.
On the other hand, a comparison of DEA to water and hydrogen sulphide (H2S) provides an interesting case to understand the intricate molecular dynamics followed by the negative ion resonances containing the OH and SH groups. For example, the two molecules show distinct resonances dissociating into the H− channel in DEA. These resonances are at 6.5, 8.5 and 12 eV in water13 and around 5.2, 7.5 and 9.6 eV in H2S.14 Both these molecules belong to the C2v symmetry group. As O and S atoms belong to the same group in the periodic table, these molecules are expected to show similar structures and dynamics. On the other hand, the O atom is more electronegative than the S atom, making it a stronger hydrogen bond participant. The negative ion resonances corresponding to the three peaks observed in the H− channel in DEA are 2B1, 2A1 and 2B2 states, which are core excited resonances. However, there are distinct differences in their dynamics as observed in the momentum imaging.14,15 The H− channel at the first resonance in water shows substantial internal excitation of the OH fragment, whereas in H2S, the SH fragment shows very little internal excitation. The angular distribution of the H− channel from the second resonance in water shows significant internal motion before dissociation, making it deviate from the expected angular distribution from the axial recoil motion.16,17 In contrast, in H2S, the angular distribution at the second resonance is in accordance with the axial recoil motion.14 More interestingly, the OH− ions are reported to be observed experimentally by Fedor et al.18 as the direct dissociation product from all three resonances, while theoretical calculations do not find this channel as a direct product in these resonances and attribute it to nonadiabatic effects.19 On the other hand, in DEA to H2S, SH− ions are reported at 2.4 eV.14,20 Interestingly, both simple alcohols21,22 and thiols12 have shown the production of OH− and SH− ions, respectively. Moreover, the systematic investigations on simple organic alcohols have shown the presence of an H− channel at around 6.5 eV that arises from the hydroxyl group and shows strong functional group dependence.4 However, at 6.5 eV resonance, using the momentum imaging technique, it was found that the corresponding angular distribution of the H− channel is substantially different from that reported for H− from water at 6.5 eV despite a similar resonance state playing a role in the reaction. The difference in the angular distribution has been explained as due to the torsional modes of vibrations active at room temperature.6,8 These vibrational excitations have a substantial influence on the angular distribution. In light of these observations, it would be interesting to explore the similar functional group dependence of the DEA process in thiol groups.
Ibănescu and Allan have reported CH3CH2S−, CH3CHS−, SH−, and S− fragments from DEA to ethanethiol.12 CH3CHS− shows two peaks at 0.61 eV and 1.66 eV, CH3CH2S− shows a peak at 1.83 eV, and all these peaks are assigned as shape resonance. While SH−peaks at 8.7 eV and S− at 8.1 eV, they are inferred to arise from core excited Feshbach resonances.
Here, we report the detailed investigation of the DEA process in simple thiols, namely, ethanethiol and 1-butanethiol. Also, taking the cue from the H2S, we expect the thiol group-containing compounds to follow the axial recoil motion, throwing more light on the underlying DEA dynamics. In this work, we have obtained the resonance position of different fragments from ethanethiol and 1-butanethiol, calculated their kinetic energy (KE) and angular distribution from the momentum images taken using the velocity slice imaging (VSI) technique and compared them with those of the H2S and ethanol, especially at the 6.5 eV channel of ethanol. We have also found an energetic S−/SH− channel. This channel is important in atmospheric chemistry, particularly in its sulphur budget from organic mercaptans.23
Ion species | Ethanethiol | 1-Butanethiol | ||
---|---|---|---|---|
Electron energy (eV) | Absolute cross-section (× 10−19 cm2) | Electron energy (eV) | Absolute cross-section (× 10−20 cm2) | |
H− | 5 | 3.39 ± 0.40 | 5 | 8.23 ± 0.87 |
7 | 2.17 ± 0.22 | 7 | 7.88 ± 0.83 | |
8.2 | 2.55 ± 0.26 | 7.8 | 8.67 ± 0.90 | |
S− + SH− | 8.2 | 0.96 ± 0.10 | 7.6 | 6.59 ± 0.67 |
(M − 1)− | 2.2 | 0.77 ± 0.08 | 1.8 | 7.56 ± 0.77 |
Unlike H2S, neither of the thiol molecules shows any resonance in the S−/SH− channels at low electron energy. These channels peak around 8.2 eV for ethanethiol and 7.6 eV for 1-butanethiol, with the absolute cross-section of 9.6 × 10−20 cm2 and 6.59 × 10−20 cm2, respectively (Table 1). These values are lower by a factor of about 20 as compared to H2S.28 The (M − 1)− ion signal peaks around 2.2 eV and 1.8 eV for ethanethiol and 1-butanethiol with the absolute cross-section of 7.7 × 10−20 cm2 and 7.59 × 10−20 cm2, respectively (Table 1).
