Structure elucidation of bacterial nonribosomal lipopeptides

Sebastian Götze and Pierre Stallforth

Org. Biomol. Chem., 2020, 18, 1710
DOI: 10.1039/C9OB02539A

The cytochalasans: potent fungal natural products with application from bench to bedside

Mohamed A. Tammam, Florbela Pereira, Elizabeth Skellam, Stefan Bidula, A. Ganesan and Amr El-Demerdash

Nat. Prod. Rep., 2025, 42, 788
DOI: 10.1039/D4NP00076E

Bacterial and Fungal Biocontrol Agents for Plant Disease Protection: Journey from Lab to Field, Current Status, Challenges, and Global Perspectives

Muhammad Ayaz, Cai-Hong Li, Qurban Ali, Wei Zhao, Yuan-Kai Chi, Muhammad Shafiq, Farman Ali, Xi-Yue Yu, Qing Yu, Jing-Tian Zhao, Jing-Wen Yu, Ren-De Qi and Wen-Kun Huang

Molecules, 2023, 28, 6735
DOI: 10.3390/molecules28186735

Solanimycin: Biosynthesis and Distribution of a New Antifungal Antibiotic Regulated by Two Quorum-Sensing Systems

Miguel A. Matilla, Rita E. Monson, Annabel Murphy, Muriel Schicketanz, Alison Rawlinson, Caia Duncan, Juan Mata, Finian Leeper, George P. C. Salmond and Vanessa Sperandio

mBio, 2022, 13
DOI: 10.1128/mbio.02472-22

Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion

Alberto Pascale, Silvia Proietti, Iakovos S. Pantelides and Ioannis A. Stringlis

Front. Plant Sci., 2020, 10
DOI: 10.3389/fpls.2019.01741

Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition

Alba Pacheco-Moreno, Francesca L Stefanato, Jonathan J Ford, Christine Trippel, Simon Uszkoreit, Laura Ferrafiat, Lucia Grenga, Ruth Dickens, Nathan Kelly, Alexander DH Kingdon, Liana Ambrosetti, Sergey A Nepogodiev, Kim C Findlay, Jitender Cheema, Martin Trick, Govind Chandra, Graham Tomalin, Jacob G Malone and Andrew W Truman

eLife, 2021, 10
DOI: 10.7554/eLife.71900

Understanding the biosynthesis, metabolic regulation, and anti-phytopathogen activity of 3,7-dihydroxytropolone in Pseudomonas spp.

Alaster D. Moffat, Lars Höing, Javier Santos-Aberturas, Tim Markwalder, Jacob G. Malone, Robin Teufel, Andrew W. Truman and Gerard D. Wright

mBio, 2024, 15
DOI: 10.1128/mbio.01022-24

Stomatal Movement Examination: A New Model to Reveal Interactions Between Grapevine and Phaeomoniella chlamydospora, an Esca-Associated Pathogen

Nasandratriniavo Fehizoro Rakotoniaina, Anaïs Vander Cruyssen, Ana Romeo-Oliván, Christian Chervin, Alban Jacques and Olivier Rodrigues

J Plant Growth Regul, 2025, 44, 4908
DOI: 10.1007/s00344-025-11700-z

Pathways to engineering the phyllosphere microbiome for sustainable crop production

Chengfang Zhan, Haruna Matsumoto, Yufei Liu and Mengcen Wang

Nat Food, 2022, 3, 997
DOI: 10.1038/s43016-022-00636-2

Bacterial auxin catabolism as a driver of plant growth promotion and rhizosphere colonization fitness

Amalia Roca, Juan Gorts and Miguel A. Matilla

Microbiological Research, 2026, 305, 128431
DOI: 10.1016/j.micres.2025.128431

Plant microbiome structure and benefits for sustainable agriculture

Lidiane Figueiredo Santos and Fabio Lopes Olivares

Current Plant Biology, 2021, 26, 100198
DOI: 10.1016/j.cpb.2021.100198

Gene cluster conservation identifies melanin and perylenequinone biosynthesis pathways in multiple plant pathogenic fungi

Malaika K. Ebert, Rebecca E. Spanner, Ronnie de Jonge, David J. Smith, Jason Holthusen, Gary A. Secor, Bart P. H. J. Thomma and Melvin D. Bolton

Environmental Microbiology, 2019, 21, 913
DOI: 10.1111/1462-2920.14475

The Plant Growth-Promoting Potential of Halotolerant Bacteria Is Not Phylogenetically Determined: Evidence from Two Bacillus megaterium Strains Isolated from Saline Soils Used to Grow Wheat

