Christophe A.
Ndamyabera
,
Nabanita
Chatterjee
,
Clive L.
Oliver
and
Susan A.
Bourne
*
Centre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa. E-mail: susan.bourne@uct.ac.za
First published on 21st September 2021
Two activated isostructural porous compounds, [Co(34pba)(44pba)]n (1d) and [Zn(34pba)(44pba)]n (2d) (where 34pba is 3-(pyridin-4-yl)benzoate, 44pba is 4-(pyridin-4-yl)benzoate, and d indicates the activated phase) were used for the adsorption of halogenated volatile organic compounds (VOCs), iodine, carbon dioxide (CO2), and hydrogen. Elucidation of single-crystal structures found that the desolvated phases 1d and 2d show rotational disorder of one ring on each linker. The crystal structure of {[Co(34pba)(44pba)]·1.6 I2}n (1dI2) was obtained by vapour sorption of iodine into 1d, and this could be desolvated to a phase isostructural with 1d. Thus the MOF is robust to cycling through sorption/desorption processes with an accompanying order/disorder phase transition. Activation energies for the desorption of dichloromethane, dibromomethane, and iodine were measured as 70, 60, and 77 kJ mol−1 respectively. Both activated compounds were tested as gas sorbents, with 1d showing higher adsorption capacity than 2d for both carbon dioxide and hydrogen.
We previously reported isomorphous MOFs in which the channel double-walls are formed by the related linkers 3-(pyridin-4-yl)benzoic acid (H34pba) and 4-(pyridin-4-yl)benzoic acid (H44pba), Scheme 1. These MOFs showed selective adsorption for the chlorinated VOCs dichloromethane, chloroform, and chlorobenzene.18 Guest molecules could be removed with the retention of the framework. To further understand the robustness of this framework through the sorption of additional halogenated compounds, we now consider the use of [Co(34pba)(44pba)]n (1d) and [Zn(34pba)(44pba)]n (2d) (where 34pba is 3-(pyridin-4-yl)benzoate, 44pba is 4-(pyridin-4-yl)benzoate, and d indicates the activated phase) as adsorbents for the bromo- and iodo-derivatives of the chloro-compounds studied previously. Furthermore, the sorption of iodine vapour, and of carbon dioxide and hydrogen gases by the same adsorbents is also presented here.
Powdered activated samples of mass 5–7 mg were placed in narrow glass vials. The latter were placed into larger vials containing the relevant VOC and then sealed to allow vapour sorption at room temperature (Fig. S1†). The VOCs selected for the study were dibromomethane (CH2Br2), bromoform (CHBr3), bromobenzene (BrBenz), diiodomethane (CH2I2), iodoform (CHI3), iodobenzene (IBenz). Code names for the corresponding phases from 1d and 2d are provided in Table 1. Samples were analysed after exposure for between one and fourteen days depending on the vapour pressure of the solvent.
Halogenated compound | Sorbent 1d | Sorbent 2d |
---|---|---|
Dibromomethane, CH2Br2 | 1dCH2Br2 | 2dCH2Br2 |
Bromoform, CHBr3 | 1dCHBr3 | 2dCHBr3 |
Bromobenzene, BrBenz | 1dBrBenz | 2dBrBenz |
Diiodomethane, CH2I2 | 1dCH2I2 | 2dCH2I2 |
Iodoform, CHI3 | 1dCHI3 | 2dCHI3 |
Iodobenzene, IBenz | 1dIBenz | 2dIBenz |
Iodine, I2 | 1dI2 | — |
The sorption for iodine in 1d was carried out in a similar way, using the sublimation of solid iodine to expose single crystals to iodine vapour, with samples taken after two hours, two days, eight days, and finally two weeks. Each sample was analyzed by thermogravimetry (TGA) to determine the mass loss owing to desorption of guests and by powder X-ray diffraction (PXRD) to identify changes in phase. A single crystal was selected for analysis and the structure reported as 1dI2. The desorption of iodine from 1dI2 was performed by soaking crystals of 1dI2 in methanol for three days, to recover the activated form (1dI2d). As this retained its crystallinity, the single crystal structure of 1dI2d is also reported here.
