Xiaojia
He
a,
Winfred G.
Aker
a,
Peter P.
Fu
b and
Huey-Min
Hwang
*a
aJackson State University, Jackson, Mississippi, USA. E-mail: huey-min.hwang@jsums.edu
bNational Center for Toxicological Research, Arkansas, USA
First published on 25th September 2015
Along with the expanding use of engineered metal oxide nanomaterials (MONMs), there is a growing concern over their unintentional adverse toxicological effects on human health and the environment upon release and exposure. It is inevitable that biota will be exposed to nanomaterials, through intentional administration or inadvertent contact under such circumstances. Therefore, a thorough investigation of the potential nanotoxicity of MONMs at the nano–bio–eco interface is urgently needed. In general, nanomaterials interact with their surrounding environments, biotic and abiotic, immediately upon introduction into the environment. The behavior and fate of MONMs are influenced by the dynamics of the environment. Thus, understanding the interactions at the nano–bio–eco interface is necessary for selecting and designing MONMs with minimum adverse impacts. Despite the limitations of currently available techniques, careful characterization of nanomaterials and the choosing of methodologies that promote further risk assessment promise more reliable and accurate data output. Conventional toxicological analysis techniques lack the power to handle the large datasets generated from in vitro/in vivo observations. This paper provides a comprehensive review of the recent experimental and theoretical studies on the toxicity of MONMs mediated by two-way or three-way interactions. In the Perspectives, we also call for more open collaborations between industry, academia, and research labs to facilitate nanotoxicological studies focused specifically on interactions at the nano–bio–eco interface, leading to safe and effective nanotechnology for commercial, environmental, and medicinal use.
Nano impactThe behavior and fate of metal oxide nanomaterials (MONMs) are influenced by the dynamic interactions among the different compartments in natural environments. Thus, understanding the interactions at the nano–bio–eco interface is necessary for selecting and designing MONMs with minimum adverse impacts. This paper provides a comprehensive review of the recent experimental and theoretical studies on the toxicity of MONMs mediated by two-way or three-way interactions. In the Perspectives, we also call for more open collaborations between industry, academia, and research labs to facilitate nanotoxicological studies focused specifically on interactions at the nano–bio–eco interface, leading to safe and effective nanotechnology for commercial, environmental, and medicinal use. |
It is inevitable that, during their manufacture, use, and disposal, engineered MONMs are released into natural environments. Their appearance in soil, water and air could harm both environmental biota and humans upon exposure. Considerably unknown risks associated with MONMs have raised concerns from both public and authorities. Although some currently reported data suggest that very low concentrations of MONMs present in natural environments do no significant harm to biota, there still exists a huge knowledge gap with regard to the physicochemical properties of MONMs and their impact on environmental and human health. As reviewed and suggested in the existing literature,6–13 the overall life cycle-associated environmental impacts of those synthetic chemicals have to be cautiously addressed. Much of the published literature suggests that upon interaction with surrounding elements (chemicals, bacteria, biological contaminants, etc.) present in the environment physically and chemically, their behavior and fate can be drastically altered, leading to unpredictable outcomes; therefore, one should consider the dynamics of particular environments when making nanotoxicological assessments. Indeed, increased care has been taken in assessing their physical and chemical alteration in various environments for comparison with their intrinsic properties. For these and other reasons, thorough characterization of MONMs, taking into account the conditions of the particular environment under study is essentially indispensable.
Safe handling and disposal of nanomaterials nowadays receives increasing attention from both public and governmental authorities.14,15 It has been recognized that, among the 30 industrialized countries of the Organization for Economic Co-operation and Development (OECD), the United States, England, Germany, European commission and Australia have developed documents of good practices for the safety of manufactured nanomaterials.16,17 Additionally, under the regulation of Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH)18–20 and International Organization for Standardization (ISO),21,22 generic recommendations for exposure assessment and risk characterization of nanomaterials were addressed.23 However, there are still many organizations working with nanomaterials currently using conventional chemical safety methods through the life cycle of nanomaterials, especially in the process of disposal. Disposal is closely related to environmental health once MONMs are released or discharged, and it eventually affects human health.
Notably, issues gaining an increased attention are the establishment of toxicological profiles of engineered nanomaterials with regard to the nano–bio–eco interface, which entails the cataloging of interactions among nanomaterials, biotic, and abiotic environments. Physicochemical properties at the nanoscale afford those artificial nanomaterials to be highly reactive compared to conventional counterparts. Thus, the bioavailability and toxicity of nanomaterials can be altered at the nano–bio–eco interface. The control over the physicochemical properties of nanomaterials makes the design and application of novel nanomaterials possible in a green and sustainable way. We have long been interested in studying the nanotoxicity of nanomaterials (metal oxide nanomaterials in particular) to human and ecological environments, with the research involving biological and computational studies.6,8,24–37 In this review article, we summarize the findings of the studies that have shown MONMs interacting with their immediate environments at the nano–bio–eco interface. The mechanisms of their toxicity are briefly discussed. In addition, this review highlights currently advanced toxicological analysis techniques in quantitative or qualitative approaches. The correlation between nano–bio–eco interactions and nanotoxicology is then further discussed with an emphasis on the quantitative structure–activity relationship (QSAR).