Sylia Ait Bessai, Joana Cruz, Pablo Carril, Juliana Melo, Margarida M. Santana, Abdul M. Mouazen, Cristina Cruz, Ajar Nath Yadav, Teresa Dias and El-hafid Nabti

Microorganisms, 2023, 11, 1687
DOI: 10.3390/microorganisms11071687

Harmonizing traditional and biotechnological approaches to engineer crop microbiomes: Enhancing resilience optimization

Muhammad Siddique Afridi, Abdul salam, Sher Ali, Sumaira, Willian César Terra, Baber Ali, Muhammad Atif Muneer and Gustavo Santoyo

Biocatalysis and Agricultural Biotechnology, 2024, 62, 103433
DOI: 10.1016/j.bcab.2024.103433

Antibacterial diketopiperazines from an endophytic fungus Bionectria sp. Y1085

Yin-He Yang, Da-Song Yang, Guo-Hong Li, Xue-Juan Pu, Ming-He Mo and Pei-Ji Zhao

J Antibiot, 2019, 72, 752
DOI: 10.1038/s41429-019-0209-5

Biosurfactant based formulation of Pseudomonas guariconensis LE3 with multifarious plant growth promoting traits controls charcoal rot disease in Helianthus annus

Ekta Khare and Naveen Kumar Arora

World J Microbiol Biotechnol, 2021, 37
DOI: 10.1007/s11274-021-03015-4

Beneficial microbes going underground of root immunity

Ke Yu, Corné M.J. Pieterse, Peter A.H.M. Bakker and Roeland L. Berendsen

Plant Cell & Environment, 2019, 42, 2860
DOI: 10.1111/pce.13632

Inter-organismal phytohormone networks in plant-microbe interactions

Masahito Nakano, Natsuki Omae and Kenichi Tsuda

Current Opinion in Plant Biology, 2022, 68, 102258
DOI: 10.1016/j.pbi.2022.102258

Secondary metabolites released by the rhizosphere bacteria Arthrobacter oxydans and Kocuria rosea enhance plant availability and soil–plant transfer of germanium (Ge) and rare earth elements (REEs)

Ringo Schwabe, Christine Dittrich, Julian Kadner, Christoph Helmut Rudi Senges, Julia Elisabeth Bandow, Dirk Tischler, Michael Schlömann, Gloria Levicán and Oliver Wiche

Chemosphere, 2021, 285, 131466
DOI: 10.1016/j.chemosphere.2021.131466

Biocontrol Activity of Three Pseudomonas in a Newly Assembled Collection of Phytophthora infestans Isolates

Mout De Vrieze, Ramona Gloor, Josep Massana Codina, Stefano Torriani, Katia Gindro, Floriane L’Haridon, Aurélien Bailly and Laure Weisskopf

Phytopathology®, 2019, 109, 1555
DOI: 10.1094/PHYTO-12-18-0487-R

Genome comparisons suggest an association between Ceratocystis host adaptations and effector clusters in unique transposable element families

Arista Fourie, Ronnie de Jonge, Magriet A. van der Nest, Tuan A. Duong, Michael J. Wingfield, Brenda D. Wingfield and Irene Barnes

Fungal Genetics and Biology, 2020, 143, 103433
DOI: 10.1016/j.fgb.2020.103433

Host-specific and tissue-dependent orchestration of microbiome community structure in traditional rice paddy ecosystems

Weijuan Huang, Sarah Gilbert, Alexander Poulev, Kenneth Acosta, Sarah Lebeis, Chunlin Long and Eric Lam

Plant Soil, 2020, 452, 379
DOI: 10.1007/s11104-020-04568-3

Metabolomics Insights into Chemical Convergence in Xanthomonas perforans and Metabolic Changes Following Treatment with the Small Molecule Carvacrol

Mustafa Ojonuba Jibrin, Qingchun Liu, Joy Guingab-Cagmat, Jeffrey B. Jones, Timothy J. Garrett and Shouan Zhang

Metabolites, 2021, 11, 879
DOI: 10.3390/metabo11120879

Comparative genomics of three rhizobacteria strains indicate functional complementarity for inoculum development

Nourelhouda Abdelkefi, Naima Sayahi, Hela Zouari-Mechichi, Moez Hanin and Tahar Mechichi

