Themed collection Advanced imaging techniques in biomineralisation research

Poster list
Faraday Discuss., 2025,261, 583-585
https://doi.org/10.1039/D5FD90045J
List of participants
Faraday Discuss., 2025,261, 586-587
https://doi.org/10.1039/D5FD90046H
Advanced imaging techniques in biomineralisation research
Faraday Discuss., 2025,261, 9-10
https://doi.org/10.1039/D5FD90025E
Concluding remarks: Advanced imaging techniques in biomineralization research
These four half-days of Faraday Discussions highlighted the wide range of physical techniques available to image the diversity and complexity of biominerals, in several natural models and in vitro systems.
Faraday Discuss., 2025,261, 569-582
https://doi.org/10.1039/D5FD00106D

The detection efficiency of low-dose cryo-4D STEM for biogenic crystals in frozen-hydrated samples
We developed an analytical description and procedures for numerically calculating the low-dose detection limits for thin crystals embedded in a thick matrix, particularly relevant for cryo-electron microscopy experiments.
Faraday Discuss., 2025,261, 269-285
https://doi.org/10.1039/D5FD00027K
Crystallisation in biomineral mollusc shell studied by 3D Bragg ptychography
3D investigation of the crystalline properties of a mollusc shell biomineral evidences a strain–size relationship of the individual coherent domains.
Faraday Discuss., 2025,261, 192-211
https://doi.org/10.1039/D5FD00020C
Oyster larval biomineralisation – insights from electron backscatter diffraction
In Hong Kong oysters, EBSD-based material characterisation of shells reveals a progressive increase in crystal grain size throughout ontogeny giving insights into early development of an ecologically and commercially important species.
Faraday Discuss., 2025,261, 380-395
https://doi.org/10.1039/D5FD00038F

Structure versus composition: a comparative study across scales
We evaluate the capabilities of various IR spectroscopy techniques using mollusk shells, for which non-IR data are available.
Faraday Discuss., 2025,261, 461-483
https://doi.org/10.1039/D5FD00012B

Spiers Memorial Lecture: A retrospective view on the non-classical features revealed by advanced imaging of biominerals
This retrospective review focuses on two case studies that exemplify the non-classical features of biominerals, mollusk nacre for invertebrates, and bone for vertebrates, and how correlations with in vitro model systems helped unravel these features.
Faraday Discuss., 2025,261, 11-67
https://doi.org/10.1039/D5FD00054H

Exploiting nanoprobe X-ray techniques for imaging of biomineralisation; chemical, structural and in situ opportunities
Multimodal imaging techniques at X-ray nanoprobe beamlines at synchrotrons are applied to the observation of calcium phosphate mineralisation and the exploration of the organic and mineral content of Mytilus edulis mussel shell calcite prisms.
Faraday Discuss., 2025,261, 231-250
https://doi.org/10.1039/D5FD00037H

Comparative structural analysis of stereom polymorphs in the sea urchin test
Herein, we use synchrotron micro-computed tomography to capture the three-dimensional architecture of the skeletal stereom in sea urchins for morphological quantification.
Faraday Discuss., 2025,261, 340-358
https://doi.org/10.1039/D5FD00033E

Imaging the orientation of hydroxyapatite crystallites across full mouse femora
Orientation (top) map and fluorescence map for a full mouse femur bone, showing the variation across the bone.
Faraday Discuss., 2025,261, 446-460
https://doi.org/10.1039/D5FD00009B

Synchrotron X-ray nanoprobe and correlative electron microscopy reveal the role of surface chemistry of self-assembling peptides in calcium phosphate nucleation
The fibrillar surface chemistry of the biomimetic peptide (P11-4) controls and accelerates the initial kinetics of amorphous calcium phosphate deposition in the absence of 3D confinement (gel network).
Faraday Discuss., 2025,261, 132-150
https://doi.org/10.1039/D5FD00017C
Revealing enameloid shark chemistry at the nanoscale
We use the technique of atom probe tomography to reveal the chemistry at the nanoscale of biominerals in shark teeth.
Faraday Discuss., 2025,261, 151-165
https://doi.org/10.1039/D5FD00019J
Biomineral displays systematic spatially varying crystallographic properties in fibrolamellar bone as revealed by position resolved X-ray diffraction
Synchrotron scanning X-ray diffraction and X-ray fluorescence microscopy map nanocrystal properties in bovine fibrolamellar bone to provide insights into biomineralization.
Faraday Discuss., 2025,261, 116-131
https://doi.org/10.1039/D5FD00030K

Bone mineralization and the effects of elevated osteopontin: from symmetry-breaking foci to 3D space-filling tessellation
Using advanced microscopy methods, we show the effects of upregulated osteopontin on the microscale morphogenesis and potential crystallinity of ripening mineral foci during bone mineralization, as a precursor to crossfibrillar mineral tessellation.
Faraday Discuss., 2025,261, 406-429
https://doi.org/10.1039/D5FD00013K

Three-dimensional imaging of vasculature and forming quail femur using cryo-correlative light and electron microscopy (cryo-CLEM)
After targeting endothelial cells with in ovo intravascular antibody injection, correlative light and electron microscopy under cryogenic conditions revealed numerous vesicles containing mineral precursors within blood vessels.
Faraday Discuss., 2025,261, 430-445
https://doi.org/10.1039/D5FD00022J