Second, the surface chemistry of MONMs can be changed upon release or discharge. The high specific surface area of MONMs may result in strong adhesion to colloids, e.g., minerals and organic matter, in water and soil columns,47 leading to the alteration of their surface properties. For instance, the surface adsorption of phosphate to CeO2 nanoparticles leads to a significant reduction in their non-equilibrium retention (Kr) values upon addition of phosphate to soils.48 Similarly, Xu et al. (2012) also observed that ZnO and CuO nanoparticles can bind various constituents such as Na, Ca, P, and Cl from biological environments to form an ion corona, as shown in Fig. 1, with or without the addition of a biological environment.49 Surface charge and charge density may also be altered by the addition of organic matter and by ionic strength. Generally, an increase in organic matter may result in a domination of the charge of the organic matter at the surface of MONMs; and the increase of ionic strength can neutralize the surface charge of MONMs, for instance, TiO2, ZnO and CeO2.41 The alteration of the surface chemistry could in turn change the aggregation/agglomeration status of MONMs. More importantly, modifying a surface with organic matter may also affect the potential nanotoxicity by altering reactive oxygen species (ROS) production. It was suggested that humic acid (HA) accounts for the prevention of adhesion and inhibition of ROS generation, thus leading to reduced nanotoxicity.50
Fig. 1 Formation of ZnO nanoparticle complexes without fetal bovine serum (FBS) (A–I) and CuO nanoparticle complexes with FBS (J–R) in high-glucose Dulbecco's modified Eagle's medium (DMEM). TEM image (A) and dark-field TEM image (J) where the elemental maps were obtained; (B, K) TEM/EDS O-K map; (C, L) TEM/EDS Zn-K map; (D, M) TEM/EDS Ca-K map; (E, N) TEM/EDS Na-K map; (F, O) TEM/EDS K-K map; (G, P) TEM/EDS P-K map; (H, Q) TEM/EDS Cl-K map; (I, R) a simple model of ZnO biocomplexes. Permission obtained from Sci. Rep., 2012, 2, 406.49 Copyright Nature Publishing Group. |
Additionally, metal ion dissolution can also be greatly affected by pH, ionic strength, and organic matter. It has been shown that the dissolution of ZnO nanoparticles is enhanced at both low and high pH,51,52 as well as high ionic strength.52 However, natural organic matter either enhances or reduces ZnO dissolution, depending on their chemical composition and concentration.51,52 For instance, the presence of citric acid significantly enhanced the extent of Zn2+ release,53 similar to the case of an elevated Cu2+ release from CuO nanoparticles in the presence of Suwannee river fulvic acid.54 Moreover, Zn2+ release can also be affected via ion trapping by an organic matter complex, thereby resulting in decreased toxicity.55
Notably, in addition to chemical factors, physical factors such as sunlight may trigger photocatalytic activity.30,56–58 Light irradiation may substantially affect the physicochemical properties of MONMs in various ways. First, light irradiation may accelerate metal ion dissolution of MONMs. For instance, it is quite well known that the dissolution of ZnO NPs can be enhanced by UV or solar irradiation, which in turn leads to alteration of nanotoxicity.59,60 Second, the crystallinity of MONMs can also be altered. It was reported that photoinduced phase transition (from anatase to rutile) of TiO2 nanoparticles is initiated by intragap irradiation.61 In addition, energy transition occurs within MONMs or their complexes upon the absorption of radiant energy. Photoinduced electron transfer in quantum dot–metal oxide nanoparticle junctions was also reported.62,63 It is also well known that light irradiation can initiate and enhance ROS formation in MONMs.64
Fig. 2 Example of how nanomaterials interact with living organisms at the nano–bio interface. Uptake and distribution of nanomaterials are illustrated in daphnia (A) and fish (B). The interactions between nanomaterials and cell membrane are illustrated in (C). Receptor–ligand interactions, hydrophobic interactions, electrostatic attractions and hydrogen bonds are often involved in the adsorption of nanomaterials onto the cell membrane. Membrane fusion and endocytosis may occur during the internalization of nanomaterials. Metal ions released from dissolvable metal oxide nanomaterials can be transported into the cells via certain membrane channels. Permission obtained from Environ. Sci.: Processes Impacts, 2013, 15, 145–160.77 Copyright Royal Society of Chemistry. |