Rhizosphere, 2025, 36, 101184
DOI: 10.1016/j.rhisph.2025.101184

Rapid evolution of bacterial mutualism in the plant rhizosphere

Erqin Li, Ronnie de Jonge, Chen Liu, Henan Jiang, Ville-Petri Friman, Corné M. J. Pieterse, Peter A. H. M. Bakker and Alexandre Jousset

Nat Commun, 2021, 12
DOI: 10.1038/s41467-021-24005-y

An antibiotic produced by Pseudomonas fluorescens CFBP2392 with antifungal activity against Rhizoctonia solani

Nadia Riera, Danilo Davyt, Rosario Durán, Gregorio Iraola, Philippe Lemanceau and Natalia Bajsa

Front. Microbiol., 2023, 14
DOI: 10.3389/fmicb.2023.1286926

Microbial Consortia: Promising Probiotics as Plant Biostimulants for Sustainable Agriculture

Sheridan L. Woo and Olimpia Pepe

Front. Plant Sci., 2018, 9
DOI: 10.3389/fpls.2018.01801

Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica

Miriam Rico-Jiménez, Zulema Udaondo, Tino Krell, Miguel A. Matilla and Gilles P. van Wezel

mSystems, 2024, 9
DOI: 10.1128/msystems.00165-24

Unveiling the occurrence and role of Methylobacterium endophytes in olive trees: insights into potential interactions with Xylella fastidiosa subsp. pauca

Mariangela Carlucci, Pompea Gabriella Lucchese, Cinzia Benincasa, Rosa Nicoletti, Andrea Pacifico, Enzo Perri and Franco Nigro

Chem. Biol. Technol. Agric., 2025, 12
DOI: 10.1186/s40538-025-00770-6

Why do entomologists and plant pathologists approach trophic relationships so differently? Identifying biological distinctions to foster synthesis

Kenneth F. Raffa, Pierluigi Bonello and John L. Orrock

New Phytologist, 2020, 225, 609
DOI: 10.1111/nph.16181

Consortia-based microbial inoculants for sustaining agricultural activities

Shams Tabrez Khan

Applied Soil Ecology, 2022, 176, 104503
DOI: 10.1016/j.apsoil.2022.104503

Inhibitory Effect of Trichoderma longibrachiatum on Growth of Fusarium Species and Accumulation of Fumonisins

Ruiqing Zhu, Ying Li, María Viñas, Qing Kong, Manlin Xu, Xia Zhang, Xinying Song, Kang He and Zhiqing Guo

JoF, 2026, 12, 49
DOI: 10.3390/jof12010049

Exploring salicylic acid biosynthesis in Trichoderma spp. using an enhanced transformation approach

Siebe Pierson, Erwann Arc, Thomas Roach, Clara Baldin, Mario Gründlinger, Maximilian Mick, Patrick Herzog, Ilse Kranner and Susanne Zeilinger

Fungal Biol Biotechnol, 2026, 13
DOI: 10.1186/s40694-026-00208-0

Trichoderma: a multifunctional agent in plant health and microbiome interactions

Paulina Guzmán-Guzmán, Hassan Etesami and Gustavo Santoyo

BMC Microbiol, 2025, 25
DOI: 10.1186/s12866-025-04158-2

Fungal social influencers: secondary metabolites as a platform for shaping the plant‐associated community

Lorena I. Rangel, Olivia Hamilton, Ronnie de Jonge and Melvin D. Bolton

The Plant Journal, 2021, 108, 632
DOI: 10.1111/tpj.15490

Plant-microbiota interactions under drought stress: genetic and ecological mechanisms shaping drought-resistant rhizospheres

Zhe Wang, Huanqing Huang, Haifang Liu, Chenyu Guo, Jianmin Fan, Lihua Xie and Shiping Cheng

Plant Growth Regul, 2026, 106
DOI: 10.1007/s10725-026-01450-7

Rhizosphere Colonization Determinants by Plant Growth-Promoting Rhizobacteria (PGPR)

Gustavo Santoyo, Carlos Alberto Urtis-Flores, Pedro Damián Loeza-Lara, Ma. del Carmen Orozco-Mosqueda and Bernard R. Glick

Biology, 2021, 10, 475
DOI: 10.3390/biology10060475

Microbiome as a Key Player in Sustainable Agriculture and Human Health

Jarupula Suman, Amitava Rakshit, Siva Devika Ogireddy, Sonam Singh, Chinmay Gupta and J. Chandrakala