Gas sorption capacity of the 1d and 2d adsorbents was investigated for carbon dioxide (CO2) and hydrogen (H2) gases using a Micromeritics 3Flex Surface Area Analyzer. After grinding the sample, masses between 130–140 mg were prepared using a Micromeritics Flowprep using a flow of nitrogen over the samples for 2 h with continuous heating at 60 °C. Thereafter, samples were heated at 150 °C under vacuum for 2 h prior to the sorption analysis. The sorption for CO2 was carried out at various temperatures in order to determine the heat of adsorption (Qst), while the sorption capacity for H2 was only carried out at 77 K. Loading of gas into the samples was characterized by a pressure change from 0 mmHg to the maximum pressure equilibrium (between 600–1000 mmHg). The complete sorption corresponded to the equilibrium pressure which was followed by the desorption process.
Compound | 1 d | 2 d | 1 dI 2 | 1 dI 2 d |
---|---|---|---|---|
a 2 d was found to contain ca. 0.25 water molecules per Zn, which are disordered over five sites. | ||||
Formula | C24H16N2O4Co | C24H16N2O4Zn·0.25H2O | C24H16N2O4Co·1.6I2 | C24H16N2O4Co |
Formula mass (g mol−1) | 455.34 | 466.26 | 658.36 | 455.34 |
Crystal size (mm3) | 0.080 × 0.090 × 0.14 | 0.030 × 0.060 × 0.090 | 0.080 × 0.12 × 0.18 | 0.080 × 0.12 × 0.18 |
Crystal system | Monoclinic | Monoclinic | Monoclinic | Monoclinic |
Space group | P21/c | P21/c | P21/c | P21/c |
a (Å) | 10.3931(14) | 10.2197(5) | 10.114(3) | 10.4014(11) |
b (Å) | 16.027(2) | 16.1263(8) | 16.501(4) | 16.1330(17) |
c (Å) | 14.996(2) | 14.8826(7) | 14.700(4) | 14.6878(15) |
β (°) | 98.243(2) | 98.059(2) | 97.159(4) | 98.482(2) |
V (Å3) | 2472.2(6) | 2428.5(2) | 2434.3(11) | 2437.7(4) |
T (K) | 100(2) | 100(2) | 293(2) | 293(2) |
Z | 4 | 4 | 4 | 4 |
D c (g cm−3) | 1.223 | 1.275 | 1.796 | 1.241 |
μ (Mo-Kα) (mm−1) | 0.722 | 1.042 | 2.766 | 0.733 |
F(000) | 932 | 954 | 1271 | 932 |
Range scanned, θ (°) | 1.870–27.963 | 2.526–28.318 | 2.029–26.425 | 1.886–25.043 |
No. reflections collected | 22903 | 139665 | 18540 | 13599 |
No. unique reflections | 5889 | 6052 | 4970 | 4301 |
No. reflections with I ≥ 2σ(I) | 3893 | 4793 | 3691 | 3067 |
Parameters/restraints | 335/0 | 354/0 | 334/3 | 358/0 |
Goodness of fit, S | 1.042 | 1.031 | 1.110 | 1.031 |
Final R indices (I ≥ 2σ(I)) | R 1 = 0.0655 | R 1 = 0.0518 | R 1 = 0.0687 | R 1 = 0.0430 |
wR2 = 0.1677 | wR2 = 0.1329 | wR2 = 0.1838 | wR2 = 0.0959 | |
Final R indices (all data) | R 1 = 0.1085 | R 1 = 0.0715 | R 1 = 0.0934 | R 1 = 0.0749 |
wR2 = 0.1878 | wR2 = 0.1459 | wR2 = 0.1956 | wR2 = 0.1071 | |
Min, max e− density/(e Å−3) | 0.697, −0.585 | 0.608, −0.546 | 2.179, −0.643 | 0.488, −0.361 |
Fig. 1 Channels in the structure of 1d run parallel to [100] and have an hour-glass shape (widest point ca. 8 Å, narrowest point ca. 3.5 Å). |
The volumes of the solvent-accessible voids in 1d and 2d were estimated using Mercury22 with a probe radius of 1.2 Å and a grid spacing of 0.2 Å. These were estimated as 481 Å3 (20%) per unit cell for 1d and 571 Å3 (24%) per unit cell for 2d. Results of the sorption experiments are presented in Table 3. The loading capacity values (Lc) were calculated from TGA analysis (Fig. S2†) using the crystallographically derived void volume and the liquid density of the corresponding solvent. We approximated the maximum loading capacity (MLc) for the empty frameworks using eqn (1):
