Yelim
Yi
a,
Bokyung
Kim
b,
Mingeun
Kim
a,
Young Ho
Ko
c,
Jin Hae
Kim
*b and
Mi Hee
Lim
*a
aDepartment of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea. E-mail: miheelim@kaist.ac.kr
bDepartment of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea. E-mail: jinhaekim@dgist.ac.kr
cCenter for van der Waals Quantum Solids, Institute for Basic Science, Pohang 37673, Republic of Korea
First published on 4th February 2025
Extracellular accumulation of amyloid-β (Aβ) peptides in the brain plays a significant role in the development of Alzheimer's disease (AD). While the co-localization and interaction of proteins and metal ions with Aβ in extracellular milieu are established, their precise pathological associations remain unclear. Here we report the impact of Zn(II) on the anti-amyloidogenic properties of monomeric transthyretin (M-TTR), which coexists spatially with Aβ and Zn(II) in extracellular fluids. Our findings demonstrate the Zn(II)-promoted ternary complex formation involving M-TTR, Aβ, and Zn(II) as well as M-TTR's proteolytic activity towards Aβ. These interactions decrease the inhibitory effect of M-TTR on the primary nucleation process of Aβ as well as its ability to improve cell viability upon treatment of Aβ. This study unveils the variable activities of M-TTR towards Aβ, driven by Zn(II), providing insights into how metal ions influence the entanglement of M-TTR in the Aβ-related pathology linked to AD.
Additionally, highly concentrated metal ions have been detected in Aβ aggregate deposits.14–19 These metal ions bind to Aβ peptides, forming metal–Aβ complexes, which alters the aggregation and toxicity of Aβ.14–26 In the case of TTR, the diseased states lead to the dissociation of its native homotetrameric structure into aggregation-prone monomers (M-TTR), rendering it vulnerable to metal coordination by exposing additional surfaces.27–31Ex vivo observations have denoted the prevalence of M-TTR in the CSF and its aggregates enriched with Zn(II), implying the capacity of M-TTR to interact with Zn(II).32–34 Despite these findings, the connection of this interactive network involving Aβ, M-TTR, and Zn(II) to the pathology of AD remains elusive. Herein, we questioned whether M-TTR exhibits anti-amyloidogenic activity against Aβ in the presence of Zn(II). Thus, we determined the direct binding between M-TTR and Aβ under Zn(II)-present conditions, with the subsequent variation in the structure of Aβ. Furthermore, the influence of M-TTR on the aggregation and toxicity profiles of Aβ in the presence of Zn(II) was probed.
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Fig. 1 Anti-amyloidogenic activity of M-TTR against Aβ40 with and without Zn(II). (a) Amino acid sequences and structures of M-TTR and Aβ40 determined by NMR spectroscopy (PDB 2NBO36 for M-TTR; PDB 2LFM40 for Aβ40). (b) Scheme of the aggregation studies. (c) Aggregation kinetics of Aβ40 in the presence of M-TTR with (top) and without (bottom) Zn(II) monitored by the ThT assay. Conditions: [Aβ40] = 25 μM; [M-TTR] = 0.125–37.5 μM; [ZnCl2] = 25 μM; 20 mM HEPES, pH 7.4, 150 mM NaCl; 37 °C; quiescent conditions; λex = 440 nm; λem = 490 nm. The error bars denote s.e.m. for n = 9 examined over three independent experiments. (d) Morphologies of the resultant peptide and protein aggregates detected by TEM. Conditions: [Aβ40] = 25 μM; [M-TTR] = 25 μM; [ZnCl2] = 25 μM; 20 mM HEPES, pH 7.4, 150 mM NaCl; 37 °C; 24 h incubation; quiescent conditions. Scale bars, 200 nm. (e) Survival of the cells upon treatment of Aβ40 incubated with M-TTR in the presence (top) and absence (bottom) of Zn(II). The viability of 5Y cells, analyzed by the MTT assay, was calculated, compared to that with an equivalent amount of the buffered solution. Conditions: [Aβ40] = 25 μM; [M-TTR] = 25 μM; [ZnCl2] = 25 μM. The error bars denote s.e.m. for n = 6 examined over three independent experiments. All statistical significance was determined by a two-sided unpaired Student's t-test. *P < 0.05. |