In addition, the nature and complexity of the protein coronas formed on the surface of MONMs can impact the distribution of nanomaterials in a biological system. Generally, there are two types of protein coronas: soft and hard coronas. Nanomaterials that adsorb proteins with low affinity form soft protein coronas, and nanomaterials with tightly bound proteins form hard protein coronas. Thus, it is expected that hard coronas can directly interact with nanomaterials, whereas soft coronas interact with nanomaterials through protein–protein interactions with hard coronas. As we have discussed above, surface coating normally allows the formation of soft coronas with weak coronal covering.78 It was also observed that the tightly bound proteins occur only on MONMs with negatively charged surfaces after the strong protein elution.75
The interaction between nanomaterials and lipids is also critical in determining their behavior and fate in biological systems. It was found that the entrapment of superparamagnetic maghemite nanoparticles (γ-Fe2O3) in lipid bilayers reduces the lipid transition temperature and increases the membrane fluidity of all three types of lipid vesicles, including 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine (SOPC), 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine and 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-L-serine (SOPC-POPS).79 They suggested that the negatively charged SOPC-POPS mixture is more predominant in this process due to high density encapsulation of nanoparticles via electrostatic interaction with positively charged γ-Fe2O3 nanoparticles.79 Besides, the interaction of nanomaterials with nucleic acid has also been studied. Recently, Magro et al. (2015) reported that γ-Fe2O3 nanoparticles interact chemically and electrically with DNA by direct covalent binding.80 Reversible electron transfer at the interface between γ-Fe2O3 nanoparticles and DNA, as well as the generation of holes on the DNA bases, were observed. The interaction may be affected by the nucleic acid length, presence of terminal phosphates, and types of DNA (dsDNA and ssDNA).81
Fig. 3 Illustration of the three-way nano–bio–eco interactions during the manufacture, use, and disposal of metal oxide nanomaterials. |
Besides the above mentioned issues, nanotoxicologists also face technical challenges while conducting ecotoxicity tests of engineered nanomaterials. The challenges include the transformations of studied engineered materials in environmental test media (e.g., aggregation, dissolution, and other interaction of small molecules) and modes of nanomaterial interference (e.g., adsorption to the test assay components and generation ROS).83,85 Therefore, combined knowledge and skills in the areas of physics, chemistry, and biology of nanomaterials are needed for improving the accuracy of the future toxicological assessments.
The level of ROS generation induced by nanoparticles is dependent on the physical and chemical nature of the nanoparticles and the surrounding environment and may proceed through different mechanisms.87 The critical chemical and physical properties of engineered nanomaterials, including MONMS, which lead to the generation of ROS and nanotoxicity, include molecular size, shape, oxidation status, surface area, bonded surface species, surface coating, solubility, and degree of aggregation and agglomeration.88,89
It has been demonstrated that nanomaterials induce toxicity mediated by ROS in many biological systems, such as human erythrocytes and skin fibroblasts etc.87 Apparently, nano–eco interactions occur. As aforementioned in the Section “Nano–eco interactions”, engineered nanomaterials, including MONMs, involve physicochemical interactions with abiotic environments. All the above-described changes are the critical factors that lead to the generation of ROS, and thus afford nanotoxicity through nano–eco interactions. It becomes clear that nano–bio–eco interactions can easily mediate nanotoxicity.
Although there are reports claiming that there is no clear evidence of harm with regard to the current low discharge/release levels of nanomaterials (measured or measure-based predicted), it is well recognized that there is a knowledge gap in the behavior and fate of nanomaterials in the dynamic environments that they may encounter.90 Thus, their potential hazard to biological systems urgently needs to be understood and projected. In this context, nanotoxicology has been widely studied in recent years. Various mechanisms of nanotoxicity have been proposed and published. Oxidative stress via overproduction of ROS is regarded as one of the major underlying causes of cellular damage and death.87 Other possible mechanisms include dissolution of metal ions,91 physical damage via direct contact, etc. Internalization of nanomaterials in an organism may also lead to intracellular responses/alterations. Generally, all those factors do not act individually; instead, a combination of multiple factors may be involved in any process. For instance, increasing the solution pH, and the amount of HPO42− and DOM can reduce the availability and/or dissolution of Zn2+ from ZnO nanoparticles, thus reducing the nanotoxicity.92 Below, we briefly illustrate the principles that apply to studying nanotoxicology.
