Photini
Chalkidou
,
Themistoklis
Venianakis
,
George
Papamokos
,
Michael
Siskos
* and
Ioannis P.
Gerothanassis
*
Section of Organic Chemistry and Biochemistry, Department of Chemistry, University of Ioannina, Ioannina, GR 45110, Greece. E-mail: msiskos@uoi.gr; igeroth@uoi.gr
First published on 3rd February 2025
Base-catalyzed H/D exchange reactions through keto–enol tautomeric equilibrium are a textbook example in mechanistic organic chemistry. The pH effect of H2O catalysis, however, is largely unknown. We report, herein, variable temperature and pD 1H NMR studies of the experimental activation enthalpy , entropy
, and Gibbs free energy
of H/D exchange reactions of the H-6 and H-8 protons belonging to ring A of the natural product taxifolin. The experimental
values range from ∼25 to 23 kcal mol−1 for pD values of 6.1 to 9.6 and a buffer concentration in the range of 25 to 1000 mM. Differences in
values of neutral and anionic taxifolin and phloroglucinol were found to be very small (≤1.5 kcal mol−1). The experimental data of taxifolin and phloroglucinol were compared with DFT calculations with two up to four H2O molecules explicitly present, which demonstrate a unique catalytic role of H2O of over 35 kcal mol−1. Excellent agreement between
and DFT calculated Gibbs free activation energies,
, was obtained with the use of three molecules of H2O for the neutral state of phloroglucinol (with the “in–in” configuration of the phenol OH groups) and taxifolin. In the ionic form of phloroglucinol, the mechanistic pathway with two molecules of H2O in the transition state (one of which involves the C
O moiety) showed very good agreement with the experimental data. For the anionic form of taxifolin, the mechanistic pathway with three molecules of H2O in the transition state showed excellent agreement with the experimental
values. Among the various functionals used, the APFD/6-31+G(d) and B3LYP/6-31+G(d)/GD3BJ resulted in optimum agreement with
. The enthalpic term
is considerably larger than the entropic term
, in agreement with the experimental data. This indicates a dissociative mechanism of the loosely bound activated complex. The present results demonstrate the unique catalytic role of two and/or three molecules of H2O, through keto–enol tautomerization, with minor contribution of base-catalysis, in H/D exchange reactions in aromatic systems.
Acid- and base-catalyzed H/D exchange in aromatic systems is a textbook example in mechanistic organic chemistry. Thus, acid-catalyzed H/D electrophilic aromatic substitution reactions have been extensively utilized since the 1960s with the use of strong deuterated Brønsted or Lewis acids7–11 in the formation of a non-classical σ-carbocation. Base-catalyzed H/D exchange reactions can also provide an alternative method, which has been extensively utilized since the 1960s for the exchange of aromatic protons through keto–enol equilibrium.10,12–14 To the best of our knowledge, the first report demonstrating the catalytic role of H2O appeared in 2015 by Mehr et al.15 in the deuteration of aromatic rings through keto-enamine tautomeric equilibrium. The computational activation energy was found to be significantly reduced with the incorporation of a chain of five H2O molecules. Bonaldo et al.16 reported 1H NMR kinetic measurements of the H/D exchange process on ring A of several classes of flavonoids. It was suggested that the reaction mechanism involves a slow, solvent-mediated, C–D bond formation/O–D bond breaking followed by a fast solvent-mediated C–H bond breaking/O–D bond formation resulting in the aromaticity of ring A. DFT calculations with a single solvation molecule of H2O resulted in a significant reduction in the activation energy which, however, was found to be ∼30 kJ mol−1 higher than the experimental values. Fayaz et al.17 reported the direct activation of aromatic C–H bonds in polyphenolic compounds in a single step, using D2O, at neutral pD and near ambient temperatures. NMR and DFT calculations supported the significant catalytic role of two H2O molecules in a keto–enol tautomerization process.