Confirming the decrease in anti-amyloidogenic activity of M-TTR in the presence of Zn(II), we identified the specific microscopic step in the assembly of Aβ40 influenced by M-TTR under Zn(II)-added conditions. We initially analyzed the microscopic processes in the aggregation mechanisms of Zn(II)–Aβ40 without M-TTR by global fitting of previously delineated mathematical models for the protein assembly44 to experimental data sets. As shown in Fig. S2,† macroscopic aggregation curves for various concentrations of Aβ40 with equimolar Zn(II) were obtained by the ThT assay. Based on their normalized curves depicted in Fig. 2a, the values of half-time (t1/2), the time at which the ThT fluorescence intensity reaches half of its maximum value, were plotted against the peptide concentration on a double logarithmic scale. A resultant linear plot denotes that a single aggregation mechanism is dominant44,45 for the self-assembly of Zn(II)–Aβ40 under our experimental conditions. Global fitting of various kinetic models to the curves revealed that an aggregation model involving primary nucleation and elongation steps (i.e., nucleation–elongation model)44 well-described the experimental data (Fig. 2a and Table S1†). A reasonable global fit to the data was also acquired if the secondary nucleation step was included in the aforementioned model (Fig. S3†). To evaluate whether the secondary nucleation process is entailed in the assembly of Zn(II)–Aβ40, we performed additional experiments with seeds, preformed Aβ40 aggregates generated in the presence of Zn(II) (Fig. S4†). According to previously reported studies, the addition of a relatively small amount of seeds (e.g., up to 5% v/v) can dramatically increase the aggregation rate of Aβ, representing the assembly with substantial intermediation of the secondary nucleation step.44,46,47 Our results, however, showed similar t1/2 values of Zn(II)–Aβ40 aggregation with various quantities of seeds up to 5% v/v. Therefore, the primary nucleation and elongation processes predominantly participate in the aggregation of Zn(II)–Aβ40, without significant involvement of the secondary nucleation step.
Next, as presented in Fig. 2b, the inhibitory effect of M-TTR on the aggregation of Aβ40 in the presence of Zn(II) was quantitatively analyzed through global fitting of the nucleation–elongation model44 to the experimental data shown in Fig. 1c. As a result, the combined rate constants of primary nucleation (kn) and elongation (k+), k+kn values, gradually decreased with increasing the concentration of M-TTR, showing a reduction by ca. 90% with 1.5 equiv. of M-TTR. This implies the ability of M-TTR to impede either primary nucleation, elongation, or both of Zn(II)–Aβ40 assembly. To probe which of the microscopic steps is mainly influenced by M-TTR, Zn(II)–Aβ40 aggregation with M-TTR was observed in the presence of 35% v/v seeds, which can induce elongation-dominant aggregation (Fig. S5†).44,46,47Fig. 2c illustrates that M-TTR did not noticeably affect the aggregation kinetics of Zn(II)–Aβ40 with seeds exhibiting similar k+ values. This demonstrates that M-TTR predominantly hampers the primary nucleation process, rather than the elongation step, in the self-assembly of Zn(II)–Aβ40. Collectively, as summarized in Fig. 2d, in the presence of Zn(II), Aβ40 assembles via the combination of primary nucleation and elongation processes. Intriguingly, M-TTR can dominantly retard the primary nucleation of Zn(II)–Aβ40.
Similar experiments were conducted with Zn(II)-untreated samples (Fig. S6–S10 and Table S1†). Metal-free Aβ40 aggregation involves primary nucleation, elongation, and secondary nucleation catalyzed by the surface of preformed aggregates that can be saturated by incoming peptide species (Fig. 2d), consistent with previously reported results.48 The nucleation steps of metal-free Aβ40 (particularly, primary nucleation), following previous reports,8,43 can be primarily affected by the introduction of M-TTR. Since the elongation steps for both Zn(II)-treated and metal-free Aβ40 were not considerably perturbed by M-TTR, the change in k+kn values upon addition of M-TTR can be interpreted as M-TTR-triggered alteration in the primary nucleation of Aβ40. As shown in Fig. 2e, the k+kn value of Zn(II)-added Aβ40 was lowered by M-TTR, with an even greater reduction observed under Zn(II)-unadded conditions. In particular, the addition of M-TTR (2.5 μM) reduced the k+kn value of Zn(II)–Aβ40 by ca. 60%, whereas the value was lowered by ca. 100% in the presence of M-TTR (1.5 μM) under Zn(II)-untreated conditions. Overall studies manifest that while Zn(II) diminishes the inhibitory effect of M-TTR on the formation of primary nuclei of Aβ40, it does not completely eliminate the effect.