Recently, an integrative approach involving a microbeam mapping technique of Synchrotron Radiation X-Ray Fluorescence Analysis (SRXRF) was developed for studying the microdistribution of TiO2 nanoparticles.95 Wang and co-workers highlighted this approach with an absolute detection limit of 10−12 to 10−15 g in vivo,95 as shown in Fig. 4. Similarly, with a view to redesign safe nanoparticles, Vranic et al. (2013) reported an alternative method using innovative imaging flow cytometry in conjunction with confocal microscopy to identify the physicochemical characteristics of the SiO2 nanoparticles involved in their uptake,96 as shown in Fig. 5. However, quantitative approaches in evaluating the biodistribution of nanomaterials are still largely limited at the nanoscale.
Fig. 4 SRXRF mapping of Ti-element distribution in the brain sections at 30 days after intranasal instillation of the differently-sized TiO2 particles.95 Permission obtained from Toxicol. Lett., 2008, 183(1–3), 72–80.95 Copyright Elsevier B.V. |
Fig. 5 Interaction of 50 nm FITC-SiO2 (A–D) and 100 nm Por-SiO2 (E–H) nanoparticles with human lung adenocarcinoma (NCI-H292) cells. (A, E) 3D reconstruction of a confocal analysis of the cells exposed to SiO2 NPs. Blue: DAPI-stained nuclei, red: TRITC-phalloidin-stained actin filaments, green: FITC/Por-labelled SiO2 nanoparticles. (B, F) A projection of all images acquired in the stack of (A, E). (C, G) 3D reconstruction of x, z and y, z-slices of the corresponding regions on (A, E). The insert shows one selected representative cell. (D, H) Cells were exposed to nanoparticles, followed by flow cytometry (FCM) analysis of median fluorescence intensity (MFI). *p < 0.05, significantly different from the previous time point. Permission obtained from Part. Fibre Toxicol., 2013, 10(1), 2.96 Copyright BioMed Central Ltd. |
A single-nanoparticle detection method involving single-nanoparticle plasmonic microscopy and spectroscopy (dark-field optical microscopy and spectroscopy, DFOMS) and ultrasensitive in vivo assay (cleavage-stage zebrafish embryos, critical aquatic species) has been developed to study transport and toxicity of single silver97 and single gold98 nanoparticles on embryonic developments. This technique may also be used for MONMs. Li et al. (2012) successfully developed metal oxide nanoparticle-enhanced Raman scattering (MONERS) that can be applied for direct tracking and understanding of nano–bio–eco interactions at the single nanoparticle level.99 They monitored the photocatalytic decomposition of methylene blue (MB) by TiO2 NPs (P25, Degussa) using MONERS, suggesting its capability of direct molecular observation and understanding of chemical processes at a metal oxide interface. Notably, recent advances in hyperspectral microscopy with enhanced dark-field optical microscopy and hyperspectral imaging (HSI) enable the rapid identification of materials at the micro- and nanoscales with a detection limit of 10–15 nm for MONMs.100–103 For instance, Fig. 6 shows the identification of TiO2 naoparticles in lung tissues. The emerging hyperspectral microscopy exhibits great potential for assessing spatial distribution and spectral characteristics of MONMs in biological and environmental systems, facilitating studies on the fate and transformation of these particles in various environments.101
Fig. 6 Identification of TiO2 naoparticles in lung tissues. (A) Reference spectral library from TiO2 exposed tissue; (B) reference spectral library from the control tissue; and (C) dark field images from nano-TiO2 exposed tissues (upper panel). Dark field hyperspectral images from TiO2 exposed tissues identifying these nanoparticles, which appeared as aggregates of white inclusions (middle panel). Hyperspectral mapping of TiO2 nanoparticles in these tissues appeared as red dots or aggregates (bottom panel). Permission obtained from Toxicol. Appl. Pharmacol., 2013, 269(3), 250–262.103 Copyright Elsevier B.V. |
In addition, studying nanotoxicity at the single cell level is also critical in establishing toxicological profiles quantitatively. Some cell populations, not all of them, may be vulnerable to their exposure to nanomaterials. The cell cycle is also one of the crucial factors underlying nanotoxicity and hence nanotoxicology. In light of this knowledge, nanotoxicity assaying at the single-cell level has been proposed based on flow and scanning image cytometry.104 Furthermore, magnetophoresis, combining fluorescence-based cytotoxicity assaying, is also in practice for assessing the viability and uptake of the single-cellular magnetic nanoparticles (MNPs) simultaneously.105 Notably, the integration of a cell-on-a-chip (CoC) with a microfluidic system has also been proposed for nanotoxicity assessments at the single-cell level.106
