Open Access Article
Natalie
Schäfer
ab,
Lukas
Glanz
c,
Arne
Lützen
c and
Florian
Beuerle
*abd
aJulius-Maximilians-Universität Würzburg, Institut für Organische Chemie, Am Hubland, 97074 Würzburg, Germany
bJulius-Maximilians-Universität Würzburg, Center for Nanosystems Chemistry (CNC), Theodor-Boveri-Weg, 97074 Würzburg, Germany
cUniversität Bonn, Kekulé-Institut für Organische Chemie und Biochemie, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
dEberhard Karls Universität Tübingen, Institut für Organische Chemie, Auf der Morgenstelle 18, 72076 Tübingen, Germany. E-mail: florian.beuerle@uni-tuebingen.de
First published on 22nd January 2025
2,2′-Functionalization induces axial chirality within the orthogonal aromatic scaffold of 9,9′-bispirofluorene. By implementing boronic acids at these positions, well-suited precursors for chiral boronate ester cages are generated. As a key intermediate, (P)-9,9′-bispirofluorene-2,2′-bistriflate (P)-5 was synthesized via a four-step sequence of twofold Friedel–Crafts acylation, Baeyer–Villiger oxidation, hydrolysis, and triflate formation. Chiral resolution was achieved via chiral HPLC for the dihydroxy intermediate. In a modular manner, Pd-catalyzed borylation or cross-coupling afforded either diboronic acid (P)-B* or elongated derivative (P)-B*Ph possessing additional phenylene spacers. For both enantiomerically pure linkers, reaction with hexahydroxy tribenzotriquinacene A in THF under water-removing conditions afforded isoreticular chiral organic cages (P,P,P)-A2B*3 and (P,P,P)-A2B*Ph3. Both cages possess a chiral trigonal–bipyramidal geometry and were characterized by 1H, 13C and DOSY NMR spectroscopy and MALDI-TOF mass spectrometry. Chiral self-sorting of the bispirofluorene precursors was investigated by reactions of A with racemic linkers rac-B* and rac-B*Ph. For shorter linker rac-B*, quantitative self-sorting into a racemic mixture of (P,P,P)-A2B*3 and (M,M,M)-A2B*3 occurred. For elongated derivative rac-B*Ph however, the increased flexibility introduced by the phenylene extension resulted in much lower selectivity and self-recognition. Instead a more complex product mixture was obtained and the racemic mixture of A2B*Ph3 was isolated in much lower yield of around 20%. Semiempirical PM6 calculations for both homo- and heterochiral cages and macrocyclic intermediates allowed for an estimation of macrocyclic strain energies and provided in-depth insight into cage formation pathways and self-sorting properties.
Due to the rigid modular assembly, the chirality of the individual chiral building blocks might be amplified within the well-defined 3D cage assembly, and even new properties and effects could emerge via the mutual interaction between these subunits. While synthesis from enantiopure starting materials will always end up in homochiral assemblies, racemic precursors might lead to more complex reactions, which could also give diastereomeric assemblies and chiral self-sorting might occur.20 Such recognition processes have presumably played a significant role during the evolution of homochiral biological systems, which makes investigations towards self-sorting in organic cages very interesting model studies. In a landmark example, the Mastalerz group studied the self-sorting in tribenzotriquinacene-based (TBTQ) imine cages with either [2 + 3]9 or cubic [8 + 12]10 stoichiometry.
Here we report on the synthesis and characterization of two isoreticular chiral [2 + 3] boronate ester cages based on tripodal TBTQ nodes and chiral spirobifluorene (SBF) linkers. While homochiral [2 + 3] assemblies are obtained from enantiomerically enriched linkers, self-sorting was investigated for the synthesis with racemic precursors.
54 as key intermediate in 67% yield over three steps (for more details on synthetic procedures and analytical data see ESI‡). At this stage, the enantiomers could be separated by chiral HPLC.53 Both the racemate and the pure P isomer were converted to the bistriflates rac-5 and (P)-5,55 respectively, which served as precursors for the direct implementation of the boronic acid sites or an isoreticular phenylene extension.