To elucidate how Zn(II) decreases the anti-amyloidogenic activity of M-TTR towards Aβ40, we investigated Zn(II)-binding properties of M-TTR in the absence and presence of Aβ40. Given the limited spectral changes of M-TTR mixed with Zn(II), the dissociation constant (Kd) was estimated through competitive Zn(II) titration experiments using Zincon (2-carboxy-2′-hydroxy-5′-sulfoformazyl-benzene monosodium salt), an indicator that shows electronic absorption (Abs) at 618 nm upon Zn(II) coordination with a Kd value in the micromolar range (Fig. S11†).49 As shown in Fig. S12a,† electronic Abs spectra exhibited no noticeable variation in Abs at 618 nm when the solution of M-TTR and Zincon was titrated with sub-equimolar Zn(II). In contrast, the addition of supra-equimolar Zn(II) notably elevated the Abs at 618 nm. These observations indicate that M-TTR can bind to 1 equiv. of Zn(II) with a binding affinity similar to or greater than that of Zincon. Considering that M-TTR includes three Zn(II)-binding sites,33 the affinity of M-TTR binding to Zn(II) greater than 1 equiv. could be weaker than that of Zincon. Based on the spectral changes at 618 nm, the apparent Kd value for Zn(II)–M-TTR was calculated to be in a micromolar range. Given the Hill coefficient (n) of 0.74 (±0.04), as depicted in Fig. S12b,† this apparent Kd value indicates the involvement of at least two Zn(II)-binding events in M-TTR.
Furthermore, we probed the interaction of Aβ40 with M-TTR in the presence of Zn(II) by two-dimensional 1H–15N heteronuclear single quantum coherence nuclear magnetic resonance (2D 1H–15N HSQC NMR) spectroscopy, as presented in Fig. 3a and S13.† The discernible alteration in the NMR signals of amino acid residues in or near the N-terminal region of 15N-labeled Aβ40 was observed upon addition of Zn(II) (Fig. 3a, top). Specifically, the peaks of some amino acid residues (e.g., Arg5, Asp7, Ser8, and Val12) adjacent to the Zn(II)-binding site in Aβ14–19 disappeared, suggestive of Zn(II) binding to Aβ40.50,51 Interestingly, mixing M-TTR with the solution of 15N-labeled Aβ40 with Zn(II) restored the vanished peaks to certain extents. This reveals that M-TTR can partially disrupt Zn(II) binding to Aβ40. The comparable Zn(II)-binding affinities of Aβ14–18 and M-TTR (Fig. S12†) in the micromolar range support this competitive Zn(II) binding of M-TTR with Aβ40. Prior studies described that Zn(II) coordination to M-TTR increases the structural flexibility of the region flanking α-helix (Fig. 1a).33 Given that the helical region of M-TTR can be involved in the association with Aβ,8,42,52,53 when it interacts with Zn(II) from Zn(II)–Aβ40, its subsequent structural perturbation could impact the binding and reactivity with Aβ40. The spectra further displayed that Zn(II) moderately induced the chemical shift perturbations (CSPs) of peaks corresponding to Ser8, Glu11, Val12, Gln15, Phe20, and Val24 in 15N-labeled Aβ40 treated with M-TTR (Fig. 3a, middle). Without Zn(II), the modest CSPs for 15N-labeled Aβ40 at Gln15, Val24, and Lys28 were revealed upon treatment of M-TTR (Fig. 3a, bottom). These may indicate the Zn(II)-directed ternary complexation among M-TTR, Zn(II), and Aβ40.