Other instrumentation techniques such as fluorescence microscopy and TEM are also frequently used in fulfilling such needs. Fluorescence microscopy is highly sensitive to specific fluorescent dyes at a certain excitation and emission wavelength. Also, TEM is one of the most efficient ways to identify the internalization of nanomaterials in vivo/in vitro. For example, as shown in Fig. 7, ROS production and biodistribution of TiO2 nanoparticles are revealed in a zebrafish larva on a daily basis.28 Both techniques are highly visualizable, and can be further modified and improved for multiple purposes, particularly enabling semi-quantitative or quantitative analysis. Tai et al. (2012) reported that a microchip nanopipet with a narrow chamber width could be applied to TEM image-based quantitative characterization.111 They successfully developed a nanopipet with a narrow chamber width for sorting nanoparticles from blood and preventing the aggregation of the particles during the preparation process, thus enabling quantitative analysis of their aggregation/agglomeration states and the particle concentration in aqueous solutions. Techniques such as confocal microscopy and flow cytometry can also be used to study particle uptake and subcellular localization in a semi-quantitative approach.112
Fig. 7 Time-dependent biodistribution of TiO2 nanoparticles and their ROS production in zebrafish larva (Danio rerio). (A–E): Dihydroethidium (DHE) detection of superoxide yield at 96 hpf. Epi-fluorescence (F–H) and light microscopy (F1–H1) images of FITC-S-TiO2-treated zebrafish larvae at 2, 3, and 4 dpf. (I–P): TEM of S-TiO2 NPs (100 ppm)-treated embryos (120 hpf). Image (J), (L) and (N) are higher magnification images of NPs in the rectangular region of images (I), (K) and (M), respectively. Magnification for the images: (I) 40000×, (J) 100000×, (K) 40000×, (L) 100000×, (M) 15000×, (N) 30000×, (O) 12000× and (P) 5000×. *hpf: hours post fertilization. dpf: days post fertilization. FTIC: fluorescein isothiocyanate. Permission obtained from Nanotoxicology, 2014, 8(S1), 185–195.28 Copyright Informa Plc. |
Notably, the integration of the microscope and the Raman spectrometer now allows rapid and easy sample collection, preparation, and analysis in a qualitative way.113 In addition, developing a reliable qualitative method may provide a prototype that can be advanced for quantitative use. For instance, both DFOMS and Hyperspectral Imaging System are developed on the basis of optical microscopy.
-to study the translocation/distribution of nanomaterials in biotic/abiotic systems;
-to study the exposure route to biota and humans;
-to identify and monitor the quantity of released nanomaterials in environments;
-and to study the relationship between physicochemical properties of nanomaterials and nanotoxicity with various biological endpoints.
It is prudent to characterize the physicochemical properties of nanomaterials thoroughly prior to any further studies.114,115 Indeed, measurements of particle characteristics in pure water may vary tremendously from those in cell culture media or water samples from lakes/rivers, etc. The alteration of their physicochemical properties tends to change their distribution and behavior in biotic/abiotic environments. Of course, the exposure route also matters most.116,117 The action mechanism and outcome may vary substantially with different routes. The exposure route often includes inhalation, direct contact (i.e. penetration through skin), and ingestion. Exposure may also occur in drug delivery and treatment. Meanwhile, the identification and monitoring of the release/discharge of nanomaterials is paramount in giving validation and credence to nanotoxicology in the long run.118,119 Ultimately, our goal is to generate a group of computational models that can correlate and explain the relationship between the physicochemical properties of nanomaterials and their toxicity, on the solid foundation of experimental researches.
Tested MONMs | Modeling techniques | Descriptors | Description system | Correlation efficient (represented by (R2, RMSE), if applicable) | Biological model | Reference | |
---|---|---|---|---|---|---|---|
Correlation (training set) | Correlation (validation set) | ||||||
a Density functional theory (DFT), decision treeboost (DTB), decision tree forest (DTF), genetic algorithm-multiple linear regression (GA-MLR), Human Umbilical Vein Endothelial Cells (HUVEC), “liquid drop” model (LDM), multiple linear regression (MLR), Molecular Operating Environment (MOE), spin–lattice relaxivity (R1) and spin–spin relaxivity (R2), Random Forest (RF), root mean square error (RMSE), standard error of estimation (SEE), standard error of external prediction (SEP), simplified molecular input-line entry system (SMILES), self-organizing map (SOM), and support vector machine (SVM). | |||||||