We have obtained the momentum images of all these channels at various electron energies using the VSI technique. We deduced the KE and angular distributions for these channels from the offline data analysis of these momentum images. Below, we provide details of these distributions for each channel and describe the inferred molecular dynamics behind these dissociation channels.
Due to the presence of an electron-beam-collimating transverse magnetic field, the ion images are deflected away from the axis of the spectrometer. This deviation is maximum for the lightest H− ions. It causes the distortion of the half of the image (the left half in this case) that results from the ion trajectories passing closer to the electrodes’ aperture edges.29 As the DEA process has azimuthal symmetry about the electron beam, the momentum image is expected to show the left-right symmetry. For the KE and angular distribution estimation, we have used only the right half of the image, measured close to the detector axis. We have used this part of the image to determine the centre of the distribution and carried out further analysis. The KE distributions obtained for this channel from both the molecules at various electron energies are shown in Fig. 3.
As mentioned earlier, the first two peaks in the ion–yield curve, at 5 eV and 7 eV, are consistent with those observed in the H2S, the precursor molecule of the thiol (–SH) functional group. Based on the earlier work on the functional group-dependent site-selective fragmentation, we conclude that these two peaks arise exclusively from the S–H site of the molecules.
The threshold for obtaining this ion in a two-body break-up from the parent molecule can be determined using the heat of formation for various components. Taking the heat of formation (ΔHf) for C2H5SH as −46 kJ mol−1,30 C2H5S as 104 kJ mol−1,31 and H as 218 kJ mol−1 and taking the electron affinity (E.A.) of H as 73 kJ mol−1, we get 295 kJ mol−1 or 2.97 eV as the minimum electron energy required to obtain this ion in DEA to ethanethiol. For 1-butanethiol with the ΔHf of 1-C4H9SH as −87.9 kJ mol−1 and that for 1-C4H9S as 54.4 kJ mol−1,32 we get the threshold energy for the H− channel as 2.98 eV. Hence, the excess energy in the system would be 2.03 eV (2.02 eV) for ethanethiol (1-butanethiol) for the 5 eV electron. As H− is the lightest fragment, in the axial recoil motion, most of the excess energy will show up as its KE. The KE distribution peaks around 1.75 eV for this channel at 5 eV electron energy for both molecules, indicating fast dissociation. Although for 5 eV electron energy, the maximum expected KE of H− is 2 eV, the KE distribution shows a spread up to 2.5 eV. We attribute it to the electron beam's poor energy resolution (about 0.8 eV). For the 7 eV resonance as well, the KE distribution of H− has a peak between 3.5 and 3.75 eV, which is consistent with the fast two-body break-up scenario.
The angular distribution of H− at 5 eV has two distinct features (Fig. 4(a)). The angular distribution peaks around 90°–100°, dips close to 130° and then again rises close to 180°. The 100° peak matches fairly well with the angular distribution obtained for H− from H2S at 5 eV14 with one significant difference. The H− angular distribution for H2S becomes extremely small in the forward and backward direction with respect to the incoming electron beam, which is not the case with either of the thiol molecules. However, in this context, it resembles the angular distribution obtained for the first resonance in this channel in ethanol.8 In H2S, similar to water, the 5.5 eV resonance is understood to be the core excited resonance, with a significant contribution coming from the excitation of the lone pair of electrons from the sulphur atom to the 6a1 orbital with the incoming electron getting captured in it. This makes the resonant state a 2B1 state, and the H− angular distribution resembles that of water with zero intensity in the forward and backward directions,33i.e., no electron capture along the symmetry plane of the H2S leads to this channel. However, the presence of the DEA signal in the forward and backward direction in alcohols8 has been identified as the contribution of the torsionally excited molecules. The torsional modes break the planner symmetry of the alcohols (C–H–O plane) and make the capture along the symmetry plane possible, which leads to an enhanced signal in the forward–backward direction with respect to the electron beam.6 Similarly, we attribute the signal in the forward and backward direction from alkyl thiols to the torsionally excited molecules. The major difference between the angular distribution from ethanol and ethanethiol is that the contribution in the backward direction in the latter is far lower than that in the former. Moreover, the signal in the forward direction shows the reverse trend. This points to the possibility of differences in the dynamics of the torsionally excited molecules in both species on electron attachment. Interestingly, the spread in the KE distribution in both ethanol and ethanethiol is comparable, unlike in water and H2S, showing similarity in the overall dynamics followed by the anions formed by electron attachment to the ground state molecules. Another point to note is that the angular distribution observed in 1-butanethiol is similar to that observed for ethanethiol. The increase observed in the signal in the backward direction from methanol6 to ethanol8 is not observed in the ethanethiol and 1-butanethiol, although the number of torsional degrees of freedom increases, and their frequency decreases.