Front. Soil Sci., 2022, 2
DOI: 10.3389/fsoil.2022.821589

Rhizobacteria-Mediated Activation of the Fe Deficiency Response in Arabidopsis Roots: Impact on Fe Status and Signaling

Eline H. Verbon, Pauline L. Trapet, Sophie Kruijs, Coline Temple-Boyer-Dury, T. Gerrit Rouwenhorst and Corné M. J. Pieterse

Front. Plant Sci., 2019, 10
DOI: 10.3389/fpls.2019.00909

Role of textile effluent fertilization with biosurfactant to sustain soil quality and nutrient availability

Ratan Singh, Bernard R. Glick and Dheeraj Rathore

Journal of Environmental Management, 2020, 268, 110664
DOI: 10.1016/j.jenvman.2020.110664

Differential Assembly of Rhizosphere Microbiome and Metabolome in Rice with Contrasting Resistance to Blast Disease

Jian Wang, Deqiang Li, Daihua Lu, Cheng Chen, Qin Zhang, Rongtao Fu and Fu Huang

Microorganisms, 2025, 13, 2789
DOI: 10.3390/microorganisms13122789

How Can We Define “Optimal Microbiota?”: A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture

Wakako Ikeda-Ohtsubo, Sylvia Brugman, Craig H. Warden, Johanna M. J. Rebel, Gert Folkerts and Corné M. J. Pieterse

Front. Nutr., 2018, 5
DOI: 10.3389/fnut.2018.00090

Karrikins-induced accumulation of Salvianolic acid B is mediated by calcium–calmodulin, brassinolide and jasmonic acid in Salvia miltiorrhiza

H. Sun, Z.-X. Xu, J. Zhou and L.-P. Guo

South African Journal of Botany, 2020, 132, 45
DOI: 10.1016/j.sajb.2020.03.033

Microbial Metabolites as Ligands to Xenobiotic Receptors: Chemical Mimicry as Potential Drugs of the Future

Zdeněk Dvořák, Hao Li and Sridhar Mani

Drug Metabolism and Disposition, 2023, 51, 219
DOI: 10.1124/dmd.122.000860

Characterization of a Versatile Plant Growth-Promoting Rhizobacterium Pseudomonas mediterranea Strain S58

Yilin Gu, Jing Wang, Zhenyuan Xia and Hai-Lei Wei

Microorganisms, 2020, 8, 334
DOI: 10.3390/microorganisms8030334

Inhibition of jasmonate-mediated plant defences by the fungal metabolite higginsianin B

Jean-Félix Dallery, Marlene Zimmer, Vivek Halder, Mohamed Suliman, Sandrine Pigné, Géraldine Le Goff, Despoina D Gianniou, Ioannis P Trougakos, Jamal Ouazzani, Debora Gasperini, Richard J O’Connell and Robert Hancock

Journal of Experimental Botany, 2020, 71, 2910
DOI: 10.1093/jxb/eraa061

Delineation of mechanistic approaches of rhizosphere microorganisms facilitated plant health and resilience under challenging conditions

Ajinath Dukare, Priyank Mhatre, Hemant S. Maheshwari, Samadhan Bagul, B. S. Manjunatha, Yogesh Khade and Umesh Kamble

3 Biotech, 2022, 12
DOI: 10.1007/s13205-022-03115-4

Trichodestruxins A–D: Cytotoxic Cyclodepsipeptides from the Endophytic Fungus Trichoderma harzianum

Zhiguo Liu, Yi Sun, Mengyue Tang, Peng Sun, Anqi Wang, Yanqi Hao, Yanan Wang and Yuehu Pei

J. Nat. Prod., 2020, 83, 3635
DOI: 10.1021/acs.jnatprod.0c00808

Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant

Mengbin Chen, Qikun Liu, Shu-Shan Gao, Abbegayle E. Young, Steven E. Jacobsen and Yi Tang

Proc. Natl. Acad. Sci. U.S.A., 2019, 116, 5499
DOI: 10.1073/pnas.1819998116

Metabolites Secreted by a Plant-Growth-Promoting Pantoea agglomerans Strain Improved Rooting of Pyrus communis L. cv Dar Gazi Cuttings

Francesca Luziatelli, Lorenzo Gatti, Anna Grazia Ficca, Gabriele Medori, Cristian Silvestri, Francesca Melini, Rosario Muleo and Maurizio Ruzzi