17 Metal oxide NPs | Monte Carlo | SMILES-based optimal descriptors | SMILES | R 2 = 0.90–0.94 | R 2 = 0.73–0.98 | E. coli | 135 |
17 Metal oxide NPs | DTB | Oxygen percent, molar refractivity and polar surface area | Molecular descriptor | (0.955, 0.11) | E. coli | 133 | |
DTF | (0.896, 0.19) | ||||||
17 Metal oxide NPs | MLR | Enthalpy of formation (ΔHMen+) | DFT | (0.85, 0.20) | (0.83, 0.19) | E. coli | 36 |
17 Metal oxide NPs | Monte Carlo | SMILES-based optimal descriptors | SMILES | R 2 = 0.83–0.96 | E. coli | 134 | |
17 Metal oxide NPs | Absolute electronegativity | DFT | F = 33.83, R2 = 0.87 (dark exposure) | E. coli | 29 | ||
Molar heat capacity and average of the alpha and beta LUMO energies | F = 20.51, R2 = 0.804 (photo exposure) | ||||||
18 Metal oxides | RF regression | van der Waals interactions, electronegativity and metal–ligand binding characteristics | LDM-based descriptors | (0.96, 0.10) | (0.93,0.13) | HaCaT cells | 136 |
(0.92,0.12) | (0.78,0.32) | E. coli | |||||
18 Metal oxides | GA-MLR | ΔHfc: enthalpy of formation of metal oxide nanocluster representing a fragment of the surface and χc the Mulliken's electronegativity of the cluster | 27 Nanodescriptors including 16 quantum-mechanical descriptors and 11 image descriptors | R 2 = 0.93, RMSE = 0.12 | E. coli and HaCaT cells | 137 | |
TiO2 | MLR and LDA | Engineered size, size in ultrapure water, size in PBS, and concentration in ultrapure water | General descriptor | With R2 up to 0.77 | Rat L2 lung epithelial cells and rat lung alveolar macrophages | 130 | |
ZnO | Engineered size, size in ultrapure water, size in PBS, and size in CCM | R 2 = 0.94–0.99 | |||||
ZnO and TiO2 | Monte Carlo | Optimal descriptor | Squasi-SMILES | R 2 = 0.78–0.92 | R 2 = 0.67–0.83 | Human lung epithelial cells | 135 |
TiO2 | Monte Carlo | Optimal descriptor | SMILES-based optimal descriptors | (0.9639, 0.049); (0.9893, 0.025); (0.9792, 0.049) | (0.9263, 0.123); (0.8959, 0.118); (0.9647, 0.066) | Human lung epithelial cells | 141 |
17 Metal oxide NPs | MLR | Metal electronegativity (χ), the charge of the metal cation corresponding to a given oxide (χox), atomic number and valence electron number of the metal | SMILES | (0.81–0.90, 0.16–0.22) | (0.73–0.96, 0.15–0.26) | E. coli | 150 |
PLSR | (0.73–0.87, 0.19–0.27) | (0.70–0.96, 0.17–0.29) | |||||
15 Metal oxide nanoparticles | PM6 method | Spherical size of nanoparticles and the weighted energy of the highest occupied molecular orbital | Microscopic-image-based and theory-based (calculated) descriptors | R 2 = 0.82–0.94 | NA | 151 | |
9 Metal oxide nanoparticles | Logistic regression | Atomisation energy, period of the nanoparticle metal, primary size, and volume fraction | Molecular, chemical and physical information and different concentrations | Accuracy >95% | Bronchial epithelial (BEAS-2B) cells | 128 | |
24 Metal oxide nanoparticles | SVM | Conduction band energy and ionic index | An initial pool of 30 NP descriptors | Accuracy ~94% and confidence level of 80% | Human bronchial epithelial (BEAS-2B) and murine myeloid (RAW 264.7) cells | 121 | |
24 Metal oxide nanoparticles | Monte Carlo | Optimal descriptors | SMILES | Best model with R2 = 0.8824, RMSE 0.214 for calibration set; and R2 = 0.7809, RMSE = 0.348 for validation set | Human bronchial epithelial cells (BEAS-2B) | 140 | |
24 Metal oxide nanoparticles | Markov Chain Monte Carlo (MCMC) | Conduction band energies, dissolution | General descriptor | NA | Human bronchial epithelial cells (BEAS-2B) | 144 | |
SiO2 | Monte Carlo | Mathematical functions of size and concentration | Optimal descriptors | R 2 = 0.9837, s = 2.53 %, F = 483 | R 2 = 0.9269, s = 7.94 % | Human lung fibroblasts | 139 |
70 metal oxide nanoparticles | NA | Band energy | Reactivity descriptors | Accuracies of ca. 99% in both training and prediction sets | NA | 129 | |
41 Nanoparticles with 6 metal oxide nanoparticles | Perturbation approach | Molar volume, polarizability, size | Molar volume (V), electronegativity (E), polarizability (P), and nanoparticle size (L) | Accuracy > 93% for both training and prediction sets | 15 Mammalian cell lines, including A549 human cells | 143 | |
11 Metal oxide and 7 metallic nanoparticles | MLR and LDA | Four types of 9-variable descriptors | Molar volume (V), electronegativity (E), polarizability (P), and nanoparticle size (L) | Accuracies of ca. 99% in both training and prediction sets | Multiple bioindicators, including D. magna, P. subcapitata, D. rerio, etc | 142 | |
48 Fe2O3 and Fe3O4 metal oxide nanoparticles and 3 CdSe quantum dots core with various coating combinations | MLR, and sparse linear modeling and feature selection, MLR-EM | Relaxivities (R1 and R2) and the zeta potential | A set of 691 molecular descriptors | Training set R2 = 0.81; test set regression coefficient R2 = 0.86; SEE = 3.6; and SEP = 3.3 | Endothelial and smooth muscle cells, monocytes, and hepatocytes | 131 | |