Compared with the first resonance, the second resonance in ethanethiol shows a substantially different angular distribution compared to ethanol. The angular distribution obtained at 7 eV electron energy for the H− channel with the KE of H− in the range of 3 to 4.2 eV (20 to 24 a.u. momentum) (Fig. 4(b)) resembles that obtained for the second resonance in this channel in H2S. In water, this resonance shows substantial internal dynamics.16,17 Similar internal dynamics also result in the second resonance in ethanol, which is reflected in a more smeared angular distribution with reduced anisotropy.8 However, H2S shows very little internal dynamics, resulting in the angular distribution following the expected pattern from the axial recoil approximation.14 Comparing the angular distribution for the second resonance in ethanethiol with ethanol and hydrogen sulphide, we conclude that this resonance also follows the axil recoil motion in the dissociation process. For 1-butanethiol, this resonance shows similar dynamics to that of ethanethiol.
The momentum image at the third peak at around 8 eV shows an annular distribution in the momentum range of 5 to 10 a.u. (Fig. 2(c)) along with a non-negligible signal at lower energies (momentum <5 a.u.) (Fig. 2(c)) for ethanethiol. This low-energy feature clearly appears as a blob in the case of 1-butanethiol (Fig. 2(g)). The 8 eV peak is broad in the ion–yield curve, and its contribution at lower electron energies can be seen in the momentum image at 7 eV as the inner ring (Fig. 2(b), region between 5 and 10 a.u. momentum). The images taken at higher electron energies (10 eV for ethanethiol and 9 eV for 1-butanethiol) show a clearly enhanced signal close to zero KE. This indicates the presence of another resonance in this electron energy range. On comparison with the momentum images obtained for methanol34 and ethanol8 around these electron energies, we identify this feature arising from the C–H site in the molecule. This site breakage results from at least a three-body break-up mechanism, leaving very little KE with the fragment. It is also known that the resonance peak in the H− channel from alkanes shifts to the lower electron energies.35 This is consistent with the observation that this low-KE feature appears prominently in 1-butanethiol compared to ethanethiol in the momentum image at 8 eV.
The higher KE feature (peaking between 5 and 10 a.u. momentum) shows an almost isotropic distribution from 1-butanethiol, whereas ethanethiol shows slightly higher intensity in the forward direction compared to the backward direction with respect to the electron beam. Its angular distribution at 8 eV electron energy (in the KE range 0.45–0.9 eV (0.35–0.8 eV) for ethanethiol (1-butanethiol)) is shown in Fig. 4(c). The KE and the angular distribution suggest that the source of this channel is a two-body dissociation. However, for 8 eV electron energy, the excess energy for the two-body breakage path with both the fragments in the ground state is almost 5 eV. The observed KE ranges from 0 to 2 eV (Fig. 3(c)) and indicates that the excess energy with the molecular fragment (C2H5S) is in the range of 3 to 5 eV. However, this fragment has an absorption band with the band origin at around 2.9 eV. The corresponding excited state is identified as the B2A′′ state.36 This implies that the observed H− channel arises from the dissociation path.
e + C2H5SH → (C2H5SH−)* → C2H5S(B2A′′) + H− | (1) |
For 7 eV electron energy, the momentum image shows an annular pattern (spread in the momentum range of 30 to 70 a.u.) with an angular anisotropy, which appears to be on top of an isotropic distribution. The anisotropy increases at 8 eV. However, the distribution becomes slightly narrower and more intense. At 9 eV, the inner part of the image (<30 a.u. of momentum) gets filled, showing the production with low KE. We obtained the KE distribution from these images, and the results are shown in Fig. 6(a).
The KE distribution peaks between 0.5 and 0.75 eV for both 7 and 8 eV electron energies. As the ion signal at 7 eV is dominated by the S− ions, these ions are observed with some KE as well as anisotropy. Typically, there are three possibilities for getting these ions in DEA. The first one is from the concerted three-body dissociation, where two bonds are simultaneously broken.
e + C2H5SH → (C2H5SH−)* → C2H5 + S− + H | (2) |
The thermodynamic threshold for this channel would be 4.77 eV (ΔHf (C2H5) = 119 kJ mol−1, ΔHf (S) = 277 kJ mol−1, E.A. (S) = 2.07 eV).30 In this case, one of the fragments, the H atom, is likely to take away most of the excess energy in the system as its KE. Interestingly, this channel is observed in H2S at this electron energy.13 Understandably, the S− channel there shows very low KE release as the other fragments are H atoms. Hence, this channel may contribute to the low KE part of the image.