Front. Microbiol., 2020, 11
DOI: 10.3389/fmicb.2020.539359

Pseudomonas Lipopeptide-Mediated Biocontrol: Chemotaxonomy and Biological Activity

Feyisara Eyiwumi Oni, Qassim Esmaeel, Joseph Tobias Onyeka, Rasheed Adeleke, Cedric Jacquard, Christophe Clement, Harald Gross, Essaid Ait Barka and Monica Höfte

Molecules, 2022, 27, 372
DOI: 10.3390/molecules27020372

Endophytes and Epiphytes From the Grapevine Leaf Microbiome as Potential Biocontrol Agents Against Phytopathogens

Sébastien Bruisson, Mónica Zufferey, Floriane L’Haridon, Eva Trutmann, Abhishek Anand, Agnès Dutartre, Mout De Vrieze and Laure Weisskopf

Front. Microbiol., 2019, 10
DOI: 10.3389/fmicb.2019.02726

Repellent, oviposition-deterrent, and insecticidal activity of the fungal pathogen Colletotrichum fioriniae on Drosophila suzukii (Diptera: Drosophilidae) in highbush blueberries

Pablo Urbaneja-Bernat, Timothy Waller and Cesar Rodriguez-Saona

Sci Rep, 2020, 10
DOI: 10.1038/s41598-020-71341-y

The secondary metabolites profile of Stemphylium lycopersici, the causal agent of tomato grey leaf spot, is complex and includes host and non-host specific toxins

Rocio Medina, Mario E. E. Franco, Lucía da Cruz Cabral, José Vera Bahima, Andrea Patriarca, Pedro A. Balatti and Mario C. N. Saparrat

Australasian Plant Pathol., 2021, 50, 105
DOI: 10.1007/s13313-020-00753-1

Clonostachys rosea Promotes Root Growth in Tomato by Secreting Auxin Produced through the Tryptamine Pathway

Zhengyuan Han, Hossein Ghanizadeh, Haotian Zhang, Xinmao Li, Tiantian Li, Qi Wang, Jiayin Liu and Aoxue Wang

JoF, 2022, 8, 1166
DOI: 10.3390/jof8111166

Microbial methylglyoxal metabolism contributes towards growth promotion and stress tolerance in plants

Charanpreet Kaur, Mayank Gupta, Sampurna Garai, Shashank K. Mishra, Puneet Singh Chauhan, Sudhir Sopory, Sneh L. Singla‐Pareek, Nidhi Adlakha and Ashwani Pareek

Environmental Microbiology, 2022, 24, 2817
DOI: 10.1111/1462-2920.15743

Chemical dialogues in the rhizosphere: Metabolomics perspectives on plant defence and microbial interactions

Nompumelelo R. Sibanyoni, Kamogelo Mmotla, Manamele D. Mashabela, Lizelle A. Piater, Pavel Kerchev and Msizi I. Mhlongo

Plant Soil, 2026, 518, 577
DOI: 10.1007/s11104-025-08010-4

Root colonization by beneficial rhizobacteria

Yunpeng Liu, Zhihui Xu, Lin Chen, Weibing Xun, Xia Shu, Yu Chen, Xinli Sun, Zhengqi Wang, Yi Ren, Qirong Shen and Ruifu Zhang

FEMS Microbiology Reviews, 2024, 48
DOI: 10.1093/femsre/fuad066

The Age of Coumarins in Plant–Microbe Interactions

Ioannis A Stringlis, Ronnie de Jonge and Corn� M J Pieterse

Plant and Cell Physiology, 2019, 60, 1405
DOI: 10.1093/pcp/pcz076

drSMALL: Database for disease resistance-shaping small molecules derived from the plant microbiome

Rui Cheng, Tingli Ke, Fangze Gui, Junnan Li, Xiaoyan Zhang, Juan Ignacio Vílchez and Haruna Matsumoto

Crop Health, 2025, 3
DOI: 10.1007/s44297-025-00042-7

Pseudomonas simiae WCS417: star track of a model beneficial rhizobacterium

Corné M. J. Pieterse, Roeland L. Berendsen, Ronnie de Jonge, Ioannis A. Stringlis, Anja J. H. Van Dijken, Johan A. Van Pelt, Saskia C. M. Van Wees, Ke Yu, Christos Zamioudis and Peter A. H. M. Bakker

Plant Soil, 2021, 461, 245
DOI: 10.1007/s11104-020-04786-9

Pseudomonas Cyclic Lipopeptides Suppress the Rice Blast Fungus Magnaporthe oryzae by Induced Resistance and Direct Antagonism