Nonlinear Bayesian regularized artificial neural network methods | Training set R2 = 0.80; test set R2 = 0.90; SEE = 2.8; and SEP = 2.9 | ||||||
109 Nanoparticles sharing a superparamagnetic core and dextran coating | Linear | 11 Descriptors | Derived from a set of 124 chemically interpretable descriptors | Training set R2 = 0.74; test set R2 = 0.63; SEE = 0.34; and SEP = 0.36 | Significant variation in HUVEC | ||
Non-linear | Training set R2 = 0.70; test set R2 = 0.66; SEE = 0.30; and SEP = 0.33 | ||||||
Linear | 19 Descriptors | Training set R2 = 0.76; test set R2 = 0.79; SEE = 0.19; and SEP = 0.24 | Significant variation in PaCa2 cells | ||||
Non-linear | Training set R2 = 0.77; test set R2 = 0.54; SEE = 0.15; and SEP = 0.28 | ||||||
109 Nanoparticles sharing a superparamagnetic core and dextran coating | kNN QSAR models | Lipophilicity, van der Waals surface area, molecular refractivity, electrostatic descriptors | 2-D MOE descriptors | Coefficients of correlation Rabs2 ranged from 0.65 to 0.80 for external sets | Significant variation in PaCa2 cell line | 127 | |
48 Fe2O3 and Fe3O4 metal oxide nanoparticles and 3 CdSe quantum dots core with various coating combinations | SVM | Size, relaxivities, and zeta potential | Molecular descriptors | External prediction accuracies of 56 − 88% for the five independent external validation sets, with the mean external accuracy of 73% | Endothelial and smooth muscle cells, monocytes, and hepatocytes | ||
44 Iron oxide core nanoparticles | H4 class definition and naive Bayesian classifier (NBC) model | Spin–lattice relaxivity and zeta potential | Molecular descriptors | Classification accuracy > 78% | Aorta endothelial, vascular smooth muscle, hepatocyte, and monocyte/macrophage | 132 | |
‘hit’ (i.e., significant bioactivity) identification analysis and SOM based consensus clustering | Primary size, spin–lattice and spin-spin relaxivities, and zeta potentials |
Oftentimes, nanotoxicological profiles vary not only on biological models, but also on biological endpoints. Till now, across a wide range of biological endpoints, a considerable number of studies have been conducted to evaluate the impact of MONM exposure with regard to QSAR modeling. The majority of laboratory studies on biological endpoints are mainly in vitro studies, including linear/log-linear regression models of EC50/LC50 cytotoxicity,29,36,133,134,136,137 the concentration of nanoparticles leading to 50% reduction in cell viability (TC50),143 damage to cellular membranes (units L−1) via lactate dehydrogenase (LDH) release,130,135,140,141 oxidative stress,121 intracellular calcium flux,121 mitochondrial membrane potential,121,132,138 surface membrane permeability,121 cytotoxic inhibition ratio with MTT assay,139 cell apoptosis,131,132 ATP content,132,138 apoptosis,138 reducing equivalents,132,138 plasma membrane leakage,128 and cell membrane damage via propidium iodide uptake.140,144 A single indicator may not be sufficient sometimes; therefore, multiple cell types at multiple doses and with multiple endpoints may provide a more comprehensive view of the biological effects resulting from certain nanomaterials.138 Although QSAR with in vitro studies can imply some correlations with in vivo observations, QSAR with a direct observation in vivo can further promote predicting nanotoxicity with high accuracy and reliability.
One should not ignore that sufficiently large nanotoxicity datasets can be rapidly acquired with the advance in High Throughput Screening (HTS) assay.145 For instance, ten independent toxicity-related signaling pathways associated with murine macrophage cell line exposed to a library of MONMs can be readily obtained via HTS assay.146 Later, those data can either be classified through the use of certain computational techniques such as SOM,147 or further analyzed via QSAR modeling.128 Such hierarchical ranking and clustering of MONMs based on HTS basically provide an enormous in vitro profile network for further testing in vivo.121,138 In addition, HTS has shown promising potential for us to perform in vivo hazard risk assessment with high volume datasets.148,149In vivo studies are generally considered to be more definitive regarding nanotoxicity assessment. This is typically valuable in facilitating the establishment and utilization of QSAR models in designing safe nanomaterials. Conventionally, obtaining valid scientific data is quite slow and somewhat objective in some cases. With the help of HTS assay, scientists and researchers can be relieved from intensive lab work and focus more on method development and data analysis. There is a trend in academia for universities and institutions to apply this relatively novel technique in their researches.
