Mapping a single-molecule folding process onto a topological space

Maziar Heidari, Vahid Satarifard and Alireza Mashaghi

Phys. Chem. Chem. Phys., 2019, 21, 20338
DOI: 10.1039/C9CP03175H

Implications of Molecular Topology for Nanoscale Mechanical Unfolding

Narges Nikoofard and Alireza Mashaghi

J. Phys. Chem. B, 2018, 122, 9703
DOI: 10.1021/acs.jpcb.8b09454

Design principles and control of non-cooperative oscillatory enzymatic reactions

Mehrad Babaei, Tom M.J. Evers, Nunzio Del Gaudio, Lucia Altucci and Alireza Mashaghi

Chemical Engineering Science, 2024, 293, 120040
DOI: 10.1016/j.ces.2024.120040

Vertex results for the robust analysis of uncertain biochemical systems

Franco Blanchini, Patrizio Colaneri, Giulia Giordano and Irene Zorzan

J. Math. Biol., 2022, 85
DOI: 10.1007/s00285-022-01799-z

Generalized Circuit Topology of Folded Linear Chains

Anatoly Golovnev and Alireza Mashaghi

iScience, 2020, 23, 101492
DOI: 10.1016/j.isci.2020.101492

Combinatorial Strategy for Studying Biochemical Pathways in Double Emulsion Templated Cell‐Sized Compartments

Elena C. dos Santos, Andrea Belluati, Danut Necula, Dominik Scherrer, Claire E. Meyer, Riccardo P. Wehr, Emanuel Lörtscher, Cornelia G. Palivan and Wolfgang Meier

Advanced Materials, 2020, 32
DOI: 10.1002/adma.202004804

Filtering input fluctuations in intensity and in time underlies stochastic transcriptional pulses without feedback

Alberto Stefano Sassi, Mayra Garcia-Alcala, Mark J. Kim, Philippe Cluzel and Yuhai Tu

Proc. Natl. Acad. Sci. U.S.A., 2020, 117, 26608
DOI: 10.1073/pnas.2010849117