Olumide Owolabi Omoboye, Feyisara Eyiwumi Oni, Humaira Batool, Henok Zimene Yimer, René De Mot and Monica Höfte

Front. Plant Sci., 2019, 10
DOI: 10.3389/fpls.2019.00901

Microbial Inoculation for Productivity Improvements and Potential Biological Control in Sugar Beet Crops

Gonzalo Sacristán-Pérez-Minayo, Domingo Javier López-Robles, Carlos Rad and Luis Miranda-Barroso

Front. Plant Sci., 2020, 11
DOI: 10.3389/fpls.2020.604898

Phenylpropanoid Pathway Engineering: An Emerging Approach towards Plant Defense

Vivek Yadav, Zhongyuan Wang, Chunhua Wei, Aduragbemi Amo, Bilal Ahmed, Xiaozhen Yang and Xian Zhang

Pathogens, 2020, 9, 312
DOI: 10.3390/pathogens9040312

Characterization and Identification of Pantoea calida from Contaminated Soil and Its Biocontrol by Streptomyces coeruleorubidus

Majdah Aburas

World J Environ Biosci, 2022, 11, 50
DOI: 10.51847/JxVBFGWSn1

Pseudomonas sp. COW3 Produces New Bananamide-Type Cyclic Lipopeptides with Antimicrobial Activity against Pythium myriotylum and Pyricularia oryzae

Olumide Owolabi Omoboye, Niels Geudens, Matthieu Duban, Mickaël Chevalier, Christophe Flahaut, José C. Martins, Valérie Leclère, Feyisara Eyiwumi Oni and Monica Höfte

Molecules, 2019, 24, 4170
DOI: 10.3390/molecules24224170

Plant-microbe features of Dendrobium fimbriatum (Orchidaceae) fungal community

Quentin Favre-Godal, Paul Schwob, Nicole Lecoultre, Valérie Hofstetter, Lorène Gourguillon, Ludivine Riffault-Valois, Sonia Lordel-Madeleine, Katia Gindro and Patrick Choisy

Symbiosis, 2021, 85, 31
DOI: 10.1007/s13199-021-00786-0

Siderophore producing Bacillus spp. and Ochrobactrum grignonense enhance the iron content and yield of groundnut genotypes (Arachis hypogaea L.) in calcareous soils

Reddy Kiran Kalyan Vanniya Sreeramulu, Meena Suresh, Karthikeyan Subburamu and Jawahar Durairaj

Arab J Geosci, 2023, 16
DOI: 10.1007/s12517-023-11743-0

Bacillus velezensis CLA178-Induced Systemic Resistance of Rosa multiflora Against Crown Gall Disease

Lin Chen, Xinghong Wang, Qinghua Ma, Lusen Bian, Xue Liu, Yan Xu, Huihui Zhang, Jiahui Shao and Yunpeng Liu

Front. Microbiol., 2020, 11
DOI: 10.3389/fmicb.2020.587667

Cercospora beticola: The intoxicating lifestyle of the leaf spot pathogen of sugar beet

Lorena I. Rangel, Rebecca E. Spanner, Malaika K. Ebert, Sarah J. Pethybridge, Eva H. Stukenbrock, Ronnie de Jonge, Gary A. Secor and Melvin D. Bolton

Molecular Plant Pathology, 2020, 21, 1020
DOI: 10.1111/mpp.12962

Trichoderma Species: Versatile Plant Symbionts

Paulina Guzmán-Guzmán, María Daniela Porras-Troncoso, Vianey Olmedo-Monfil and Alfredo Herrera-Estrella

Phytopathology®, 2019, 109, 6
DOI: 10.1094/PHYTO-07-18-0218-RVW

Harnessing microbial multitrophic interactions for rhizosphere microbiome engineering

Muhammad Siddique Afridi, Ali Fakhar, Ashwani Kumar, Sher Ali, Flavio H.V. Medeiros, Muhammad Atif Muneer, Hina Ali and Muhammad Saleem

Microbiological Research, 2022, 265, 127199
DOI: 10.1016/j.micres.2022.127199

Plant–microbe interactions: Plant-exuded myo-inositol attracts specific bacterial taxa

Ákos T. Kovács

Current Biology, 2023, 33, R825
DOI: 10.1016/j.cub.2023.06.066

Antibiotic‐producing plant‐associated bacteria, anti‐virulence therapy and microbiome engineering: Integrated approaches in sustainable agriculture