Investigations employing electrospray ionization-mass spectrometry (ESI–MS) further corroborate these findings. As depicted in Fig. 3b, a peak at ca. 2011 m/z, assigned to be a 9+-charged ion, appeared when Aβ40 was incubated with M-TTR and Zn(II). Tandem MS (ESI–MS2) analysis with applying collision-induced dissociation (CID) energy to this peak resulted in multiply charged peaks corresponding to [M-TTR + Zn(II)]7+ and [Aβ40 + Zn(II)]2+, indicating a ternary complexation of Aβ40 with M-TTR and Zn(II). This metal-assisted ternary complexation associated with Aβ was proposed to alter the aggregation.54 This may support the contribution of Zn(II) to the suppressive effect of M-TTR on the assembly of Aβ40 accompanied by the perturbation in Aβ40's primary nucleation (Fig. 2d). It should be noted that the Zn(II)-binding affinity of M-TTR in the presence of Aβ could not be accurately determined under our experimental conditions, likely due to the formation of a ternary complex. Without Zn(II) treatment, 8+-charged (ca. 2263 m/z) and 10+-charged (ca. 2243 m/z) peaks appeared (Fig. S14†), corresponding to heterodimers and heterotrimers comprised of M-TTR with monomeric and dimeric Aβ40, respectively.41 The direct interaction between the aggregates of Aβ40 and M-TTR was also monitored by cross-linking experiments. Glutaraldehyde, a well-known cross-linking reagent, covalently conjugated the peptide and protein aggregates generated from the aggregation studies (Fig. 1b).42,55 The size distribution of the resultant samples was analyzed by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) with western blotting using anti-Aβ (6E10) and anti-TTR antibodies (Fig. S15†). As shown in Fig. S16,† different from the samples of either Aβ40 or M-TTR with and without Zn(II), new bands between 35 kDa and 48 kDa were displayed for Aβ40 samples incubated with M-TTR under both Zn(II)-treated and -untreated41 conditions. These observations substantiate that dimeric Aβ40 can form heterotetramers with dimeric M-TTR with and without Zn(II).
Moving forward, the impact of the direct interaction between Aβ40 and M-TTR in the presence of Zn(II) on the structure of Aβ40 was assessed through ESI–MS studies. As depicted in Fig. 4, after incubating Aβ40 with M-TTR and Zn(II) for 24 h, new peaks at ca. 850 m/z and ca. 1325 m/z were detected, distinguishing them from the spectra obtained without Zn(II) treatment (Fig. S17†). ESI–MS2 in conjunction with CID characterized these peaks as Aβ1–142+ and Aβ15–402+ fragments, respectively. These fragments were not generated with Aβ40 samples relatively shortly incubated with M-TTR and Zn(II) for 3 h (Fig. S18†) and, thus, they could not be detected in the 2D 1H–15N HSQC NMR spectrum of Aβ40 with M-TTR in the presence of Zn(II) (Fig. 3). According to prior studies regarding the proteolytic competence of TTR against peptides or proteins induced by Zn(II),56,57 these fragmentations could result from the proteolytic activity of M-TTR in the presence of Zn(II). The binding of truncated Aβ with full-length ones can accelerate the generation of primary nuclei.58 Thus, proteolytic reactions catalyzed by M-TTR with Zn(II) could decrease the inhibitory effect of M-TTR on the primary nucleation process of Aβ40 (Fig. 2d). In particular, Aβ15–40 was suggested as an amyloid core segment capable of interacting with itself and the full-length of Aβ. While Aβ15–40 has intrinsic amyloidogenic properties to form toxic aggregates, it can redirect the assembly of full-length Aβ40 into non-fibrillar and less toxic aggregates.59 These aggregates may contribute to the observed cell viability upon treatment with the Aβ40 sample incubated with M-TTR and Zn(II) (Fig. 1e). In the case of Aβ1–14, as the least hydrophobic domain of Aβ40,60 it is less likely to interact with itself or Aβ40 to form amyloids; however, previous studies reported that the N-terminal regions of Aβ, including Aβ1–14, could interact with cell receptors (e.g., glutamate or N-methyl-D-aspartate receptors), potentially leading to cytotoxicity.60 Thus, the generation of Aβ1–14 may contribute to the observed reduction in cell viability when cells were treated with the Aβ40 sample incubated with M-TTR and Zn(II), compared to the sample without Zn(II) (Fig. 1e). It is worth noting that additional hydrolytic products of Aβ (e.g., Aβ1–203+, Aβ21–402+, Aβ1–223+, Aβ23–403+, and Aβ34–40+) were observed under both Zn(II)-treated and -untreated conditions (Fig. S19†), denoting that a minute quantity of Zn(II) remaining in the samples due to experimental limitations in purification processes may cause peptide hydrolysis. It is noteworthy that liquid chromatography coupled with MS (LC–MS) could not distinguish Aβ fragments detected under Zn(II)-treated conditions, possibly due to their similar retention time61 and the detection limit of LC–MS under our experimental conditions (Fig. S20†). Overall results illustrate that M-TTR in the presence of Zn(II) promotes the proteolysis of Aβ40 between His14 and Gln15, which potentially influences the aggregation and toxicity of Aβ40.
Footnote |
† Electronic supplementary information (ESI) available: Experimental section, Table S1 and Fig. S1–S20. See DOI: https://doi.org/10.1039/d4sc08771b |
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