From the above, it is evident that: (i) H2O molecules can have a very significant role in the transition states and activation energy barriers and also in the selection of a reaction pathway through H2O-mediated hydrogen/deuterium reaction mechanisms,1–6,16–26 and (ii) the traditional and widespread rational behind the primary role of acid or basic catalysis of H/D exchange in aromatic systems is incomplete. Along these lines, we report herein detailed variable temperature and pD dependent 1H NMR and DFT computational studies of neutral and ionic states of taxifolin and phloroglucinol (Scheme 1) in an effort to investigate whether specific numbers of H2O molecules6,27,28 can play a significant catalytic role in the H/D exchange process in polyphenolic aromatic systems.
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Fig. 2 H-6 H/D exchange kinetic curves of taxifolin (2.5 mM) in D2O, phosphate buffer (25 mM), and pD = 6.00 at various temperatures. |
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Fig. 3 H-8 H/D exchange kinetic curves of taxifolin (2.5 mM) in D2O, phosphate buffer (25 mM), and pD = 6.00 at various temperatures. |
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Fig. 4 H-6 H/D exchange kinetic curves of taxifolin (2.5 mM) in D2O, phosphate buffer (25 mM), and pD = 9.60 at various temperatures. |
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Fig. 5 H-8 H/D exchange kinetic curves of taxifolin (2.5 mM) in D2O, phosphate buffer (25 mM), and pD = 9.60 at various temperatures. |
The Gibbs energy of activation, (kcal mol−1), is given by:
![]() | (1) |
![]() | (2) |
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Fig. 6 Eyring plots of the H-6 (R2 = 0.988) and H-8 (R2 = 0.982) of taxifolin (2.5 mM) in D2O, phosphate buffer (25 mM), and pD = 6.00. |
The resulting ,
and
, for H/D exchange of taxifolin for various pD and phosphate buffer concentrations, are shown in Table 1. In all cases, the enthalpy term
makes a major contribution to
values with a minor entropic
term contribution. The
values for H-8 and H-6 protons were found to be in the range of 24.67 to 25.01 and 22.81 to 24.53 kcal mol−1, respectively. The effect of phosphate buffer concentration (25 mM to 1 M) on
values was ≤ 0.7 kcal mol−1, thus, its catalytic role is of minor importance.
Compound | Buffer concentration | pD | H-8 | H-6 | ||||
---|---|---|---|---|---|---|---|---|
(kcal mol−1) | (kcal mol−1) | (kcal mol−1) | (kcal mol−1) | (kcal mol−1) | (kcal mol−1) | |||
a Ref. 17. | ||||||||
Taxifolin | 25 mM | 6.0 | 20.31 ± 1.57 | 4.70 ± 0.79 | 25.01 | 18.91 ± 1.18 | 5.62 ± 0.59 | 24.53 |
25 mM | 7.6 | 18.79 ± 1.59 | 5.80 ± 0.80 | 24.59 | 14.01 ± 1.47 | 9.17 ± 0.82 | 23.18 | |
50 mM | 7.6 | 19.34 ± 1.18 | 5.05 ± 0.65 | 24.39 | 20.63 ± 1.26 | 2.24 ± 0.49 | 22.87 | |
25 mM | 9.6 | 18.43 ± 1.79 | 6.24 ± 0.72 | 24.67 | 16.67 ± 0.55 | 6.15 ± 0.55 | 22.81 | |
50 mM | 9.6 | 19.62 ± 0.77 | 4.07 ± 0.65 | 23.69 | 16.96 ± 0.54 | 5.51 ± 0.58 | 22.46 | |
1 M | 9.6 | 15.96 ± 1.22 | 7.98 ± 0.78 | 23.94 | 11.76 ± 0.75 | 10.38 ± 0.98 | 22.14 | |
Phloroglucinola | H-2,4,6 | |||||||
25 mM | 6.9 | 17.46 ± 0.30 | 3.50 ± 0.09 | 20.96 | ||||
25 mM | 7.9 | 16.05 ± 0.78 | 3.69 ± 0.26 | 19.74 | ||||
25 mM | 8.9 | 16.55 ± 1.15 | 2.86 ± 0.29 | 19.41 |
Neutral phloroglucinol | +2H2O | +3H2O | Exp. | |
---|---|---|---|---|
“in–out” | “in–in” | |||
“in–in A” | ||||
a A transition state could not be determined. | ||||
APFD/6-31+G(d) | 20.59 | 26.28 (10.94%) | 20.13 (58.52%) | 20.96 |
19.75 (30.51%) | ||||
B3LYP/6-31+G(d)/GD3BJ | 23.15 | 27.52 (14.19%) | 21.66 (46.80%) | |