Nanobeam-scanning X-ray fluorescence microscopy reveals the elemental composition of dense intracellular bodies in biomineralizing coccolithophores
Nano-scanning X-ray fluorescence microscopy images entire biomineralizing coccolithophore cells in dried condition and in a liquid cell.
Faraday Discuss., 2025,261, 251-268
https://doi.org/10.1039/D5FD00021A
3D Calcium carbonate polymorphs imaging with stimulated Raman scattering in biominerals
We present a highly sensitive coherent Raman microscopy approach, which allows for the tridimensional (3D) imaging of a series of carbonate polymorphs in marine organisms.
Faraday Discuss., 2025,261, 286-297
https://doi.org/10.1039/D5FD00025D

Combined crystallographic study of king scallop (Pecten maximus) shells using SEM, EBSD and Raman spectroscopy
We provide complementary insights into the structure and composition of the myostracum to develop new evaluation approaches to assess the effects of environmental pollutants on the crystallography and microstructure of Pecten maximus shells.
Faraday Discuss., 2025,261, 484-500
https://doi.org/10.1039/D5FD00029G
New insights into non-contact reflectance IR mapping of teeth
In this reflection FTIR study we scan entire teeth to achieve chemical mappings of phosphates, carbonates and amide I.
Faraday Discuss., 2025,261, 520-541
https://doi.org/10.1039/D5FD00026B

Convergence in biomineralization patterns across animal eggshells
All calcified eggshells of land animals contain an organic matrix. Calcium distribution varies, with random crystal orientation in invertebrates but not vertebrates, and rare types like vaterite hint at evolutionary differences needing further study.
Faraday Discuss., 2025,261, 212-230
https://doi.org/10.1039/D5FD00028A
Atomistic insight into the interaction of aspartic acid species with calcium carbonate: model development
A model for carbonate–aspartate aqueous interface simulation was developed; the steps to develop predictive models for biomolecules in biomineralisation environments are discussed.
Faraday Discuss., 2025,261, 81-98
https://doi.org/10.1039/D5FD00008D
Millisecond-time-scale controlled freeze-quench for solute-intermediate analysis by solid-state NMR
An innovative freeze-quench method enables the trapping and study of solute reactive intermediates via low-temperature solid-state NMR.
Faraday Discuss., 2025,261, 99-115
https://doi.org/10.1039/D5FD00032G

Investigating temperature influences on shell growth and microstructural variations in bay scallops: insights from multiscale microscopy
Juvenile bay scallops grow faster at 26 °C than at 23 °C under lab conditions, with no negative effect on shell robustness.
Faraday Discuss., 2025,261, 501-519
https://doi.org/10.1039/D5FD00023H

Seeing the invisible: XRF reveals lead distributions in coral organisms grown in the Red Sea (Gulf of Aqaba)
Lead contamination from anthropogenic pollution in the Red Sea is found only in coral tissues not in the skeleton.
Faraday Discuss., 2025,261, 298-311
https://doi.org/10.1039/D5FD00024F
Detection limits of calcium by EELS, TEM-EDX and X-ray absorption spectroscopy for biomineralization studies
Limits to the minimum concentrations of Ca and minimum number of Ca atoms that can be detected are determined for EELS in TEM using the Ca L23 signal, and EDX in TEM using the Ca Kα line.
Faraday Discuss., 2025,261, 68-80
https://doi.org/10.1039/D5FD00001G

Silica biomineralization in plants alters the structure of lignin
Lignin extracted from sorghum with native silicon levels have higher affinity to silicic acid as compared to lignin from low-silicon mutants. Silicic acid presence during lignin polymerization inhibits β-O-4 linkages on the expense of Si–O-4 bonds
Faraday Discuss., 2025,261, 359-379
https://doi.org/10.1039/D5FD00011D
Interfaces at the nano scale: general discussion
Faraday Discuss., 2025,261, 312-339
https://doi.org/10.1039/D5FD90036K
Connecting length scales: general discussion
Faraday Discuss., 2025,261, 542-568
https://doi.org/10.1039/D5FD90038G
Crystal nucleation in biominerals: general discussion
Faraday Discuss., 2025,261, 166-191
https://doi.org/10.1039/D5FD90035B
Interfaces at the micron scale: general discussion
Faraday Discuss., 2025,261, 396-405
https://doi.org/10.1039/D5FD90037A
About this collection
We are delighted to share with you a selection of the papers associated with a Faraday Discussion on Advanced imaging techniques in biomineralisation research. More information about the related event may be found here: http://rsc.li/biomineral-fd2025. Additional articles will be added to the collection as they are published. The final versions of all the articles presented and a record of the discussions will be published after the event.
This meeting is for established and early-career scientists, postgraduate students and industrial researchers working on various aspects of biomineralization research. It will provide an ideal forum for cross-fertilisation of ideas and understanding between the distinct but adjacent communities working in this exciting field.
On behalf of the organising committee, we look forward to welcoming you to Edinburgh.