Note that the rising popularity of QSAR modeling is essentially associated with a question over their reliable predictions. Thus, various modeling techniques have been acquired and applied in such context. Modeling techniques such as decision tree forest (DTF) and decision treeboost (DTB),133 multiple linear regression (MLR),36,131,142,150 naive Bayesian classifier (NBC) modeling,132 self-organizing map (SOM),132 Random Forest (RF) regression,136 logistic regression (LR),128 k-nearest neighbor (k-NN),127 partial least square regression (PLSR),150 support vector machines (SVM),121,127 ensemble learning (EL),133 linear discriminant analyses (LDA),130,131,142 sparse linear modeling and feature selection linear modeling,131 and Bayesian regularized artificial neural network methods131 have exhibited great potential in underlying the quantitative relationships between the molecular structures and biological activities of MONMs. It is worthy to note that most of the predictive outcomes generated by those modeling techniques are within the acceptable range.
Not only a range of pristine MONMs have been involved in QSAR studies,29,36,128,133–137,142,150 but also surface functionalization of certain MONMs is also studied and reported.127,131 There are a large number of molecular, chemical and physical descriptors of those MONMs available in databases. Selection of a proper descriptor is the most critical step in generating valid QSAR models with acceptable accuracy. Many descriptors can be obtained readily based on the molecular structure and atomic or group contributions, e.g., molecular weight, van der Waals, surface area, and size. Descriptors that relate to the electronic structure, for instance, molar heat capacity, alpha and beta LUMO energies, and electronegativity, are available from quantum chemical calculations. Currently, the simplified molecular input-line entry system (SMILES),134,135,140,150 “liquid drop” model (LDM)-derived descriptors,136 molecular operating environment (MOE),127 and optimal descriptors139 are the most frequently used databases for descriptor selection.
Ultimately, the aim of the QSAR approach is to predict the toxicological behavior of nanomaterials at the nano–bio–eco interface. With the advance in computational technology, QSAR studies are likely to play a vital role in the design of novel nanomaterials on the basis of acceptable reliability and accuracy. Prediction performances of QSAR models have shown great value in fulfilling such needs. Successful implementation of QSAR can certainly facilitate current progress on nanotoxicology in vitro and in vivo with a reasonable cost. Computational scientists in related disciplines can directly retrieve data from published literature, without being troubled by intensive lab work. Such “collaboration” could eventually not only benefit the research groups mutually, but also move the scientific community forward. One can envision that QSAR as a computational strategy can be a powerful tool in the future.
One should recognize that quantitative analysis is always necessary in the quest to understand nanotoxicity at the nano–bio–eco interface. With the help of qualitative approaches, one can observe in a wide view, not limited to some definitive figures. We should also be cautious when it comes to the comparison between in vitro and in vivo observations because failure may often exist. Despite the different levels of complexity between the in vitro and in vivo studies at the nano–bio–eco interface, observations in vitro are less labor-intensive and more cost-efficient in most cases. Such merits also allow assessing nanotoxicity rapidly with sensitive and reliable HTS assay. Toxicological profiles can be readily generated with multiple biological models, multiple biological endpoints, and multiple types of nanomaterials. Collectively, the sum of the responses across in vitro and in vivo experiments can be retrieved and analyzed with QSAR repeatedly over time. Unlike laboratory work, the computational approach has its merits of being reliable and reproducible. One fundamental thing that needs to be handled properly is the provision of a toxicological profile based on reliable experimental studies with as much accuracy as possible. Due to their capability of forming a vast number of structural geometries with an electronic structure, MONMs play an important role in nanotechnology and possess advantages for propelling QSAR model development.90 Nowadays, most QSAR studies still mainly focus on the risk assessment of pristine MONMs, that is, with no consideration of doping or surface modification. The increasing demand on novel MONMs with intentional tailoring forces us to pay more attention to newly developed nanomaterials.
Till now, many challenges that remain before the above mentioned approaches in the study of nanotoxicology can be put into practice, though the rate of progress has been laudable. Further studies are still required, further advances are still occurring, and more remain to be revealed. Greater knowledge of how MONMs interact at the nano–bio–eco interface is also needed. Ultimately, more open collaborations between industry, academia, and research labs need to be formed. Moreover, there is a need to take a broader look at facilitating nanotoxicological studies, and to focus specifically on the interactions at the nano–bio–eco interface, leading to safe and effective nanotechnology-driven MONMs for commercial, environmental and medicinal use.
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