21.54 (38.19%) | ||||
PBE0/6-31+G(d)/GD3BJ | 23.16 | 27.76 (9.65%) | 21.65 (51.47%) | |
21.48 (38.75%) | ||||
ωB97XD/6-31+G(d) | 26.19 | 30.86 (17.12%) | 25.08 (52.04%) | |
24.76 (30.36%) | ||||
CAM-B3LYP/6-31+G(d)/GD3BJ | 24.68 | 29.71 (16.10%) | 23.99 (46.39%) | |
23.62 (37.37%) |
Neutral taxifolin | +2H2O | +3H2O | Exp. | |||
---|---|---|---|---|---|---|
C-6 | C-8 | C-6 | C-8 | C-6 | C-8 | |
APFD/6-31+G(d) | 20.79 | 20.77 | 22.98 | 23.55 | 24.53 | 25.01 |
B3LYP/6-31+G(d)/GD3BJ | 20.81 | 21.93 | 25.63 | 24.72 | ||
PBE0/6-31+G(d)/GD3BJ | 20.80 | 21.28 | 25.18 | 24.67 | ||
ωB97XD/6-31+G(d) | 25.08 | 24.19 | 27.38 | 27.37 | ||
CAM-B3LYP/6-31+G(d) | 24.78 | 25.67 | 29.12 | 28.81 | ||
CAM-B3LYP/6-31+G(d)/GD3BJ | 22.69 | 23.59 | 27.26/27.05 | 27.66 |
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Fig. 7 The mechanistic pathway of the aromatic hydrogen exchange process of the complex of the neutral phloroglucinol (Flu) with two molecules of H2O with the APFD/6-31+G(d) method. |
In the case of the complex of phloroglucinol with three molecules of H2O, four reactions mechanisms were examined with the OH groups in the “in–out” and “in–in” configuration (Fig. 8). In the “in–out” and “in–out A” configurations (with slightly different hydrogen bond network of the molecules of H2O, Fig. 8A) two values of 26.28 and 23.03 kcal mol−1 were obtained with relative Boltzmann populations of 10.9% and 0.04%, respectively, which deviate significantly from the experimental value
. In contrast, in the “in–in” and “in–in A” configurations, the resulting
values of 20.13 and 19.75 kcal mol−1 with relative Boltzmann populations of 58.5% and 30.5% are in excellent agreement with the experimental value. In the transition state of the “in–in” and “in–in A” configurations, the oxygen atom of the central molecule of H2O forms a closer contact with the C(2)–H bond of 1.451 Å, contrary to 1.600 Å in the “in–out” and in the “in–out A” configurations (Fig. 8). This demonstrates that the relative configuration of the phenol OH groups could have a significant effect on the ΔG‡ values and, thus, on the reaction mechanisms. Again, the
term is significantly larger than the
term, which is in excellent agreement with the experimental data.
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Fig. 8 The mechanistic pathways of the aromatic hydrogen exchange process of the complex of neutral phloroglucinol with three molecules of H2O and the two phenol –OH groups in the “in–out” (A) and “in–in” (B) configurations at the APFD/6-31+G(d) level. In parenthesis are the Boltzmann populations (Table 2 and Table S1, ESI†). |
In the case of the complex of phloroglucinol with four molecules of H2O, three reaction mechanisms were examined with the OH groups in the “in–out”, “in–in”. and “in–in A” configuration (Fig. S1, ESI†). In the “in–in A” and “in–in” configurations, the (at the B3LYP/6-31+G(d)/GD3BJ level) with relative Boltzmann populations of 77.9% and 22.6%, respectively, are in excellent agreement with the experimental value. The
value of 21.97 kcal mol−1 with a Boltzmann population of 0.02% deviates from the experimental value. It can be concluded that: (i) the increase in the number of catalytically important molecules of H2O from three to four does not improve significantly the agreement of computational results with the experimental data. (ii) In all complexes with two to four molecules of H2O, the relatively small increase of entropy in the transition state indicates a dissociative mechanism of the loosely bound activated complex.
