Themed collection Festschrift in honour of Juan de Pablo’s 60th birthday

23 items
Open Access Review Article

Toward understanding biomolecular materials comprising intrinsically disordered proteins via simulation and experiment

Different simulation approaches have been applied to understanding and predicting key features of the solution behavior of intrinsically disordered proteins.

Graphical abstract: Toward understanding biomolecular materials comprising intrinsically disordered proteins via simulation and experiment
From the themed collection: MSDE Open Access Spotlight
Review Article

Recent advances in 3D bioprinting of polysaccharide-based bioinks for fabrication of bioengineered tissues

Complex multilayered tissues have been regenerated by extrusion-based 3D bioprinting with biocompatible polymers. Multilayer fabrications with tissue-specific bioinks are possible by controlling gel properties including interaction between layers.

Graphical abstract: Recent advances in 3D bioprinting of polysaccharide-based bioinks for fabrication of bioengineered tissues
Open Access Paper

Engineering an indoleamine 2,3-dioxygenase immunotherapy via selective cysteine-to-serine mutations

Selective cysteine-to-serine mutations improves enzymatic stability and therapeutic efficacy of the immunomodulatory enzyme indoleamine 2,3-dioxygenase.

Graphical abstract: Engineering an indoleamine 2,3-dioxygenase immunotherapy via selective cysteine-to-serine mutations
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Accelerating multi-species field-theoretic simulations using Bayesian optimization

Field-theoretic simulations can be stabilized and accelerated through judiciously chosen relaxation coefficients. We demonstrate how these optimal coefficients can be obtained using Bayesian optimization.

Graphical abstract: Accelerating multi-species field-theoretic simulations using Bayesian optimization
From the themed collection: MSDE Open Access Spotlight
Paper

Design of shape morphing of liquid crystal elastomers through pre-shaping methods

Responsive shape-changing materials with driven and spontaneous transitions have wide applications in biological systems, soft robots, artificial muscles, and consumer products.

Graphical abstract: Design of shape morphing of liquid crystal elastomers through pre-shaping methods
Open Access Paper

Curved confinement directs anchoring-mediated structural transitions in highly chiral liquid crystal shells

This work reveals the intricate interplay between curvature, shell thickness, and anchoring asymmetry in governing structural transitions, dynamic behavior, and defect morphologies in highly chiral cholesteric liquid crystal shells.

Graphical abstract: Curved confinement directs anchoring-mediated structural transitions in highly chiral liquid crystal shells
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Computational investigation of the impact of metal–organic framework topology on hydrogen storage capacity

A topologically diverse MOF dataset, NU-topoMOF-2025, was constructed and screened to identify topology-based design rules for materials with enhanced hydrogen storage performance.

Graphical abstract: Computational investigation of the impact of metal–organic framework topology on hydrogen storage capacity
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Mesoscale modelling of polymer-mediated adhesion: application to tack tests

Computational models of polymer adhesion reveal how pulling speed, interfacial kinetics and detachment mechanisms influence performance.

Graphical abstract: Mesoscale modelling of polymer-mediated adhesion: application to tack tests
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Expediting field-effect transistor chemical sensor design with neuromorphic spiking graph neural networks

Improving the sensitive and selective detection of analytes in a variety of applications requires accelerating the rational design of field-effect transistor (FET) chemical sensors.

Graphical abstract: Expediting field-effect transistor chemical sensor design with neuromorphic spiking graph neural networks
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Investigating structural biophysical features for antigen-binding fragment crystallization via machine learning

Crystal-site and non-crystal-site residues in crystal interfaces are classified using machine learning and in silico modeling to identify key structural physicochemical features influencing fragment antigen-binding (Fab) crystallization.

Graphical abstract: Investigating structural biophysical features for antigen-binding fragment crystallization via machine learning
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

A bio-inspired approach to engineering water-responsive, mechanically-adaptive materials

This paper highlights a bioinspired approach to engineering water-responsive materials via a diverse array of self-assembled nanostructures.

Graphical abstract: A bio-inspired approach to engineering water-responsive, mechanically-adaptive materials
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Nanostructured liquid-crystalline ion conductors based on linear carbonate moieties: effects of oligooxyethylene and alkylene spacers on self-assembled properties and ionic conductivities

Ion-conductive 2D nanostructured liquid crystals containing linear carbonate moieties are developed. The complexes of these materials with lithium salts may have potential as self-assembled electrolytes in lithium-ion batteries.

Graphical abstract: Nanostructured liquid-crystalline ion conductors based on linear carbonate moieties: effects of oligooxyethylene and alkylene spacers on self-assembled properties and ionic conductivities
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Understanding stable adsorption states in flexible soft porous coordination polymers through free energy profiles

Soft porous coordination polymers show metastable states in volume while varying loading. The flexibility of the linkers affects the resulting configurations.