Amalia Roca, Laura Monge‐Olivares and Miguel A. Matilla

Microbial Biotechnology, 2024, 17
DOI: 10.1111/1751-7915.70025

Plant Microbiome Engineering: Expected Benefits for Improved Crop Growth and Resilience

Inessa Arif, Maria Batool and Peer M. Schenk

Trends in Biotechnology, 2020, 38, 1385
DOI: 10.1016/j.tibtech.2020.04.015

Metabolic signatures of rhizobacteria‐induced plant growth promotion

Je‐Seung Jeon, Dominika Rybka, Natalia Carreno‐Quintero, Ric De Vos, Jos M. Raaijmakers and Desalegn W. Etalo

Plant Cell & Environment, 2022, 45, 3086
DOI: 10.1111/pce.14385

The Extended Plant Immune System

Corné M. J. Pieterse

MPMI, 2025, 38, 780
DOI: 10.1094/MPMI-10-25-0144-HH

Microbial diversity across tea varieties and ecological niches: correlating tea polyphenol contents with stress resistance

Su-hang Yao, Chi Zhou, Sai-jun Li, Yu-han Li, Cheng-wen Shen, Yu Tao and Xin Li

Front. Microbiol., 2024, 15
DOI: 10.3389/fmicb.2024.1439630

Genetic factors involved in rhizosphere colonization by phytobeneficial Pseudomonas spp.

Antoine Zboralski and Martin Filion

Computational and Structural Biotechnology Journal, 2020, 18, 3539
DOI: 10.1016/j.csbj.2020.11.025

Efficient Production of Pyrrolnitrin by Optimizing Culture Medium and Blocking Competitive Secondary Metabolic Pathways in Pseudomonas protegens JP2-4390

Shen Jiamin, Zhang Xinxin, Wang Yucong, Chen Guoqing and Feng Guozhong

Rice Science, 2025, 32, 156
DOI: 10.1016/j.rsci.2024.12.007

Differential modulation of tomato root exudates by Streptomyces strains underlies contrasting control of Fusarium oxysporum f. sp. lycopersici

Valerio Mattei, Kjell Sergeant, Marco Saracchi, Daniela Bulgari, Andrea Kunova, Cristina Pizzatti, Paolo Cortesi, Jenny Renaut and Matias Pasquali

Front. Plant Sci., 2026, 17
DOI: 10.3389/fpls.2026.1759226

Regulation of indole‐3‐acetic acid biosynthesis and consequences of auxin production deficiency in Serratia plymuthica

Miriam Rico‐Jiménez, Salvador Muñoz‐Mira, Cristina Lomas‐Martínez, Tino Krell and Miguel A. Matilla

Microbial Biotechnology, 2023, 16, 1671
DOI: 10.1111/1751-7915.14296

A review on mechanisms and prospects of endophytic bacteria in biocontrol of plant pathogenic fungi and their plant growth-promoting activities

Md. Arshad Ali, Temoor Ahmed, Ezzeldin Ibrahim, Muhammad Rizwan, Khim Phin Chong and Jean Wan Hong Yong

Heliyon, 2024, 10, e31573
DOI: 10.1016/j.heliyon.2024.e31573

Taxonomy of Pseudomonas spp. determines interactions with Bacillus subtilis

Mark Lyng, Birta Þórisdóttir, Sigrún H. Sveinsdóttir, Morten L. Hansen, Lars Jelsbak, Gergely Maróti, Ákos T. Kovács and Michela Gambino

mSystems, 2024, 9
DOI: 10.1128/msystems.00212-24

Stomata in a state of emergency: H2O2 is the target locked

Olivier Rodrigues and Libo Shan

Trends in Plant Science, 2022, 27, 274
DOI: 10.1016/j.tplants.2021.10.002

Preparation and characterization of fish-derived protein hydrolysate and assessment of its effect on tomato and sorghum plants growth and productivity

Fatima Tayi, Flore Nadine Nelly Noah Metomo, Younes Essamlali, Adil Akil, Othmane Amadine, Soumia Aboulhrouz, Said Sair and Mohamed Zahouily

Sustainable Chemistry and Pharmacy, 2025, 43, 101877
DOI: 10.1016/j.scp.2024.101877

Cyclic lipopeptide‐producing Pseudomonas koreensis group strains dominate the cocoyam rhizosphere of a Pythium root rot suppressive soil contrasting with P. putida prominence in conducive soils

