Structural region essential for amyloid fibril formation in cytochrome c elucidated by optical trapping

Shun Hirota, Chun-Liang Chiu, Chieh-Ju Chang, Pei-Hua Lo, Tien Chen, Hongxu Yang, Masaru Yamanaka, Tsuyoshi Mashima, Cheng Xie, Hiroshi Masuhara and Teruki Sugiyama

Chem. Commun., 2022, 58, 12839
DOI: 10.1039/D2CC04647D

Construction of ligand-binding controlled hemoprotein assemblies utilizing 3D domain swapping

Tsuyoshi Mashima, Masaru Yamanaka, Atsuki Yoshida, Naoya Kobayashi, Yui Kanaoka, Takayuki Uchihashi and Shun Hirota

Chem. Commun., 2024, 60, 9440
DOI: 10.1039/D4CC03129F

Design, structures, and applications of an icosahedral artificial protein nanocage, TIP60

Norifumi Kawakami, Kenji Miyamoto and Ryoichi Arai

Chem. Commun., 2025, 61, 9584
DOI: 10.1039/D5CC01222H

Supramolecular assembling systems of hemoproteins using chemical modifications

Koji Oohora

J Incl Phenom Macrocycl Chem, 2023, 103, 97
DOI: 10.1007/s10847-023-01181-6

The past, present, and future of artificial zinc finger proteins: design strategies and chemical and biological applications

Shigeru Negi, Miki Imanishi, Mami Hamori, Yuka Kawahara-Nakagawa, Wataru Nomura, Kanae Kishi, Nobuhito Shibata and Yukio Sugiura

J Biol Inorg Chem, 2023, 28, 249
DOI: 10.1007/s00775-023-01991-6

Why is Dimeric 3D Domain Swapping in Antibody Light Chains Missing from the Solution? Atomistic Insights Mechanisms

Lian Duan, Kowit Hengphasatporn, Takahiro Sakai, Ryo Fujiki, Norio Yoshida, Shun Hirota and Yasuteru Shigeta

J. Phys. Chem. B, 2024, 128, 9086
DOI: 10.1021/acs.jpcb.4c03234

Anion effects on the structure and stability of 3D domain–swapped cytochrome c dimer

Kodai Fujiwara, Michiko Ryuzaki, Masaru Yamanaka, Tsuyoshi Mashima, Tomonori Saotome, Shun-ichi Kidokoro and Shun Hirota

Chemistry Letters, 2024, 53
DOI: 10.1093/chemle/upae150

Construction of a Cyclic Regular‐Triangle Trimer of Cytochrome c555 with a Central Hole Using Sortase A

Gissi Novientri, Kodai Fujiwara, Tsuyoshi Mashima, Hiroaki Matsuura, Hideaki Ogata, Takayuki Uchihashi, Sotaro Fujii, Yoshihiro Sambongi and Shun Hirota

Chemistry A European J, 2025, 31
DOI: 10.1002/chem.202404736

Strand-Swapped SH3 Domain Dimer with Superoxide Dismutase Activity

Florian R. Häge, Merlin Schwan, Marcos Rafael Conde González, Jonas Huber, Stefan Germer, Matilde Macrì, Jürgen Kopp, Irmgard Sinning and Franziska Thomas

ACS Cent. Sci., 2025, 11, 157
DOI: 10.1021/acscentsci.4c01347

Understanding domain swapping in the c-Src SH3 domain through hinge-loop mutagenesis

M. Carmen Salinas-Garcia, Marina Plaza-Garrido, Jose C. Martinez and Ana Camara-Artigas

Acta Crystallogr D Struct Biol, 2025, 81, 492
DOI: 10.1107/S2059798325006977

Development of Dynamic Bionanostructures Based on Peptides: Molecular Encapsulation Inside Microtubules and Light-induced Propulsion of Microspheres

Hiroshi Inaba

Chem. Lett., 2023, 52, 459
DOI: 10.1246/cl.230121

Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping

Takahiro Sakai, Tsuyoshi Mashima, Naoya Kobayashi, Hideaki Ogata, Lian Duan, Ryo Fujiki, Kowit Hengphasatporn, Taizo Uda, Yasuteru Shigeta, Emi Hifumi and Shun Hirota

Nat Commun, 2023, 14
DOI: 10.1038/s41467-023-43443-4

Apoprotein Intermolecular Interactions and Heme Insertion for 3D Domain Swapping in Myoglobin

Gissi Novientri, Koji Takeda, Lian Duan, Kowit Hengphasatporn, Yasuteru Shigeta, Cheng Xie, Tsuyoshi Mashima and Shun Hirota

ACS Omega, 2025, 10, 7039
DOI: 10.1021/acsomega.4c09948

Experimental and Computational Studies on Domain-Swapped Structure Stabilization of an Antibody Light Chain by Disulfide Bond Introduction

Wahyu Fitriana, Takahiro Sakai, Lian Duan, Kowit Hengphasatporn, Yasuteru Shigeta, Tsuyoshi Mashima, Taizo Uda, Emi Hifumi and Shun Hirota

J. Med. Chem., 2024, 67, 22313
DOI: 10.1021/acs.jmedchem.4c02570