MLc = (solvent accessible void volume)/(Z × molecular volume) | (1) |
(2) |
VOC | Experimental mass loss, TGA (%) | Temperature range of mass loss (°C) | Loading capacity, Lc (x in formula): {[M(34pba)(44pba)]·x solvent}n | MLc | % loading capacity |
---|---|---|---|---|---|
a Reported in ref. 18. | |||||
1 d | |||||
CH2Cl2a | 14.0 | 60–154 | 0.9 | 1.3 | 69 |
CH2Br2 | 23.1 | 70–200 | 0.8 | 1.2 | 67 |
CH2I2 | 33.3 | 70–260 | 0.8 | 1.0 | 80 |
CHCl3a | 17.1 | 118–285 | 0.8 | 1.0 | 80 |
CHBr3 | 19.2 | 91–236 | 0.4 | 1.0 | 40 |
CHI3 | 26.0 | 125–278 | 0.4 | 0.8 | 50 |
ClBenza | 13.0 | 87–264 | 0.6 | 0.8 | 75 |
BrBenz | 19.2 | 38–235 | 0.7 | 0.8 | 88 |
IBenz | 19.1 | 40–277 | 0.5 | 0.7 | 71 |
2 d | |||||
CH2Cl2a | 11.0 | 88–220 | 0.7 | 1.4 | 50 |
CH2Br2 | 23.0 | 78–266 | 0.8 | 1.2 | 67 |
CH2I2 | 10.0 | 87–290 | 0.2 | 1.1 | 18 |
CHCl3a | 13.3 | 110–232 | 0.6 | 1.1 | 55 |
CHBr3 | 12.7 | 109–233 | 0.3 | 1.0 | 30 |
CHI3 | 10.0 | 105–248 | 0.1 | 0.9 | 11 |
ClBenza | 11.0 | 61–252 | 0.5 | 0.9 | 55 |
BrBenz | 14.0 | 58–278 | 0.5 | 0.8 | 63 |
IBenz | 10.6 | 58–270 | 0.3 | 0.8 | 38 |
Single crystal data was obtainable for the inclusion of the chlorinated VOCs in Table 3 in the framework of 1d. These structures were previously reported18 and showed that the guest VOCs are included in the MOF channels and held in place by Cl⋯π and C–H⋯π interactions and by π⋯π interactions between chlorobenzene and the MOF walls (Fig. 3). The crystallographic information for these structures is reproduced in the ESI,† Table S1.
Fig. 3 Single crystal structures of chlorinated VOCs in 1d, from left to right 1dCH2Cl2, 1dCHCl3, 1dClBenz. Non-covalent interactions are shown with dotted lines.18 |
Unfortunately, single crystals could not be obtained for the remaining sorption products, but PXRD analysis confirms that only subtle changes in the frameworks are evident in all cases (Fig. S3†).
Fig. 4 TGA of iodine sorption by 1d at different time intervals. The maximum is reached after 8 days. |
The sorption process was characterized using PXRD where gradual changes of patterns up to eight days were observed, Fig. 5(top). Most notable is a gradual decrease in peak intensities at 8° and 15° while there was a gradual increase in the peak intensities at 9 and 22.5°. New peaks appear at 10.5 and 25°. These changes can be attributed to the interaction of iodine molecule and the channels of the 1d framework (see crystal structure of 1dI2 which is described below). The uptake of iodine could be followed visually (Fig. S4†).
Fig. 5 (top) Gradual phase changes related to the sorption of iodine in 1d to form 1dI2, (bottom) PXRD for iodine desorption from 1dI2 into methanol to form 1dI2d. |
The desorption of iodine from 1dI2 into methanol could be monitored by following the colour changes that occur at a constant temperature of 22 °C (Fig. 6). The PXRD (Fig. 5 bottom) indicates the robustness of the phase changes during the recovery of iodine into methanol.