Feyisara Eyiwumi Oni, Niels Geudens, Joseph T. Onyeka, Oluwatoyin Faith Olorunleke, Ayodeji Ekundayo Salami, Olumide Owolabi Omoboye, Anthony Arguelles Arias, Amayana Adiobo, Stefaan De Neve, Marc Ongena, José C. Martins and Monica Höfte

Environmental Microbiology, 2020, 22, 5137
DOI: 10.1111/1462-2920.15127

In-depth genome and comparative genome analysis of a metal-resistant environmental isolate Pseudomonas aeruginosa S-8

Kiran Kumari, Ayushi Sinha, Parva Kumar Sharma and Rajnish Prakash Singh

Front. Cell. Infect. Microbiol., 2025, 15
DOI: 10.3389/fcimb.2025.1511507

Transcriptomic characterization of Trichoderma harzianum T34 primed tomato plants: assessment of biocontrol agent induced host specific gene expression and plant growth promotion

Mohd Aamir, V. Shanmugam, Manish Kumar Dubey, Fohad Mabood Husain, Mohd Adil, Waquar Akhter Ansari, Ashutosh Rai and Pankaj Sah

BMC Plant Biol, 2023, 23
DOI: 10.1186/s12870-023-04502-6

Changes in the Rhizosphere Biome Depending on the Variety of Wheat, Timing of Its Growing Season, and Agrochemical Components in the Soils of Italy

Tommaso Bardelli, Flavio Fornasier, Elena Novarina, Antonella Donniacuo, Elio Romano, Pier Giacomo Bianchi and Anna Pia Maria Giulini

Agronomy, 2024, 14, 832
DOI: 10.3390/agronomy14040832

A Framework for the Selection of Plant Growth-Promoting Rhizobacteria Based on Bacterial Competence Mechanisms

Carol V. Amaya-Gómez, Mario Porcel, Leyanis Mesa-Garriga, Martha I. Gómez-Álvarez and Ning-Yi Zhou

Appl Environ Microbiol, 2020, 86
DOI: 10.1128/AEM.00760-20

Beneficial features of plant growth-promoting rhizobacteria for improving plant growth and health in challenging conditions: A methodical review

Ewa Oleńska, Wanda Małek, Małgorzata Wójcik, Izabela Swiecicka, Sofie Thijs and Jaco Vangronsveld

Science of The Total Environment, 2020, 743, 140682
DOI: 10.1016/j.scitotenv.2020.140682

Bioformulation of Bacillus proteolyticus MITWPUB1 and its biosurfactant to control the growth of phytopathogen Sclerotium rolfsii for the crop Brassica juncea var local, as a sustainable approach

Humaira Mukadam, Shikha V. Gaikwad, Nithya N. Kutty and Vikrant D. Gaikwad

Front. Bioeng. Biotechnol., 2024, 12
DOI: 10.3389/fbioe.2024.1362679

Microbial ecology to support integrative efficacy improvement of biocontrol agents for postharvest diseases management

Abdoul Razack Sare, M. Haissam Jijakli and Sebastien Massart

Postharvest Biology and Technology, 2021, 179, 111572
DOI: 10.1016/j.postharvbio.2021.111572

Combining the Seed Endophytic Bacteria and the Back to the Future Approaches for Plant Holonbiont Breeding

Maïwenn L'Hoir and Robin Duponnois

Front. Agron., 2021, 3
DOI: 10.3389/fagro.2021.724450

Legume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification

Mengjie Qiao, Ruibo Sun, Zixuan Wang, Kenneth Dumack, Xingguang Xie, Chuanchao Dai, Ertao Wang, Jizhong Zhou, Bo Sun, Xinhua Peng, Michael Bonkowski and Yan Chen

Nat Commun, 2024, 15
DOI: 10.1038/s41467-024-47159-x

Activity and Phylogenetics of the Broadly Occurring Family of Microbial Nep1-Like Proteins

Michael F. Seidl and Guido Van den Ackerveken

Annu. Rev. Phytopathol., 2019, 57, 367
DOI: 10.1146/annurev-phyto-082718-100054

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

Eric J. N. Helfrich, Christine M. Vogel, Reiko Ueoka, Martin Schäfer, Florian Ryffel, Daniel B. Müller, Silke Probst, Markus Kreuzer, Jörn Piel and Julia A. Vorholt

Nat Microbiol, 2018, 3, 909
DOI: 10.1038/s41564-018-0200-0