The other mode would be a two-body break-up after the rearrangement of the H atom from the SH site. This channel would be slow due to the H migration in the molecule.
e + C2H5SH → (C2H5SH−)* → C2H6 + S− | (3) |
The thermodynamic threshold for this channel is 0.47 eV (ΔHf (C2H6) = −84 kJ mol−1, ΔHf (S) = 277 kJ mol−1, E.A. (S) = 2.07 eV).30 Based on the amount of excess energy available in the system, this channel may contribute to the annular pattern. However, it requires substantial internal rearrangement; it is unlikely to show the anisotropy as seen in the momentum image.
The third channel of the formation of S− ions via a sequential dissociation, i.e., the formation of SH− ions followed by their further dissociation into S− ions.
e + C2H5SH → (C2H5SH−)* → C2H5 + (SH−)* | (4a) |
(SH−)* → S− + H | (4b) |
This is possible if the C2H5 radical is formed in the electronic ground state and SH− ions are formed in their dissociating part of an excited state. Based on the heat of formation of fragments (ΔHf (SH) = 139 kJ mol−1) and electron affinity of SH (E.A.(SH) = 2.3 eV), we estimate the dissociation energy of the SH− ion to be 3.92 eV. This implies that the minimum electron energy required to obtain the S− ions by this channel is 4.77 eV. However, the first step (4a) would have at most 2.23 eV as the KE for 7 eV electron energy. This implies that the maximum KE of the (SH−)* would be 1.04 eV. In this case, the S− ions would have very little KE in the centre of mass frame of the SH− ions. The corresponding linear momentum of SH− ion would be passed on to the S− ion formed in its centre of mass frame. This makes the maximum KE of the S− ion in this channel to be 1.07 eV. This is consistent with the observed KE distribution. Moreover, the angular distribution of the S− ions would be that of the SH− ions, explaining the observed anisotropy. In the absence of the SH− signal at 7 eV, we attribute the observed S− signal to this channel. It is worth noting that in H2S as well, only S− and no SH− were observed at this electron energy.20
At 8 eV, we also see the SH− ions with almost the same intensity as that of S− ions. However, we do not see a substantial change in the KE distribution, whereas the anisotropy increases compared to the 7 eV image.
The SH− channel in ethanethiol can result from either a two-body or a three-body break-up. The possible reaction paths are
e + C2H5SH → (C2H5SH−)* → C2H5 + SH− | (5) |
e + C2H5SH → (C2H5SH−)* → CH3 + CH2 + SH− | (6) |
The threshold for the path (5) is 0.85 eV. Similarly, for path (6) (ΔHf (CH3) = 145 kJ mol−1, ΔHf (CH2) = 386 kJ mol−1), we have obtained the threshold as 5.13 eV. There can be other three-body break-up paths where one of the fragments in the concerted break-up can be an H atom. However, in such cases, most of the excess energy will be carried by the H atom, the lightest fragment. As the KE distribution peaks at about 0.75 eV with a well-defined relatively narrow spread, we rule out any such concerted break-up mechanism resulting in this fragment at this electron energy. Moreover, from path (6), the KE distribution of the SH− fragment would also be spread from zero KE. Also, it may not show the anisotropy obtained in the momentum image. Hence, we conclude that this concerted break-up mechanism is contributing very little to the signal. At 8 eV electron energy, in the path (5), the excess energy available to the system is 7.15 eV. However, the C2H5 radical can also be electronically excited. Two electronic excited states of this radical are identified in the UV absorption spectra at 5.03 and 6.05 eV.37,38 This would provide the following additional dissociation paths for the resonance state:
e + C2H5SH → (C2H5SH−)* → C2H5(3s) + SH− | (7) |
e + C2H5SH → (C2H5SH−)* → C2H5(3p) + SH− | (8) |
The momentum image obtained at 8 eV for the 1-butanethiol also shows an annular pattern similar to that for ethanethiol (Fig. 7). Similar excited states are also observed in secondary butyl radical.37 We assume that the primary butyl radical would also have similar states and attribute this channel in 1-butanethiol to such electronically excited butyl radical similar to ethanethiol. 1-Butanethiol also shows comparatively lower anisotropy, indicating the role of a higher number of degrees of freedom in delaying the initial dissociation process.
At 9 eV, the ion signal is dominated by the SH− ions (Fig. 5(f)), and the corresponding momentum image shows an increase in the low KE ion signal (Fig. 5(c) and 6(a)). This indicates that the contribution from the path (8) starts showing up with significant intensity. It also shows that this particular path also results in internal excitation of the C2H5 radical.
In ethanol, the OH− formation peaks around 9 eV, and it shows the H atom scrambling from the alkyl site.8 Interestingly, unlike S− from ethanethiol, no O− has been observed with high KE from DEA.8,22 These findings indicate differences in the properties of the underlying resonant states in alcohols and thiols.
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