From the mechanistic point of view, the case of taxifolin is simpler than that of phloroglucinol since the C-6 and C-8 positions were examined with a single orientation of the OH(5) group due to the formation of a strong intramolecular hydrogen bond with the C(4)O group,34–37 which persists in organic and aqueous solutions.34 This significantly reduces the number of the available mechanistic pathways in the transition state. The computational Gibbs activation energies, with two molecules of H2O in the transition state, at the ωB97XD/6-31+G(d) level and
and at the CAM-B3LYP/6-31+G(d) level (
and
) are in excellent agreement with
and (
(Table 2 and Table S2, ESI†)). It is of interest that at the CAM-B3LYP/6-31+G(d) level, the small increase in
(C-8) relative to
(C-6) is reproduced correctly. The other functionals result in smaller
values, such as with the APDF/6-31+G(d) method (Fig. 9A). The use of three molecules of H2O in the transition state results in larger
values than those obtained with two molecules of H2O (Table 2, Table S2 (ESI†) and Fig. 9B). At the B3LYP/6-31+G(d)/GD3BJ and PBE0/6-31+G(d)/DG3BJ levels, the
values are in very good agreement with the experimental data, contrary to the case of CAM-B3LYP/6-31+G(d) and CAM-B3LYP/6-31+G(d)/GD3BJ. In all cases, the
values are significantly larger than the
values, in very good agreement with the experimental data. Inclusion of four molecules of water in the transition state does not improve the agreement between
and
for both the C-6 and C-8 hydrogens (Table S2, ESI†). Interestingly, the entropic term
reduces significantly and for some functionals, it becomes negative which is contrary to the experimental data (Table 1).
In the phloroglucinol anion, as in the case of the neutral form, several possible mechanistic pathways were investigated with two to four molecules of H2O in the transition state (Table 2 and Table S3, ESI†). For the complex of the phloroglucinol anion with two molecules of H2O, the reaction mechanism with one bound molecule of H2O on the OH group resulted in very low Boltzmann population and values (11.83 to 17.83 kcal mol−1) which strongly deviate from the experimental data
. In contrast, the reaction mechanisms (A and B, Fig. 10) with one bound molecule of H2O on the C
O moiety resulted in high Boltzmann populations and very good agreement with the experimental data, especially at the B3LYP/6-31+G(d)/GD3BG level
(Fig. 10b, c, Table 2 and Table S2, ESI†).
The computational data with three molecules of H2O in the transition state strongly deviate from the experimental data (Table S3, ESI†). Similarly, the computational data with four molecules of H2O strongly deviate from the experimental data
. In both cases, the enthalpic activation energy
is strongly underestimated (Table S3, ESI†).
For the taxifolin anion, the ring C (Fig. 1) was substituted by a methyl group to facilitate computations. In the case of the complex with two molecules of H2O, a transition state could not be determined using a variety of functionals and basis sets (Table 2 and Table S4, ESI†). In contrast, with three molecules of H2O in the transition state, the majority of the functionals and basis set used resulted in and
, in excellent agreement with the experimental values
and
(Table 2 and Table S4, ESI†). Fig. 11 presents the potential energy scan (PES) of the ionic form of taxifolin with three catalytically important molecules of H2O. The PES indicated various values of saddle points of the electronic energy function of the two scan coordinates (SC1 and SC2 shown in Fig. 11B) that represent the systematic proton translocation [Eel = f(SC1, SC2)]. From the systematic optimization of these saddle points, we located the transition state described in Fig. 11B. The adopted approach underlines the importance of the systematic search of transition states which are difficult to locate.
(i) The catalytic role of two and/or three molecules of H2O through keto–enol tautomerization, which is a many body cooperative effect of hydrogen-bonded H2O molecules in proton translocation, brought into question the generally accepted acid/base catalyzed H/D exchange mechanism emphasized in undergraduate chemistry textbooks.
(ii) Water catalysis plays a significant role at neutral pH values and near ambient temperatures thus, by definition, is a green approach by avoiding strong acid and basic conditions.
Footnote |
† Electronic supplementary information (ESI) available: Tables of computational data. See DOI: https://doi.org/10.1039/d4nj03276d |
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