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Scheme 1 Synthesis of chiral linkers and cages: (a) AlCl3/AcCl, CH2Cl2/MeNO2 1 : 1, rt, 12 h, 96%;53 (b) mCPBA, CH2Cl2, 45 °C, 2 d, 73%;54,55 (c) NaOH/H2O, MeOH, 50 °C, 10 min, 96%;54 (d) 1. HPLC separation,53 2. Tf2O/NEt3, CH2Cl2, −78 °C, 2 h, 73%;55 (e) Pd(OAc)2/XPhos/KOAc/B2pin2, 1,4-dioxane, 110 °C, 1 d, 99%,55 (f) MeB(OH)2/TFA, CH2Cl2, rt, 1 d, (P): 72%, rac: 68%; (g) A, 4 Å MS, THF, rt, 5 d, 74%; (h) Pd(OAc)2/SPhos/K3PO4/4-TMSPhB(OH)2, 1,4-dioxane/H2O 5 : 1, 100 °C, 1 d, 93%; (i) BBr3, CH2Cl2, rt, 2 h, (P): 98%, rac: 67%; (j) A, 4 Å MS, THF, rt, 14 d, 65%. | ||
On the one hand, Pd-catalysed borylation with bis(pinacolato)-diboron55 and subsequent deprotection under acidic conditions afforded the shorter chiral linkers rac-B* and (P)-B*. On the other hand, Suzuki–Miayura reaction with 4-(trimethylsilyl)-phenylboronic acid (6) followed by direct transformation of the silyl groups into boronic acids with BBr3 yielded the elongated linkers rac-B*Phe and (P)-B*Phe.
Initially, we investigated reactions between hexahydroxy TBTQ A and enantiomerically pure SBF derivatives. For the shorter linker, A and (P)-B* were dissolved in THF-d8 in 2
:
3 molar ratio and, subsequently, 4 Å molecular sieves were added. 1H NMR reaction monitoring of the bridgehead methine protons showed a quantitative downfield shift towards one singlet at δ = 4.43 ppm after five days, thus indicating the formation of a highly symmetrical structure (Fig. 1a). Intriguingly, only very small amounts of doubly condensed TBTQ species were identified during the reaction (Fig. 1b), suggesting a smooth cage formation and cooperative closure of the final binding site. After removal of the solvent, pure cage A2B*3 was isolated in 74% yield and the obtained solid was easily dissolved in CDCl3 for further characterization. In contrast to previously reported A2B3 cages based on ortho-terphenyl linkers with point group D3h, symmetry is reduced to D3 after implementation of chiral SBF units, which is, e.g., illustrated by the splitting of the aromatic TBTQ protons into two singlets at δ = 7.19 and 7.12 ppm (Fig. 1a). MALDI-TOF MS measurements (Fig. 1c) only revealed the molecular ion peak for A2B*3 at m/z = 1860.2474 and no signals for any smaller or larger assemblies. From DOSY NMR measurements in CDCl3 (Fig. 1d), a diffusion constant of D = 3.84 × 10−10 m2 s−1 was obtained.
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| Fig. 1 (a) Partial 1H NMR spectra (400 MHz, THF-d8, 295.6 K) of TBTQ A (top), the finished reaction mixture of A and (P)-B* after five days (middle) and (P)-B*; (b) 1H NMR reaction monitoring for the bridgehead methine protons directly after mixing (bottom) and after two (middle) and seven (top) days indicating the increasing degree of boronate ester formation in A; (c) MALDI-TOF MS and (d) DOSY NMR spectrum (400 MHz, CDCl3, 295.6 K) of (P,P,P)-A2B*3 (PM6-minimized57 space-filling model with the solvodynamic radius indicated as a semi-transparent grey sphere, image created with PyMOL58). | ||
The solvodynamic radius of rsolv = 1.01 nm calculated according to the Stokes–Einstein equation34 is in good agreement with a PM6-optimized57 molecular model of the intended A2B*3 cage (transparent sphere in Fig. 1d).
Under the same conditions, TBTQ A and elongated linker (P)-B*Ph were dissolved in THF-d8 in 2
:
3 molar ratio and 4 Å molecular sieves were added. In contrast to the smooth formation of A2B*3, reaction monitoring by 1H NMR spectroscopy indicated a much slower and imperfect cage formation. Even after eight days, no quantitative conversion was achieved, and minor impurities are still observable besides the main product (Fig. 2a, b and S26‡). As another difference to the smaller linker, free A is quickly consumed but twofold condensation products of A are dominant species during the reaction (Fig. 2b). After evaporating the solvent, the main species was separated from the impurities and isolated in 65% yield by dissolving in C2D2Cl4 (Fig. S25‡). Again, D3 symmetry of the isolated A2B*Ph3 is evidenced by one singlet of the methine protons at δ = 4.56 ppm and a splitting of the aromatic TBTQ protons at δ = 7.40 and 7.38 ppm. MALDI-TOF MS measurements of isolated A2B*Ph3 (Fig. 2c) only showed the molecular ion peak at m/z = 2317.0865. Finally, DOSY NMR measurements in C2D2Cl4 (Fig. 2d) revealed a diffusion coefficient of D = 1.02 × 10−10 m2 s−1 and a solvodynamic radius of rsolv = 1.25 nm,34 which resembles well to the elongated spacing between the two opposing TBTQ units. Overall, the combined analytical data strongly supports the formation of chiral cage (P,P,P)-A2B*Ph3 as the main species.