Graphical abstract: Understanding stable adsorption states in flexible soft porous coordination polymers through free energy profiles
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Accelerating multicomponent phase-coexistence calculations with physics-informed neural networks

We develop a physics-informed machine learning workflow that accelerates multicomponent phase-coexistence calculations on the number, composition, and abundance of phases. The workflow is demonstrated for systems described by Flory–Huggins theory.

Graphical abstract: Accelerating multicomponent phase-coexistence calculations with physics-informed neural networks
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

DORA-XGB: an improved enzymatic reaction feasibility classifier trained using a novel synthetic data approach

We outline a method for synthetically generating negative data by considering alternative reaction centers on small-molecule substrates that are known to participate in enzymatic reactions.

Graphical abstract: DORA-XGB: an improved enzymatic reaction feasibility classifier trained using a novel synthetic data approach
From the themed collection: MSDE Open Access Spotlight
Open Access Paper

Self-consistent field theory and coarse-grained molecular dynamics simulations of pentablock copolymer melt phase behavior

Using a combined theory-simulation approach we rapidly screen a large polymer design space to identify rules for desired morphologies as well as the chain conformations associated with the theory-predicted phase behavior.

Graphical abstract: Self-consistent field theory and coarse-grained molecular dynamics simulations of pentablock copolymer melt phase behavior
Open Access Paper

On the design of optimal computer experiments to model solvent effects on reaction kinetics

Model-based design of experiments using the D-optimality criterion can help select computer experiments to generate more information-rich training sets and leads to more reliable surrogate models that can be used for efficient molecular design.

Graphical abstract: On the design of optimal computer experiments to model solvent effects on reaction kinetics
Paper

Selective mineralization at hydrogel interface induced by fusion between peptide hydrogels

Biomineralization has garnered attention not only for its fundamental role in understanding the mechanisms of biomineral formation but also as a method for fabricating next-generation functional materials.

Graphical abstract: Selective mineralization at hydrogel interface induced by fusion between peptide hydrogels
Open Access Paper

Two conjectures on 3D Voronoi structures: a toolkit with biomedical case studies

Voronoi structures can model a wide variety of environments, but their unique design requirements hamper their efficient creation. This work introduces four, accurate equations, including two new conjectures that greatly increase this efficiency.

Graphical abstract: Two conjectures on 3D Voronoi structures: a toolkit with biomedical case studies
Paper

Boron subphthalocyanine axial groups: a comprehensive set for studying the tuning of photophysical and electrochemical properties

The notable impact of a wide array of axial groups on the quantum yield and electrochemical redox properties provides a guide for future design of BsubPcs and other macrocycles for organic electronic and other applications.

Graphical abstract: Boron subphthalocyanine axial groups: a comprehensive set for studying the tuning of photophysical and electrochemical properties
Paper

Tuning the photophysical properties of ESIPT active unsymmetrical azine dyes by the change in the substituent and solvent: TD-PBE0 and TD-CAM-B3LYP studies

The photophysical properties of the designed ESIPT active as well as donor–acceptor structured unsymmetrical azine dyes L1L5 were investigated at PBE0/6-31++G(d,p) and CAM-B3LYP/6-31++G(d,p) levels of theory in the gas phase and solvent media.

Graphical abstract: Tuning the photophysical properties of ESIPT active unsymmetrical azine dyes by the change in the substituent and solvent: TD-PBE0 and TD-CAM-B3LYP studies
Paper

Corrosion inhibitor screening for AA6014 aluminum alloy under different ambient conditions using a novel multielectrode methodology

A novel electrochemical cell to assess the effectiveness of organic corrosion inhibitors in preventing droplet corrosion for alloy AA6014. The study focuses on analysing the impact of pH and inhibitor chemical structure on their performance.

Graphical abstract: Corrosion inhibitor screening for AA6014 aluminum alloy under different ambient conditions using a novel multielectrode methodology
Paper

Mesoporous degradable chitosan-based monoliths: synthesis and applications toward water purification

A synthetic strategy is presented for the preparation of degradable chitosan based functional porous polymer monoliths with tunable surface area, which are capable to efficiently remove multiple pollutants from water.

Graphical abstract: Mesoporous degradable chitosan-based monoliths: synthesis and applications toward water purification
23 items

About this collection

MSDE are delighted to present this special themed collection in recognition of founding Editor-in-Chief Professor Juan de Pablo’s seminal contributions to the field of molecular engineering, and on the occasion of his 60th birthday. In celebration of Professor de Pablo’s important milestone, this Festschrift covers research contributions in the broad area of molecular engineering.

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