The sorption of iodine by 1d was sufficiently slow that the crystal used retained its single crystallinity and allowed us to obtain a fully elucidated structure, 1dI2 (Table 2 and Fig. 7). In common with all previously reported structures in which the MOF contains guest molecules, the framework is perfectly ordered, and is isostructural with the structures in which the MOF contains dimethylformamide, dichloromethane, chloroform, or chlorobenzene. To quantify the amount of iodine present in 1dI2, we used the SQUEEZE routine in Platon23 to estimate the void size and number of electrons present. For 1dI2 this indicated solvent-accessible voids of 644 Å3 and 418 e−/unit cell, which corresponds to ca. 2 iodine molecules per [Co(34pba)(44pba)] unit (in good agreement with the TGA data). We were able to locate several disordered iodine molecules occupying the same cavity; these were modelled over three sites with total occupancy adding to 0.8 iodine molecules per [Co(34pba)(44pba)] unit. We note that residual electron density in the same area indicates the possibility of further iodine being present but we were unable to model this in a chemically meaningful way. For the iodine molecules we could model we can identify a number of non-covalent interactions of the form I⋯π and I⋯I between the iodine molecules and the channel walls and between iodine molecules themselves. These are shown in Fig. 7 and detailed in Table 4.
Atoms | Interatomic distance (Å) |
---|---|
I2–C4A | 3.566 |
I2–C5A | 3.628 |
I3–C9A | 3.604 |
I3–C10A | 3.636 |
I4–C4A | 3.533 |
I4–C5A | 3.460 |
I4–C6A | 3.662 |
I5–C5A | 3.820 |
I5–C6A | 3.625 |
I3–I5 | 3.875 |
After the desorption in methanol, a single crystal was analyzed, to give the crystal structure 1dI2d (Table 2). 1dI2d reverts to the same structure as 1d, with identical disorder re-appearing in the pyridyl rings of the 34pba linker and in the benzoic acid rings of 44pba. Thus this material can be taken through successive desolvation, sorption, and desolvation cycles without significant changes.
We are now able to compare the similar structures obtained for the [Co(34pba)(44pba)] MOF 1, which include six inclusion compounds and two desolvated compounds. As already reported, the compounds are isostructural, with no significant trends emerging in looking at unit cell parameters, though the b-axis shows the greatest variation, from 15.3 Å (in 1d) to 17.8 Å (in 1DMF). Conformational analysis shows that the rings of both linkers are close to co-planar for inclusion compounds where guests have larger molecular volumes and are more twisted when smaller guests (e.g. CH2Cl2) are included. When no guest is included (in 1d or 1dI2d) the rings have even greater flexibility. This is particularly pronounced for the pyridyl ring of 34pba in which the major component of the disordered ring is rotated by ca. 70°. We noted that the other disordered ring (on the 44pba) aligns with its major component in the same orientation as in 1dCH2Cl2 and its minor component aligning with the other solvated compounds. These features are illustrated in Fig. 8. The flexibility of the MOF is confirmed by an analysis of the void space available in each instance (Table S5†), which increases with solvent molecular volume. To confirm the robustness of the MOF an individual crystal was taken through several cycles of desorption and sorption, which showed consistent changes in unit cell parameters (Table S6†).
Fig. 8 Molecular overlays of the asymmetric unit for 1d (orange), 1dCH2Cl2 (blue), 1dCHCl3 (green), 1dClBenz (yellow), 1dI2 (purple). |
TGA can also be used to determine the activation energy (Ea) of guest desorption processes, and we have applied this here to the desorption of the related guests dichloromethane and dibromomethane from 1dCH2X2, as well as to the desorption of iodine from 1dI2. A series of isothermal TG curves were obtained for each compound at several temperatures just below the desorption temperature observed in Fig. S2.† Each desorption curve was then fitted against a range of plausible desorption mechanisms,24 and a rate constant (k) was determined at each temperature (Fig. S5†). An Arrhenius plot then gave the value of the activation energy for each desorption process. The conversion vs. time curves are shown in Fig. S6,† and the activation energies determined are given in Table 5. The kinetics of desorption for CH2Cl2, CH2Br2, and I2 all showed a best fit to the 3D diffusion model, which indicates that the guest molecules interact with the wall of the adsorbent in a spherical zone. The Ea of desorption of CH2Cl2 and CH2Br2 are approximately equal while that for iodine is higher, probably owing to the increased non-covalent interactions which iodine is capable of making with the channel walls.