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| Fig. 2 (a) Partial 1H NMR spectra (400 MHz, THF-d8, 295.6 K) of TBTQ A (top), the reaction mixture of A and (P)-B*Ph after six days (middle) and chiral (P)-B*Ph (bottom); (b) 1H NMR reaction monitoring for the bridgehead methine protons directly after mixing (bottom) and after three (middle) and nine (top) days indicating the increasing degree of boronate ester formation in A; (c) MALDI-TOF MS and (d) DOSY NMR spectrum (400 MHz, C2D2Cl4, 295.6 K) of (P,P,P)-A2B*Ph3 (PM6-minimized57 space-filling model with the solvodynamic radius indicated as a semi-transparent grey sphere, image created with PyMOL58). | ||
For rac-B*, similar observations as for (P)-B* by 1H NMR spectroscopy indicated quantitative cage formation after five days. During the reaction, the TBTQ methine protons again showed only a small fraction of doubly condensed TBTQ species, and just one sharp singlet at the end of the reaction (Fig. 3a). After workup, rac-A2B*3 was isolated in astonishingly 94% yield, which was even higher as for the enantiopure cage. As 1H NMR spectroscopy for the reaction mixtures after five days indicated quantitative cage formation in both cases, we attribute the lower isolated yield for the homochiral cage to a lower solubility and a more difficult resolvation. As both isolated (P)-A2B*3 and rac-A2B*3 revealed identical 1H (Fig. S37 and S38‡), 13C (Fig. S39‡) and DOSY NMR (D = 3.79 × 10−10 m2 s−1, rsolv = 1.02 nm for rac-A2B*3, Fig. S33 and S34‡) data as well as MALDI-TOF mass spectra (Fig. S40‡), exclusive narcissistic self-sorting into enantiomeric cages (P,P,P)-A2B*3 and (M,M,M)-A2B*3 is evident for the reaction between A and rac-B*.
For elongated B*Ph however, a more complex picture emerged. Initially after the addition of 4 Å molecular sieves, boronate ester formation proceeded quickly with fast consumption of A and its monoester. MALDI-TOF MS after six days (Fig. S43‡) revealed a complex mixture consisting of boronate ester assemblies with [2 + 2], [2 + 3] and [2 + 4] A
:
B*Ph stoichiometry alongside (B*Ph)3 boroxine species with [0 + 3], [1 + 3] and [1 + 4] stoichiometry (see Fig. S44‡ for proposed molecular structures). After about a week though, precipitation started and continued for another week. By comparison with data for (P,P,P)-A2B*Ph3, the remaining solution contained rac-A2B*Ph3 as one plausible component besides larger amounts of byproducts (Fig. 3b and S42‡). The isolated precipitate was not soluble in CDCl3 even at elevated temperature. However, a soluble fraction was obtained in around 25% yield after stirring over anhydrous C2D2Cl4 at 130 °C. After careful removal of the solvent, 1H NMR spectroscopy after resolvation in CDCl3 revealed a mixture of two main species (Fig. S45‡). Due to the excellent agreement with data for (P,P,P)-A2B*Phe3, the major component is identified as the racemic mixture of (P,P,P) and (M,M,M) cages. For the minor component, NMR integration indicated a 1
:
1 ratio for precursors A and B*Phe. In contrast to D3 symmetrical A2B3 cages, the side product exhibited reduced symmetry. For instance, both methine and aromatic protons of the TBTQ units split into three and six singlets, respectively, and two sets of doublets were observed for the phenylene extensions of the linkers (Fig. S47‡). MALDI-TOF mass spectra revealed the molecular ion peak for racemicA2B*Phe3 at m/z = 2317.0768 and a smaller signal at m/z = 1832.7957 corresponding to a macrocyclic A2B*Phe2 intermediate (Fig. S48‡). Unfortunately, DOSY NMR data for this mixture of at least two components could not be fitted with a biexponential decay, but nevertheless hint towards [2 + 3] and [2 + 2] assemblies without evidence of larger structures (Fig. S35 and S36‡). Based on these combined data, the major and minor species can presumably be assigned to racemicA2B*Phe3 and a racemic mixture of a homochiral A2B*Phe2 macrocyclic intermediate, respectively. Based on NMR integration, these compounds are present in 3
:
1 ratio and are isolated in a combined yield of roughly 25%.
57 for all involved structures (Fig. S49 and Table S2‡). Since both building blocks possess rather rigid bite angles very close to 90°, we only considered [2 + 2] macrocyclic and [2 + 3] cage assemblies as any larger structures are unfeasible due to severe strain and have not been observed experimentally by MALDI TOF MS. For the macrocycles, two homochiral configurations with either cis- or trans-arrangement of the two unreacted catechol sites and three heterochiral assemblies (1× cis and 2× trans) are conceivable. In addition, the two diastereomeric cages with either (P,P,P) or (P,P,M) configuration have been calculated. For the mechanism of cage formation, it must be noted that only the cis-macrocycles may be further converted into cages, whereas the trans-isomers are off-pathway intermediates towards oligomeric side products.
Looking on these data, some remarkable differences between the two linkers become evident (Fig. 4).
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| Fig. 4 Relative strain energies (kJ mol−1; obtained from reaction enthalpies for homodesmotic reactions calculated from heats of formation from semiempirical PM6 geometry optimization with Spartan'2057) of homo- and heterochiral macrocyclic A2B2 intermediates and A2B3 cages for reactions between TBTQ A and chiral SBF linkers B* (left) and B*Ph (right); images of the optimized structures were created with PyMol.58 | ||
For B*, the direct attachment of the boronic acid groups to the SBF core significantly rigidifies any boronate ester assemblies. Despite the pairwise matching 90° bite angles, the twisted orientation of the aromatic wings in A and B* prevents the strain-free formation of square-shaped [2 + 2] macrocycles. The most stable isomer has cis-(P,P) configuration for which the two unreacted catechols are tilted towards each other to maximize π overlap between the dioxaborolane and adjacent phenyl rings with an inherent strain energy of 5.5 kJ mol−1 compared to the free precursors. Intriguingly, this on-pathway intermediate is perfectly predisposed and preorganized for the addition of a third linker (P)-B* toward homochiral (P,P,P)-A2B*3, which is best illustrated by the nearly perfect overlay for PM6-optimized structures of cis-(P,P)-A2B*3 and (P,P,P)-A2B*3 (Fig. S50‡). No reorganization is needed for the final ring closure, which does not add significant strain energy towards the closed homochiral cage assembly (Fig. 4). In contrast to this convergent pathway, all other macrocyclic intermediates are significantly higher in energy and also the heterochiral cage is thermodynamically disfavoured. These calculations are in line with experimental observations, as we observed facile and emergent formation of homochiral cages even for rac-B*. In an “all or nothing” fashion, most of the strain energy is already built up in the first macrocycle, which is cooperatively transformed into the cage with a high effective molarity for the final cyclization. The large energetic separation between homo- and heterochiral product induced strong narcissistic self-sorting for racemic mixtures.
For the elongated B*Ph, the potential hypersurface looks rather different. With the insertion of an additional phenylene unit between the dioxaborolane and the SBF unit, interactions are independent of the relative orientation of the TBTQ and SBF units but can be fine-tuned by rotation of the phenylene spacer. Therefore, all four possible macrocycles are almost strain-free with a square shape and parallel alignment of the free catechols on opposite corners. In contrast to the smaller cage, these reactive sites must be brought together to introduce the missing linker, and the entire strain energy is only accumulated in the final cyclization step (Fig. S50‡). This differing stability is also reflected in the experiments. When monitoring the formation of the larger cage by 1H NMR, fast consumption of A and monoester was observed. However, twofold boronate ester assemblies are accumulated for several days. This reflects the formation of macrocylces as rather stable resting states. Only by the slow removal of water, the less favorable equilibrium for the final cyclization is gradually shifted towards completely reacted (P,P,P)-A2B*Ph3. But even after two weeks, traces of partially reacted intermediates are still visible in 1H NMR (Fig. 2c). Recently, we made a similar observation of long-lived macrocyclic intermediates during the synthesis of highly strained A2C3 cages templated by endohedral hydrogen bonding.33
For reaction of (P)-B*Ph, the dynamic equilibrium between cis and trans macrocycle slowly converts most of the precursors into cages, as evident by the isolated yield of 65%. For the self-sorting experiments however, the additional meso-macrocycles make the product distribution even more complex and apparently give access to other heterochiral oligomers which precipitate over time. The minor component in the isolated product might be either the trans or cis macrocyle, which cannot be discriminated by NMR. It is unclear at this point if this side product is already present in the precipitate or if it is only formed during the solvation as the release of strain energy after cage opening might be facilitated in the presence of even traces of water.
These shape-persistent cages generate well-defined chiral cavities in the nm range and stereoselective host–guest chemistry is currently investigated. On the other hand, valuable insight into kinetic and thermodynamic aspects of cage formation mechanisms have been provided that enhance fundamental understanding in dynamic covalent chemistry and will guide the design and synthesis of novel tailormade materials based on porous organic cages.
Footnotes |
| † Dedicated to Prof. Dr. Frank Würthner on the occasion of his 60th birthday. |
| ‡ Electronic supplementary information (ESI) available: Synthetic procedures and characterization, DOSY data, self-sorting experiments, molecular modelling. See DOI: https://doi.org/10.1039/d4qo02012j |
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