Compound | E a (kJ mol−1) | R 2 Coeff |
---|---|---|
1 dCH 2 Cl 2 | 70 | 0.96 |
1 dCH 2 Br 2 | 60 | 0.97 |
1 dI 2 | 77 | 0.90 |
No | Sample | Volume adsorbed (cm3 g−1) | Pressure (mmHg) | Temperature (K) | Corresponding to (mmol g−1) |
---|---|---|---|---|---|
1 | 2 d | 52.0 | 676 | 195 | 2.40 |
1 d | 114 | 5.06 | |||
2 | 2 d | 22.4 | 784 | 273 | 1.00 |
1 d | 47.6 | 2.10 | |||
3 | 2 d | 21.7 | 803 | 278 | 1.00 |
1 d | 47.0 | 2.10 | |||
4 | 2 d | 19.7 | 910 | 288 | 0.90 |
1 d | 44.6 | 2.00 | |||
5 | 2 d | 18.8 | 900 | 293 | 0.84 |
1 d | 43.1 | 1.92 | |||
6 | 2 d | 17.7 | 910 | 298 | 0.80 |
1 d | 41.0 | 1.80 |
The trend of higher adsorption capacity in 1d compared to 2d was observed for solvent vapours including the halogenated VOCs reported here and the volatile amines reported in ref. 18, and may be the result of a slightly smaller void space in 1d than 2d. However, this attribution of adsorption capacity related to the size of pores has been controversial in other reported structures.26 An alternative explanation is that the smaller size of a solvent-accessible void volume causes stronger interactions between the guest and the framework, depending on their respective structures and functionalization. The determination of isosteric heat of adsorption (Qst) of CO2 showed that the sample 1d adsorbed between 0.8 mmol and 1.38 mmol with heats of adsorption (Qst) between 29.8 kJ and 30.3 kJ, while sample 2d adsorbed between 0.1 mmol and 0.4 mmol CO2 (Qst 28.5 kJ and 28.9 kJ). These results suggest that there is a higher interaction in 1d than in 2d.27 The uptake for hydrogen gas in 1d was 120 cm3 (STP) g−1 at 800 mmHg at 77 K corresponding to 2.44 molecules of H2 per ASU. In contrast, 2d did not adsorb hydrogen under the same conditions.
Inclusion of halogenated volatile organic compounds found that, for each series of VOCs studied, the uptake was generally higher for chlorinated over brominated and iodinated compounds. While only the chlorinated species CH2Cl2, CHCl3, and ClBenz afforded single crystal structures, TGA and PXRD analysis indicates that the type of interaction present in the Br- and I-derivatives are likely to be similar. On the other hand, the sorption of iodine into 1d could be followed in the powder form, and also afforded single crystals which are stabilized by I⋯π and I⋯I interactions. The desorption of iodine from 1dI2 gave 1dI2d whose structure was also fully elucidated, confirming that the desorption–sorption–desorption cycle proceeded without significant loss of crystallinity.
The isothermal kinetic desorption of I2, CH2Cl2, and CH2Br2 from 1d indicates that iodine requires more energy for the desorption in the range of the reported ones. The two adsorbents 1d and 2d were both capable of adsorption of carbon dioxide gas while only 1d adsorbed hydrogen. In general, across all types of vapour and gas sorption tested, the trend was for 1d to show stronger interactions and higher adsorption capacity. Further studies to determine the reasons for this observation are underway.
Footnote |
† Electronic supplementary information (ESI) available: Tables S1–S8, Fig. S1–S6. CCDC 2100689–2100692. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/d1ce01052b |
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